Wall clock time and date at job start Tue Mar 31 2020 10:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00348 * 2 1 4 4 H 1.48500 * 109.46808 * 270.00154 * 3 2 1 5 5 H 1.48496 * 109.46856 * 29.99295 * 3 2 1 6 6 H 1.48493 * 109.47215 * 149.99850 * 3 2 1 7 7 C 1.38818 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99712 * 165.29769 * 7 2 1 9 9 N 1.36940 * 120.00255 * 345.29528 * 7 2 1 10 10 C 1.46347 * 120.77811 * 153.28111 * 9 7 2 11 11 C 1.53891 * 108.15557 * 132.71202 * 10 9 7 12 12 H 1.08999 * 112.57463 * 182.36427 * 11 10 9 13 13 C 1.54541 * 107.82874 * 306.64562 * 11 10 9 14 14 C 1.54286 * 104.84621 * 89.07487 * 13 11 10 15 15 C 1.54962 * 104.80731 * 359.80866 * 14 13 11 16 16 H 1.09003 * 112.25346 * 146.61525 * 15 14 13 17 17 C 1.47162 * 120.70586 * 333.58300 * 9 7 2 18 18 N 1.48308 * 107.20900 * 58.50786 * 11 10 9 19 19 C 1.34774 * 128.08188 * 106.70037 * 18 11 10 20 20 O 1.21730 * 119.99285 * 6.70978 * 19 18 11 21 21 C 1.46490 * 120.00512 * 186.70596 * 19 18 11 22 22 C 1.37773 * 125.86098 * 189.21190 * 21 19 18 23 23 C 1.39930 * 107.68798 * 179.97438 * 22 21 19 24 24 O 1.35119 * 145.13947 * 180.43031 * 23 22 21 25 25 C 1.34383 * 109.62583 * 179.97438 * 24 23 22 26 26 C 1.34462 * 109.44227 * 359.56235 * 25 24 23 27 27 C 1.39133 * 107.40522 * 359.97438 * 23 22 21 28 28 N 1.37104 * 108.11062 * 0.02562 * 27 23 22 29 29 H 0.97001 * 125.74272 * 179.97438 * 28 27 23 30 30 H 0.96999 * 120.00097 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.56579 * 13.10576 * 10 9 7 32 32 H 1.09001 * 109.80730 * 252.45085 * 10 9 7 33 33 H 1.09000 * 110.36412 * 207.90746 * 13 11 10 34 34 H 1.08996 * 110.36666 * 330.11847 * 13 11 10 35 35 H 1.08991 * 110.36561 * 118.84479 * 14 13 11 36 36 H 1.09007 * 110.36110 * 241.05026 * 14 13 11 37 37 H 1.08991 * 109.75335 * 107.61029 * 17 9 7 38 38 H 1.09004 * 109.79071 * 346.89586 * 17 9 7 39 39 H 1.08000 * 126.15339 * 359.96085 * 22 21 19 40 40 H 1.07993 * 125.27593 * 179.82116 * 25 24 23 41 41 H 1.07998 * 126.41087 * 180.28616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0637 -1.2176 -0.2368 9 7 1.3592 -2.3686 0.3021 10 6 1.8356 -3.6492 -0.2221 11 6 1.8730 -4.6585 0.9390 12 1 2.2588 -5.6317 0.6353 13 6 2.7026 -4.0331 2.0831 14 6 1.6796 -3.2471 2.9293 15 6 0.3225 -3.4662 2.2142 16 1 -0.5122 -3.5008 2.9143 17 6 0.1604 -2.3611 1.1556 18 7 0.4980 -4.7473 1.4878 19 6 -0.3875 -5.7543 1.3528 20 8 -0.0489 -6.7950 0.8199 21 6 -1.7572 -5.5966 1.8476 22 6 -2.7031 -6.5943 1.9366 23 6 -3.8714 -6.0273 2.4579 24 8 -5.1461 -6.2662 2.8370 25 6 -5.7063 -5.1276 3.2794 26 6 -4.8084 -4.1294 3.2069 27 6 -3.6154 -4.6781 2.6812 28 7 -2.3219 -4.4219 2.3058 29 1 -1.8780 -3.5608 2.3538 30 1 -0.4850 0.8400 -0.0004 31 1 2.8367 -3.5251 -0.6346 32 1 1.1582 -4.0056 -0.9982 33 1 3.1708 -4.8138 2.6827 34 1 3.4596 -3.3609 1.6791 35 1 1.6449 -3.6412 3.9449 36 1 1.9334 -2.1871 2.9430 37 1 -0.7242 -2.5580 0.5501 38 1 0.0627 -1.3926 1.6462 39 1 -2.5674 -7.6280 1.6546 40 1 -6.7192 -5.0304 3.6412 41 1 -4.9680 -3.1012 3.4963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017594382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:03 Heat of formation + Delta-G solvation = 63.813650 kcal Electronic energy + Delta-G solvation = -27106.833793 eV Core-core repulsion = 23376.452375 eV Total energy + Delta-G solvation = -3730.381417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.94278 -41.94183 -40.31312 -39.06050 -36.04062 -33.54571 -33.26717 -32.50970 -32.31678 -31.43999 -29.37890 -28.11206 -25.57607 -25.31013 -24.17543 -22.70238 -21.99454 -21.78509 -21.48726 -20.16814 -19.19703 -18.54907 -17.91360 -17.28443 -17.13004 -16.73880 -16.49838 -16.34499 -15.96405 -15.33203 -15.29786 -14.90503 -14.71318 -14.51494 -14.38132 -14.08340 -13.72854 -13.67921 -13.59323 -13.28622 -12.92289 -12.78655 -12.69678 -12.32280 -12.17215 -12.13493 -11.82514 -11.63924 -11.31088 -11.23266 -11.08878 -10.62946 -9.99253 -9.67784 -8.92971 -8.70108 -7.90155 -5.36192 -0.07205 1.17749 1.48117 1.48434 1.51462 1.59148 1.62072 1.67772 2.13033 2.19672 2.49896 3.24164 3.30183 3.41885 3.57406 3.76797 3.81977 3.93278 4.03188 4.09267 4.22577 4.28418 4.37280 4.51314 4.53883 4.70833 4.72088 4.75036 4.79132 4.99784 5.00926 5.02205 5.06109 5.20876 5.25113 5.43135 5.45213 5.50571 5.59408 5.64086 6.09841 6.25017 6.31214 6.43055 6.90417 7.08584 7.75980 8.29521 9.16582 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.004529 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.926387 B = 6180.780502 C = 7376.727251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.044 4.044 3 Si 0.966 3.034 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.256 4.256 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.137 3.863 11 C 0.119 3.881 12 H 0.104 0.896 13 C -0.103 4.103 14 C -0.105 4.105 15 C 0.094 3.906 16 H 0.098 0.902 17 C 0.180 3.820 18 N -0.606 5.606 19 C 0.603 3.397 20 O -0.567 6.567 21 C -0.009 4.009 22 C -0.086 4.086 23 C -0.069 4.069 24 O -0.180 6.180 25 C 0.036 3.964 26 C -0.221 4.221 27 C 0.002 3.998 28 N -0.531 5.531 29 H 0.425 0.575 30 H 0.250 0.750 31 H 0.078 0.922 32 H -0.006 1.006 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.076 0.924 37 H -0.011 1.011 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.265 0.735 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 -7.145 10.615 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.795 3.205 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.385 4.385 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.010 3.990 11 C 0.016 3.984 12 H 0.122 0.878 13 C -0.141 4.141 14 C -0.143 4.143 15 C -0.011 4.011 16 H 0.115 0.885 17 C 0.053 3.947 18 N -0.337 5.337 19 C 0.394 3.606 20 O -0.447 6.447 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.120 4.120 24 O -0.078 6.078 25 C -0.031 4.031 26 C -0.243 4.243 27 C -0.112 4.112 28 N -0.140 5.140 29 H 0.271 0.729 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.011 0.989 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.007 0.993 38 H 0.095 0.905 39 H 0.183 0.817 40 H 0.281 0.719 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.779 -7.759 10.282 14.118 hybrid contribution 0.299 1.700 -0.618 1.833 sum -5.480 -6.059 9.664 12.654 Atomic orbital electron populations 1.70134 1.06613 1.25926 1.55846 1.25722 0.95966 1.01226 1.01042 0.85292 0.78306 0.79678 0.77236 1.21980 1.22098 1.18994 1.19519 0.92435 0.84796 1.41784 0.90632 1.43990 1.30738 1.02094 1.54827 1.21412 0.98372 0.86232 0.92992 1.22951 0.80811 0.99171 0.95502 0.87776 1.22276 0.97291 0.99198 0.95325 1.22349 0.92150 1.01608 0.98190 1.23552 0.99999 0.83187 0.94326 0.88454 1.21107 0.87667 0.95976 0.89931 1.49163 1.15545 1.17085 1.51943 1.16609 0.82730 0.82427 0.78851 1.90791 1.78940 1.28042 1.46976 1.20083 0.94377 0.86082 1.11560 1.19954 0.87069 0.99666 1.04728 1.19312 0.86798 0.94341 1.11517 1.84016 1.21207 1.35444 1.67166 1.25105 1.00256 0.80369 0.97389 1.21032 0.89404 1.02990 1.10827 1.19736 0.88137 0.96269 1.07054 1.42066 1.09550 1.10557 1.51795 0.72934 0.94037 0.90334 0.98852 0.89849 0.90053 0.89828 0.90536 0.99299 0.90474 0.81692 0.71939 0.80535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.69 11.07 21.65 0.24 -51.45 16 2 C -0.04 -2.28 4.99 84.86 0.42 -1.85 16 3 Si 0.97 41.77 29.58 68.60 2.03 43.80 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.26 -12.74 9.63 84.03 0.81 -11.93 16 8 H 0.08 3.63 7.86 -2.91 -0.02 3.61 16 9 N -0.59 -27.18 2.26 -697.24 -1.58 -28.75 16 10 C 0.14 5.54 5.98 86.71 0.52 6.05 16 11 C 0.12 4.08 4.13 45.47 0.19 4.26 16 12 H 0.10 3.40 7.90 -2.39 -0.02 3.38 16 13 C -0.10 -2.97 6.18 31.55 0.20 -2.78 16 14 C -0.10 -3.11 6.21 31.70 0.20 -2.91 16 15 C 0.09 3.18 3.20 45.62 0.15 3.32 16 16 H 0.10 2.93 5.14 -2.39 -0.01 2.91 16 17 C 0.18 7.83 4.28 86.55 0.37 8.20 16 18 N -0.61 -21.68 2.74 -760.48 -2.09 -23.76 16 19 C 0.60 22.98 7.86 86.39 0.68 23.66 16 20 O -0.57 -24.04 17.18 -4.45 -0.08 -24.12 16 21 C -0.01 -0.30 6.84 40.19 0.27 -0.03 16 22 C -0.09 -2.79 10.59 22.57 0.24 -2.55 16 23 C -0.07 -2.09 8.20 22.90 0.19 -1.90 16 24 O -0.18 -4.52 10.68 -11.49 -0.12 -4.65 16 25 C 0.04 0.60 12.02 66.96 0.80 1.40 16 26 C -0.22 -4.69 10.89 22.19 0.24 -4.45 16 27 C 0.00 0.07 8.11 39.32 0.32 0.39 16 28 N -0.53 -16.90 5.46 -176.20 -0.96 -17.86 16 29 H 0.43 13.24 5.19 -92.71 -0.48 12.76 16 30 H 0.25 13.49 8.31 -92.71 -0.77 12.71 16 31 H 0.08 2.95 7.94 -2.39 -0.02 2.93 16 32 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.45 7.84 -2.39 -0.02 2.43 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.52 7.85 -2.38 -0.02 2.50 16 37 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 38 H 0.08 3.68 6.27 -2.39 -0.01 3.66 16 39 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.27 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -67.12 330.41 3.63 -63.49 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.59 Total: 24.41 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 5.59 Total: 18.89 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.39 Total: -121.83 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.20 Total: -28.76 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -67.12 3.63 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017594382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.306 kcal (2) G-P(sol) polarization free energy of solvation -67.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds