Wall clock time and date at job start Tue Mar 31 2020 10:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00000 * 2 1 4 4 H 1.48503 * 109.47602 * 180.27533 * 3 2 1 5 5 H 1.48498 * 109.47098 * 300.27568 * 3 2 1 6 6 H 1.48505 * 109.47373 * 60.27264 * 3 2 1 7 7 C 1.38809 * 119.99944 * 180.27411 * 2 1 3 8 8 H 1.08007 * 120.00020 * 179.72293 * 7 2 1 9 9 N 1.36938 * 120.00404 * 359.72824 * 7 2 1 10 10 C 1.46492 * 120.00254 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.50233 * 34.92902 * 10 9 7 12 12 C 1.53039 * 109.50058 * 154.99762 * 10 9 7 13 13 C 1.53036 * 109.54048 * 181.31209 * 12 10 9 14 14 C 1.53196 * 109.31349 * 298.63252 * 13 12 10 15 15 N 1.46931 * 108.77288 * 54.63673 * 14 13 12 16 16 C 1.34774 * 120.63359 * 126.41484 * 15 14 13 17 17 O 1.21557 * 120.00182 * 176.29370 * 16 15 14 18 18 C 1.47787 * 119.99900 * 356.29510 * 16 15 14 19 19 N 1.32824 * 120.07033 * 39.64275 * 18 16 15 20 20 C 1.31673 * 122.00902 * 180.02562 * 19 18 16 21 21 C 1.38395 * 121.70167 * 359.97438 * 20 19 18 22 22 C 1.38861 * 119.13494 * 0.02562 * 21 20 19 23 23 O 1.34425 * 134.63812 * 179.97438 * 22 21 20 24 24 C 1.34453 * 110.85417 * 180.02562 * 23 22 21 25 25 C 1.34310 * 110.16258 * 0.02562 * 24 23 22 26 26 C 1.40196 * 120.07543 * 219.36945 * 18 16 15 27 27 C 1.46923 * 118.73838 * 306.38915 * 15 14 13 28 28 H 0.97001 * 120.00241 * 359.72737 * 1 2 3 29 29 H 0.97003 * 119.99311 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.45985 * 301.33014 * 12 10 9 31 31 H 1.09004 * 109.46201 * 61.30086 * 12 10 9 32 32 H 1.09003 * 109.50075 * 58.58197 * 13 12 10 33 33 H 1.09000 * 109.50360 * 178.68615 * 13 12 10 34 34 H 1.09001 * 109.58934 * 174.42191 * 14 13 12 35 35 H 1.08991 * 109.58956 * 294.84751 * 14 13 12 36 36 H 1.08002 * 119.14839 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.43077 * 180.02562 * 21 20 19 38 38 H 1.07993 * 124.91790 * 180.02562 * 24 23 22 39 39 H 1.07997 * 126.88934 * 180.02562 * 25 24 23 40 40 H 1.09007 * 109.58676 * 293.82448 * 27 15 14 41 41 H 1.08998 * 109.59142 * 173.39860 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0067 5 1 1.8863 2.3993 -1.2091 6 1 1.8964 2.3936 1.2158 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2021 -0.0103 9 7 1.3256 -2.3881 -0.0058 10 6 2.0581 -3.6567 -0.0113 11 1 2.9717 -3.5519 0.5738 12 6 1.1835 -4.7542 0.5993 13 6 1.9598 -6.0728 0.6239 14 6 2.3143 -6.4790 -0.8100 15 7 3.0309 -5.3688 -1.4525 16 6 4.2314 -5.5697 -2.0312 17 8 4.7833 -4.6593 -2.6179 18 6 4.8767 -6.8969 -1.9526 19 7 4.1468 -8.0000 -2.0734 20 6 4.6819 -9.2014 -2.0089 21 6 6.0395 -9.3833 -1.8116 22 6 6.8584 -8.2699 -1.6776 23 8 8.1752 -8.0839 -1.4813 24 6 8.4698 -6.7734 -1.4217 25 6 7.3549 -6.0407 -1.5762 26 6 6.2614 -6.9943 -1.7562 27 6 2.4137 -4.0355 -1.4525 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0014 30 1 0.9087 -4.4756 1.6166 31 1 0.2813 -4.8753 -0.0003 32 1 2.8747 -5.9457 1.2027 33 1 1.3449 -6.8486 1.0802 34 1 2.9511 -7.3635 -0.7925 35 1 1.4014 -6.6945 -1.3651 36 1 4.0447 -10.0673 -2.1128 37 1 6.4567 -10.3783 -1.7624 38 1 9.4597 -6.3687 -1.2712 39 1 7.2817 -4.9632 -1.5739 40 1 1.5088 -4.0517 -2.0600 41 1 3.1160 -3.3076 -1.8589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999777339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:00 Heat of formation + Delta-G solvation = 11.078019 kcal Electronic energy + Delta-G solvation = -26085.088697 eV Core-core repulsion = 22352.420491 eV Total energy + Delta-G solvation = -3732.668206 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.77513 -41.49291 -39.80457 -38.70320 -36.25156 -34.09598 -34.00648 -32.86526 -32.76377 -31.02905 -29.91904 -27.16427 -25.90294 -25.31946 -24.15254 -23.29171 -23.18990 -21.71628 -20.47248 -19.17878 -19.03783 -18.80371 -17.87866 -17.44663 -17.14360 -16.83309 -16.43676 -16.23111 -15.65316 -15.62306 -15.35476 -15.10816 -15.04647 -14.51544 -14.45521 -14.04933 -13.95853 -13.84552 -13.66782 -13.08681 -12.99878 -12.90084 -12.55021 -12.18309 -12.05340 -11.94198 -11.75065 -11.54293 -11.40531 -11.37768 -11.12266 -10.69351 -10.39588 -9.84529 -9.42178 -9.04770 -8.00035 -5.29742 -0.71455 0.05991 1.17409 1.43019 1.44731 1.48480 1.54697 1.58601 1.79974 2.52057 2.56261 2.99697 3.22748 3.33110 3.47017 3.72760 3.79391 3.92867 4.00235 4.05078 4.10770 4.25585 4.31439 4.34571 4.35152 4.56072 4.64030 4.69290 4.73284 4.83741 4.85437 4.94793 5.03078 5.08874 5.14442 5.30762 5.34479 5.41445 5.43169 5.54891 5.84219 6.22333 6.29275 6.60960 6.96352 7.29226 8.00091 8.26548 9.22850 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.003490 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.322929 B = 8021.620555 C = 9078.611987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.728 5.728 10 C 0.170 3.830 11 H 0.032 0.968 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.097 3.903 15 N -0.584 5.584 16 C 0.559 3.441 17 O -0.577 6.577 18 C 0.116 3.884 19 N -0.465 5.465 20 C 0.106 3.894 21 C -0.115 4.115 22 C 0.068 3.932 23 O -0.186 6.186 24 C 0.045 3.955 25 C -0.231 4.231 26 C -0.160 4.160 27 C 0.106 3.894 28 H 0.253 0.747 29 H 0.378 0.622 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.222 0.778 37 H 0.192 0.808 38 H 0.263 0.737 39 H 0.151 0.849 40 H 0.062 0.938 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 -26.286 -0.725 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.050 0.950 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.024 4.024 15 N -0.315 5.315 16 C 0.346 3.654 17 O -0.456 6.456 18 C -0.025 4.025 19 N -0.179 5.179 20 C -0.047 4.047 21 C -0.135 4.135 22 C 0.013 3.987 23 O -0.086 6.086 24 C -0.019 4.019 25 C -0.251 4.251 26 C -0.165 4.165 27 C -0.020 4.020 28 H 0.062 0.938 29 H 0.211 0.789 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.239 0.761 37 H 0.209 0.791 38 H 0.279 0.721 39 H 0.168 0.832 40 H 0.080 0.920 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.210 -25.820 -1.116 29.025 hybrid contribution 0.663 1.973 -0.144 2.087 sum 13.873 -23.847 -1.261 27.617 Atomic orbital electron populations 1.69797 1.06350 1.26163 1.59016 1.25489 0.96397 1.00803 1.03242 0.85149 0.78033 0.80062 0.76981 1.19744 1.21823 1.21344 1.19561 0.91076 0.85421 1.41783 0.91639 1.42504 1.05562 1.00512 1.88227 1.20613 0.94729 0.86204 0.92489 0.95021 1.21744 0.98500 0.94232 1.01101 1.21910 1.00575 0.97125 0.96370 1.22434 0.98196 0.89048 0.92718 1.48182 1.18075 1.11014 1.54230 1.18349 0.80984 0.87157 0.78864 1.90761 1.64997 1.44905 1.44950 1.20216 0.89123 0.92458 1.00702 1.67768 1.38643 0.98581 1.12888 1.23494 0.92422 0.94779 0.94053 1.21731 0.92524 0.98265 1.00963 1.20083 0.82866 0.95091 1.00627 1.84007 1.22165 1.27905 1.74506 1.25002 1.01307 0.78049 0.97506 1.22683 0.91457 1.00775 1.10155 1.20882 0.94565 0.95860 1.05150 1.22356 0.96847 0.82453 1.00294 0.93772 0.78901 0.91707 0.91276 0.92488 0.87058 0.86122 0.89892 0.76127 0.79093 0.72132 0.83165 0.91964 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.56 13.06 21.65 0.28 -59.28 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.97 47.83 29.55 68.60 2.03 49.86 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.25 -14.35 9.93 84.03 0.83 -13.52 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -38.03 5.12 -322.57 -1.65 -39.68 16 10 C 0.17 7.16 2.92 45.07 0.13 7.30 16 11 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 12 C -0.12 -3.78 5.35 30.62 0.16 -3.62 16 13 C -0.12 -2.95 6.08 30.67 0.19 -2.76 16 14 C 0.10 2.49 6.03 86.36 0.52 3.01 16 15 N -0.58 -20.39 2.97 -822.36 -2.44 -22.84 16 16 C 0.56 20.93 7.44 86.77 0.65 21.58 16 17 O -0.58 -26.10 16.01 -3.90 -0.06 -26.16 16 18 C 0.12 3.43 6.04 42.00 0.25 3.69 16 19 N -0.46 -10.45 7.27 -184.54 -1.34 -11.79 16 20 C 0.11 1.38 11.13 84.75 0.94 2.32 16 21 C -0.12 -1.40 10.13 22.46 0.23 -1.17 16 22 C 0.07 1.34 7.48 23.11 0.17 1.51 16 23 O -0.19 -3.27 10.57 -5.14 -0.05 -3.32 16 24 C 0.05 0.71 11.97 66.92 0.80 1.51 16 25 C -0.23 -5.70 10.69 23.44 0.25 -5.45 16 26 C -0.16 -4.32 6.12 -20.05 -0.12 -4.45 16 27 C 0.11 4.41 6.01 86.37 0.52 4.93 16 28 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.38 20.65 7.80 -92.71 -0.72 19.92 16 30 H 0.06 2.12 8.14 -2.38 -0.02 2.11 16 31 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.12 2.74 4.56 -2.39 -0.01 2.73 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.26 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.06 2.59 8.14 -2.38 -0.02 2.58 16 41 H 0.05 2.57 7.02 -2.39 -0.02 2.55 16 Total: -1.00 -80.39 343.39 3.10 -77.29 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.35 Total: 24.49 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.99 Total: 11.43 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -5.16 Total: -133.59 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.12 Total: -29.48 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -80.39 3.10 -77.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999777339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.369 kcal (2) G-P(sol) polarization free energy of solvation -80.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds