Wall clock time and date at job start Tue Mar 31 2020 10:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00032 * 2 1 4 4 H 1.48503 * 109.46917 * 269.99325 * 3 2 1 5 5 H 1.48492 * 109.47181 * 29.99800 * 3 2 1 6 6 H 1.48501 * 109.47180 * 149.99941 * 3 2 1 7 7 C 1.38817 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99648 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.65069 * 14.73355 * 9 7 2 11 11 C 1.54910 * 104.83700 * 155.89186 * 10 9 7 12 12 C 1.55155 * 101.57837 * 37.00937 * 11 10 9 13 13 C 1.47027 * 125.64668 * 194.75864 * 9 7 2 14 14 H 1.09002 * 110.01193 * 300.52608 * 13 9 7 15 15 C 1.52998 * 109.88293 * 61.62172 * 13 9 7 16 16 N 1.46501 * 109.46956 * 182.39484 * 15 13 9 17 17 C 1.34776 * 120.00014 * 185.13238 * 16 15 13 18 18 O 1.21658 * 120.00022 * 0.02562 * 17 16 15 19 19 C 1.46979 * 120.00038 * 180.02562 * 17 16 15 20 20 C 1.35851 * 125.12258 * 180.02562 * 19 17 16 21 21 C 1.46092 * 106.07113 * 179.73263 * 20 19 17 22 22 C 1.39452 * 135.07012 * 180.02562 * 21 20 19 23 23 N 1.31681 * 120.06860 * 179.97438 * 22 21 20 24 24 C 1.32302 * 122.14769 * 0.02562 * 23 22 21 25 25 C 1.37759 * 121.58036 * 0.02562 * 24 23 22 26 26 C 1.39240 * 118.95688 * 0.02562 * 25 24 23 27 27 O 1.34275 * 134.37727 * 180.02562 * 26 25 24 28 28 H 0.96994 * 120.00115 * 0.02562 * 1 2 3 29 29 H 1.09008 * 110.36554 * 37.05188 * 10 9 7 30 30 H 1.09005 * 110.46013 * 274.78130 * 10 9 7 31 31 H 1.08999 * 111.00138 * 278.94124 * 11 10 9 32 32 H 1.08990 * 111.00574 * 155.08282 * 11 10 9 33 33 H 1.09000 * 110.72342 * 206.13883 * 12 11 10 34 34 H 1.08999 * 110.72143 * 82.86136 * 12 11 10 35 35 H 1.09007 * 109.47214 * 62.39900 * 15 13 9 36 36 H 1.09001 * 109.47034 * 302.39493 * 15 13 9 37 37 H 0.97005 * 120.00117 * 5.13590 * 16 15 13 38 38 H 1.07997 * 126.96067 * 359.69720 * 20 19 17 39 39 H 1.07993 * 119.96503 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.21302 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.52020 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1072 -2.5530 -0.3046 11 6 -0.2460 -4.0223 -0.7753 12 6 0.7640 -4.7441 0.1554 13 6 1.8976 -3.7077 0.3054 14 1 2.7029 -3.9356 -0.3929 15 6 2.4319 -3.7247 1.7390 16 7 3.0505 -5.0238 2.0142 17 6 3.5003 -5.3072 3.2527 18 8 3.3922 -4.4843 4.1422 19 6 4.1215 -6.6104 3.5287 20 6 4.6085 -7.0045 4.7341 21 6 5.1190 -8.3595 4.5406 22 6 5.7318 -9.3096 5.3570 23 7 6.0832 -10.4777 4.8609 24 6 5.8756 -10.7954 3.5934 25 6 5.2775 -9.9161 2.7179 26 6 4.8843 -8.6640 3.1833 27 8 4.2924 -7.5971 2.6226 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4068 -1.8701 -1.0997 30 1 -0.7091 -2.3821 0.5880 31 1 0.0431 -4.1265 -1.8211 32 1 -1.2589 -4.3906 -0.6130 33 1 1.1349 -5.6564 -0.3117 34 1 0.3100 -4.9617 1.1222 35 1 1.6096 -3.5591 2.4352 36 1 3.1744 -2.9358 1.8593 37 1 3.1365 -5.6801 1.3050 38 1 4.6170 -6.4318 5.6497 39 1 5.9185 -9.0872 6.3972 40 1 6.1826 -11.7675 3.2367 41 1 5.1167 -10.1931 1.6864 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027998253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:23 Heat of formation + Delta-G solvation = 10.105027 kcal Electronic energy + Delta-G solvation = -25200.679458 eV Core-core repulsion = 21467.969060 eV Total energy + Delta-G solvation = -3732.710398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.84462 -40.93089 -39.94769 -39.28468 -35.99539 -34.44821 -34.10779 -32.81033 -31.64330 -31.18192 -30.19094 -26.99220 -26.34056 -24.98461 -24.41860 -22.97725 -22.15701 -21.79384 -21.25055 -19.76575 -19.05869 -18.59715 -17.74765 -17.50879 -16.90605 -16.79629 -16.56941 -16.31293 -15.95686 -15.68813 -15.52163 -15.01436 -14.75388 -14.45506 -14.43176 -14.30303 -13.98858 -13.68083 -13.45674 -13.03120 -12.89303 -12.66885 -12.64217 -12.04474 -11.95535 -11.78376 -11.59201 -11.52507 -11.50892 -11.42771 -10.79050 -10.69140 -10.57196 -10.30198 -9.51010 -8.88478 -7.89971 -5.27983 -0.69822 0.11870 0.59320 1.13047 1.44257 1.46185 1.54449 1.90848 1.92482 2.47998 2.67771 3.15798 3.29755 3.31881 3.47553 3.71064 3.73766 3.82350 3.91733 3.94286 4.13752 4.23451 4.29843 4.40444 4.50115 4.62343 4.66460 4.69202 4.83501 4.89625 4.96607 4.99179 5.07290 5.12391 5.22811 5.31483 5.45047 5.51124 5.64676 5.68376 5.76924 6.20785 6.31054 6.85232 6.87546 7.07434 7.74023 8.39968 9.20965 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.002680 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.172567 B =10444.464203 C =11149.652647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.126 3.874 16 N -0.692 5.692 17 C 0.594 3.406 18 O -0.554 6.554 19 C -0.039 4.039 20 C -0.087 4.087 21 C -0.216 4.216 22 C 0.177 3.823 23 N -0.512 5.512 24 C 0.123 3.877 25 C -0.160 4.160 26 C 0.087 3.913 27 O -0.182 6.182 28 H 0.248 0.752 29 H 0.036 0.964 30 H -0.007 1.007 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.418 0.582 38 H 0.187 0.813 39 H 0.191 0.809 40 H 0.205 0.795 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -23.910 4.703 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.040 3.960 14 H 0.070 0.930 15 C 0.000 4.000 16 N -0.343 5.343 17 C 0.380 3.620 18 O -0.434 6.434 19 C -0.089 4.089 20 C -0.109 4.109 21 C -0.219 4.219 22 C 0.014 3.986 23 N -0.223 5.223 24 C -0.027 4.027 25 C -0.180 4.180 26 C 0.032 3.968 27 O -0.082 6.082 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.255 0.745 38 H 0.204 0.796 39 H 0.208 0.792 40 H 0.222 0.778 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.871 -23.688 5.454 26.235 hybrid contribution -0.290 2.068 -0.612 2.176 sum 9.582 -21.620 4.842 24.138 Atomic orbital electron populations 1.70134 1.06304 1.25459 1.57372 1.25692 0.96503 1.01022 1.02039 0.85182 0.77724 0.79486 0.77585 1.20924 1.22198 1.19674 1.19306 0.90787 0.83503 1.43436 0.90418 1.44734 1.06895 1.02087 1.79644 1.21274 0.84081 0.93395 0.96410 1.22871 0.99613 0.95340 0.99325 1.22613 0.95291 0.97369 0.99980 1.21334 0.96127 0.86874 0.91632 0.92954 1.21895 0.96218 0.82883 0.98997 1.45807 1.59075 1.18609 1.10789 1.16884 0.78134 0.83719 0.83277 1.90894 1.58524 1.47746 1.46268 1.21788 1.07726 0.89728 0.89626 1.22953 0.96328 0.93362 0.98262 1.21083 1.08078 0.96838 0.95912 1.22886 0.89113 0.86077 1.00569 1.67910 1.19680 1.18797 1.15866 1.23275 0.91953 1.00042 0.87387 1.21460 1.03343 0.88788 1.04456 1.20387 0.94973 0.89474 0.91980 1.83939 1.65409 1.21185 1.37691 0.94269 0.94535 0.98848 0.91088 0.89898 0.87952 0.91607 0.93451 0.93716 0.74516 0.79576 0.79222 0.77837 0.80854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.60 10.58 21.65 0.23 -56.37 16 2 C -0.06 -3.32 5.47 84.86 0.46 -2.86 16 3 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -13.26 9.76 84.04 0.82 -12.44 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.61 -30.10 3.13 -668.22 -2.09 -32.19 16 10 C 0.17 8.32 5.41 86.86 0.47 8.79 16 11 C -0.13 -4.52 7.09 31.99 0.23 -4.29 16 12 C -0.11 -3.43 6.10 31.78 0.19 -3.24 16 13 C 0.15 5.54 3.22 45.34 0.15 5.69 16 14 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 15 C 0.13 4.75 5.07 86.38 0.44 5.18 16 16 N -0.69 -20.24 5.32 -466.79 -2.49 -22.73 16 17 C 0.59 18.49 7.79 86.53 0.67 19.16 16 18 O -0.55 -21.47 16.82 -4.22 -0.07 -21.54 16 19 C -0.04 -0.98 7.07 24.01 0.17 -0.82 16 20 C -0.09 -1.87 10.80 23.75 0.26 -1.62 16 21 C -0.22 -4.10 6.43 -20.25 -0.13 -4.24 16 22 C 0.18 2.72 11.28 85.01 0.96 3.67 16 23 N -0.51 -8.04 10.34 -195.04 -2.02 -10.06 16 24 C 0.12 1.39 11.13 84.51 0.94 2.33 16 25 C -0.16 -2.05 10.13 22.40 0.23 -1.82 16 26 C 0.09 1.68 7.48 23.21 0.17 1.86 16 27 O -0.18 -4.04 10.26 -9.68 -0.10 -4.14 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.04 1.98 6.94 -2.38 -0.02 1.97 16 30 H -0.01 -0.35 8.06 -2.38 -0.02 -0.37 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 1.97 7.81 -2.39 -0.02 1.96 16 35 H 0.05 2.02 8.08 -2.38 -0.02 2.00 16 36 H 0.04 1.93 7.92 -2.39 -0.02 1.91 16 37 H 0.42 9.61 8.05 -92.70 -0.75 8.87 16 38 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -72.88 349.35 1.84 -71.04 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.32 Total: 12.60 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.03 Total: 15.36 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.36 Total: -121.34 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.17 Total: -25.68 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -72.88 1.84 -71.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.148 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds