Wall clock time and date at job start Tue Mar 31 2020 10:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00008 * 2 1 4 4 H 1.48502 * 109.46940 * 272.96342 * 3 2 1 5 5 H 1.48497 * 109.47139 * 32.96222 * 3 2 1 6 6 H 1.48499 * 109.47200 * 152.96113 * 3 2 1 7 7 C 1.38814 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99580 * 339.33738 * 7 2 1 9 9 N 1.36939 * 120.00086 * 159.34648 * 7 2 1 10 10 C 1.46925 * 120.62956 * 332.61713 * 9 7 2 11 11 C 1.53192 * 108.77573 * 233.63611 * 10 9 7 12 12 C 1.53046 * 109.33691 * 305.34892 * 11 10 9 13 13 C 1.53103 * 109.50171 * 61.34884 * 12 11 10 14 14 H 1.08997 * 109.49353 * 58.61606 * 13 12 11 15 15 N 1.46507 * 109.51266 * 178.68490 * 13 12 11 16 16 C 1.34776 * 119.99522 * 204.87333 * 15 13 12 17 17 O 1.21653 * 120.00516 * 359.97438 * 16 15 13 18 18 C 1.46984 * 119.99591 * 180.02562 * 16 15 13 19 19 C 1.35854 * 125.12139 * 179.97438 * 18 16 15 20 20 C 1.46101 * 106.07171 * 179.97438 * 19 18 16 21 21 C 1.39445 * 135.07661 * 180.02562 * 20 19 18 22 22 N 1.31673 * 120.07431 * 179.97438 * 21 20 19 23 23 C 1.32308 * 122.14189 * 0.02562 * 22 21 20 24 24 C 1.37749 * 121.58466 * 359.97438 * 23 22 21 25 25 C 1.39241 * 118.95729 * 0.02562 * 24 23 22 26 26 O 1.34280 * 134.37732 * 180.35563 * 25 24 23 27 27 C 1.46928 * 120.62784 * 152.64743 * 9 7 2 28 28 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58593 * 113.84690 * 10 9 7 30 30 H 1.08995 * 109.70375 * 353.49115 * 10 9 7 31 31 H 1.08997 * 109.49937 * 65.31549 * 11 10 9 32 32 H 1.08999 * 109.49926 * 185.38561 * 11 10 9 33 33 H 1.08998 * 109.45947 * 181.40562 * 12 11 10 34 34 H 1.09001 * 109.46068 * 301.36547 * 12 11 10 35 35 H 0.96994 * 119.99964 * 24.87043 * 15 13 12 36 36 H 1.07994 * 126.96183 * 359.97438 * 19 18 16 37 37 H 1.07999 * 119.96433 * 359.97438 * 21 20 19 38 38 H 1.08009 * 119.20646 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.52086 * 180.02562 * 24 23 22 40 40 H 1.09005 * 109.58113 * 246.15314 * 27 9 7 41 41 H 1.08994 * 109.58724 * 6.57305 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4350 2.0826 -1.3982 5 1 1.4804 2.6338 0.7617 6 1 3.5776 1.4230 0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1075 0.3291 9 7 3.3136 -1.2400 -0.4188 10 6 3.8172 -0.2584 -1.3891 11 6 4.4611 -1.0079 -2.5598 12 6 5.5282 -1.9649 -2.0234 13 6 4.8741 -2.9905 -1.0936 14 1 4.1070 -3.5394 -1.6398 15 7 5.8901 -3.9259 -0.6047 16 6 5.5316 -5.1626 -0.2068 17 8 4.3644 -5.5022 -0.2532 18 6 6.5509 -6.1009 0.2842 19 6 6.3068 -7.3676 0.7103 20 6 7.6019 -7.9199 1.1003 21 6 8.0416 -9.1415 1.6091 22 7 9.3199 -9.3288 1.8633 23 6 10.2248 -8.3869 1.6525 24 6 9.8773 -7.1514 1.1521 25 6 8.5399 -6.8930 0.8634 26 8 7.8719 -5.8355 0.3748 27 6 4.2348 -2.2635 0.0937 28 1 -0.4850 0.8400 0.0004 29 1 4.5602 0.3799 -0.9110 30 1 2.9923 0.3524 -1.7558 31 1 3.6980 -1.5755 -3.0923 32 1 4.9231 -0.2923 -3.2399 33 1 6.0050 -2.4811 -2.8566 34 1 6.2779 -1.3995 -1.4699 35 1 6.8208 -3.6550 -0.5673 36 1 5.3493 -7.8654 0.7521 37 1 7.3328 -9.9349 1.7949 38 1 11.2611 -8.5916 1.8782 39 1 10.6303 -6.3952 0.9863 40 1 5.0118 -1.7886 0.6928 41 1 3.6838 -2.9775 0.7057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007788712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:49 Heat of formation + Delta-G solvation = 34.520187 kcal Electronic energy + Delta-G solvation = -25445.446572 eV Core-core repulsion = 21713.794895 eV Total energy + Delta-G solvation = -3731.651677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.06991 -39.94800 -39.22887 -37.71784 -34.69186 -33.33676 -32.64712 -32.08119 -30.89068 -30.51179 -29.16772 -25.41380 -25.24424 -23.85839 -22.90071 -22.08099 -21.90279 -20.80643 -19.88439 -18.51690 -18.34781 -16.91876 -16.85619 -16.33271 -15.95769 -15.79142 -15.35024 -14.94492 -14.88875 -14.40212 -14.04905 -13.92152 -13.78562 -13.69748 -13.48336 -13.27193 -12.94648 -12.44863 -12.16354 -11.99673 -11.58817 -11.27141 -10.99826 -10.82590 -10.76199 -10.39850 -10.22484 -10.15684 -9.99652 -9.84089 -9.77973 -9.50472 -9.21035 -8.79514 -8.57505 -7.01702 -5.95150 -3.32390 0.05617 0.80482 1.41270 1.96568 2.94470 3.00029 3.29571 3.30875 3.46711 3.49192 3.91585 3.96196 4.17243 4.43646 4.51370 4.55669 4.78184 4.95859 4.96148 5.06811 5.20556 5.22382 5.30195 5.36354 5.45658 5.49197 5.72437 5.73713 5.84955 5.92191 5.95940 6.11416 6.25341 6.31490 6.33038 6.41880 6.54595 6.60072 6.67499 6.85855 7.39099 7.46679 7.92199 8.00541 8.32930 8.92346 9.70258 10.05217 11.20636 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028673 B = 0.002709 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.280757 B =10335.204395 C =10691.814033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.122 3.878 14 H 0.096 0.904 15 N -0.707 5.707 16 C 0.594 3.406 17 O -0.501 6.501 18 C -0.017 4.017 19 C -0.101 4.101 20 C -0.198 4.198 21 C 0.175 3.825 22 N -0.495 5.495 23 C 0.116 3.884 24 C -0.161 4.161 25 C 0.103 3.897 26 O -0.179 6.179 27 C 0.144 3.856 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.402 0.598 36 H 0.178 0.822 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.024 0.976 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.565 -13.688 -0.641 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.389 4.389 8 H 0.105 0.895 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.114 0.886 15 N -0.357 5.357 16 C 0.378 3.622 17 O -0.377 6.377 18 C -0.067 4.067 19 C -0.123 4.123 20 C -0.202 4.202 21 C 0.011 3.989 22 N -0.205 5.205 23 C -0.034 4.034 24 C -0.181 4.181 25 C 0.047 3.953 26 O -0.079 6.079 27 C 0.016 3.984 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.236 0.764 36 H 0.195 0.805 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.164 0.836 40 H 0.042 0.958 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.974 -14.294 -0.418 25.385 hybrid contribution 0.640 1.936 -0.280 2.058 sum 21.614 -12.357 -0.698 24.907 Atomic orbital electron populations 1.69839 1.05709 1.26550 1.52798 1.25267 0.95223 0.97522 0.99465 0.86954 0.80021 0.84709 0.76976 1.21580 1.23131 1.19637 1.18946 0.84718 0.94947 1.40271 0.89497 1.44283 1.08717 1.32618 1.46804 1.21413 0.97502 0.92104 0.89433 1.22001 0.97782 0.98324 0.99021 1.21698 0.98495 0.96948 0.98306 1.21892 0.89715 0.89362 0.97268 0.88636 1.46052 1.12210 1.12831 1.64560 1.16622 0.85918 0.81202 0.78487 1.90964 1.16140 1.76513 1.54125 1.22385 0.80936 0.96863 1.06473 1.22727 0.97877 0.92767 0.98953 1.20985 0.93986 0.97517 1.07670 1.22492 0.92248 0.93605 0.90512 1.67816 1.01794 1.33174 1.17692 1.22625 0.99653 0.87529 0.93589 1.21060 0.91700 1.00139 1.05218 1.19877 0.94087 0.85539 0.95793 1.83982 1.18393 1.37165 1.68336 1.21217 0.92822 0.91485 0.92845 0.92724 0.95581 0.90643 0.91267 0.92075 0.92241 0.91926 0.76391 0.80462 0.81508 0.81344 0.83558 0.95796 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.94 13.97 55.49 0.78 -27.16 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.23 24.35 -169.99 -4.14 18.09 16 4 H -0.29 -6.93 6.62 56.52 0.37 -6.55 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.69 6.63 56.52 0.37 -6.31 16 7 C -0.26 -7.37 10.04 -15.06 -0.15 -7.52 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 9 N -0.60 -14.24 2.77 -172.32 -0.48 -14.72 16 10 C 0.12 2.55 4.20 -3.71 -0.02 2.54 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.34 16 12 C -0.12 -1.64 5.36 -26.65 -0.14 -1.78 16 13 C 0.12 1.99 2.60 -67.78 -0.18 1.82 16 14 H 0.10 1.79 7.58 -51.93 -0.39 1.39 16 15 N -0.71 -9.48 5.08 -54.87 -0.28 -9.76 16 16 C 0.59 8.70 7.76 -12.72 -0.10 8.60 16 17 O -0.50 -9.16 16.49 5.23 0.09 -9.07 16 18 C -0.02 -0.21 7.07 -36.89 -0.26 -0.47 16 19 C -0.10 -1.11 10.80 -37.28 -0.40 -1.51 16 20 C -0.20 -2.01 6.43 -105.22 -0.68 -2.69 16 21 C 0.18 1.53 11.28 -17.17 -0.19 1.33 16 22 N -0.49 -4.53 10.34 -13.00 -0.13 -4.67 16 23 C 0.12 0.84 11.13 -17.53 -0.20 0.64 16 24 C -0.16 -1.23 10.13 -39.39 -0.40 -1.63 16 25 C 0.10 1.06 7.48 -38.13 -0.29 0.77 16 26 O -0.18 -2.01 10.26 3.69 0.04 -1.97 16 27 C 0.14 2.88 6.09 -3.71 -0.02 2.85 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 30 H 0.08 1.76 4.49 -51.93 -0.23 1.52 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 4.29 8.32 -40.82 -0.34 3.95 16 36 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.51 7.93 -51.93 -0.41 1.10 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -33.69 340.00 -7.44 -41.14 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.16 Total: 1.78 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.27 Total: 1.22 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.12 Total: -56.30 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.12 Total: -11.04 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.69 -7.44 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007788712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.656 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds