Wall clock time and date at job start Tue Mar 31 2020 10:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00063 * 2 1 4 4 H 1.48505 * 109.46844 * 269.99835 * 3 2 1 5 5 H 1.48505 * 109.47398 * 29.99331 * 3 2 1 6 6 H 1.48494 * 109.47416 * 149.99941 * 3 2 1 7 7 C 1.38810 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.65037 * 345.82482 * 9 7 2 11 11 C 1.54910 * 104.83296 * 204.15034 * 10 9 7 12 12 C 1.55157 * 101.58142 * 322.98418 * 11 10 9 13 13 C 1.47033 * 125.64789 * 165.84428 * 9 7 2 14 14 H 1.08996 * 110.00480 * 59.43185 * 13 9 7 15 15 C 1.52998 * 109.88265 * 298.33977 * 13 9 7 16 16 N 1.46498 * 109.46980 * 176.74466 * 15 13 9 17 17 C 1.34775 * 120.00202 * 174.96903 * 16 15 13 18 18 O 1.21659 * 119.99516 * 359.97438 * 17 16 15 19 19 C 1.46982 * 120.00176 * 179.97438 * 17 16 15 20 20 C 1.35847 * 125.11717 * 180.02562 * 19 17 16 21 21 C 1.46106 * 106.06713 * 179.97438 * 20 19 17 22 22 C 1.39441 * 135.07506 * 180.02562 * 21 20 19 23 23 N 1.31680 * 120.07355 * 179.97438 * 22 21 20 24 24 C 1.32305 * 122.14227 * 0.02671 * 23 22 21 25 25 C 1.37752 * 121.58379 * 0.02562 * 24 23 22 26 26 C 1.39238 * 118.95758 * 359.94025 * 25 24 23 27 27 O 1.34274 * 134.38146 * 180.02562 * 26 25 24 28 28 H 0.96998 * 119.99776 * 0.02562 * 1 2 3 29 29 H 1.08994 * 110.37114 * 85.30630 * 10 9 7 30 30 H 1.09003 * 110.45613 * 323.03061 * 10 9 7 31 31 H 1.08998 * 111.00360 * 204.91114 * 11 10 9 32 32 H 1.08997 * 111.00881 * 81.06052 * 11 10 9 33 33 H 1.08992 * 110.72155 * 277.14101 * 12 11 10 34 34 H 1.09004 * 110.72181 * 153.86437 * 12 11 10 35 35 H 1.08996 * 109.47416 * 56.73857 * 15 13 9 36 36 H 1.09009 * 109.46865 * 296.73892 * 15 13 9 37 37 H 0.97002 * 119.99730 * 354.96381 * 16 15 13 38 38 H 1.07993 * 126.97136 * 359.97062 * 20 19 17 39 39 H 1.07995 * 119.96609 * 359.97420 * 22 21 20 40 40 H 1.07997 * 119.20967 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.52518 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1101 -2.5513 0.2934 11 6 -0.2530 -4.0178 0.7715 12 6 0.7655 -4.7451 -0.1455 13 6 1.9004 -3.7095 -0.2911 14 1 2.6992 -3.9329 0.4160 15 6 2.4480 -3.7349 -1.7196 16 7 3.0873 -5.0281 -1.9745 17 6 3.5542 -5.3182 -3.2050 18 8 3.4443 -4.5062 -4.1043 19 6 4.1962 -6.6154 -3.4606 20 6 4.7023 -7.0148 -4.6564 21 6 5.2354 -8.3581 -4.4415 22 6 5.8742 -9.3061 -5.2399 23 7 6.2423 -10.4613 -4.7261 24 6 6.0269 -10.7680 -3.4573 25 6 5.4014 -9.8906 -2.5991 26 6 4.9893 -8.6520 -3.0838 27 8 4.3709 -7.5902 -2.5425 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7021 -2.3864 -0.6068 30 1 -0.4189 -1.8638 1.0809 31 1 -1.2644 -4.3872 0.6021 32 1 0.0263 -4.1158 1.8206 33 1 0.3206 -4.9686 -1.1150 34 1 1.1323 -5.6546 0.3306 35 1 3.1803 -2.9370 -1.8423 36 1 1.6298 -3.5889 -2.4249 37 1 3.1747 -5.6757 -1.2575 38 1 4.7091 -6.4534 -5.5789 39 1 6.0674 -9.0928 -6.2808 40 1 6.3483 -11.7297 -3.0856 41 1 5.2346 -10.1585 -1.5662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027998254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:26 Heat of formation + Delta-G solvation = 31.514423 kcal Electronic energy + Delta-G solvation = -25196.063290 eV Core-core repulsion = 21464.281273 eV Total energy + Delta-G solvation = -3731.782017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.03308 -39.75584 -39.10715 -37.69205 -34.55866 -33.29343 -32.55540 -32.08367 -30.49281 -29.64946 -28.72190 -25.64727 -24.67584 -23.91885 -23.44468 -22.09974 -20.92712 -20.25145 -19.73971 -18.52010 -18.31806 -16.85834 -16.75107 -16.34481 -15.96650 -15.72659 -15.07375 -14.88774 -14.83163 -14.51345 -14.04681 -13.87509 -13.78424 -13.52013 -13.36191 -13.12854 -12.16018 -11.97937 -11.94831 -11.83296 -11.40991 -10.99516 -10.83786 -10.73767 -10.42457 -10.32075 -10.13979 -10.12046 -9.95736 -9.87786 -9.80881 -9.74566 -8.98924 -8.69411 -8.63167 -6.90616 -5.81744 -3.18890 0.09070 0.83536 1.45010 2.01365 3.04923 3.08803 3.33568 3.37379 3.43005 3.43843 3.95100 3.99836 4.22663 4.44725 4.46951 4.60083 4.85010 4.99268 5.25116 5.25212 5.32183 5.33857 5.43951 5.52759 5.55961 5.74690 5.76464 5.93589 5.97285 6.04612 6.17980 6.36750 6.39231 6.42820 6.51046 6.61610 6.69882 6.95630 7.46395 7.48602 7.49642 7.56213 7.74516 8.06929 8.20349 9.11956 9.72377 10.39130 11.30006 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.002679 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.593003 B =10447.331914 C =11145.368176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.587 5.587 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.105 3.895 16 N -0.704 5.704 17 C 0.590 3.410 18 O -0.512 6.512 19 C -0.014 4.014 20 C -0.105 4.105 21 C -0.198 4.198 22 C 0.174 3.826 23 N -0.495 5.495 24 C 0.115 3.885 25 C -0.160 4.160 26 C 0.102 3.898 27 O -0.178 6.178 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.332 -20.468 -4.736 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.019 4.019 16 N -0.354 5.354 17 C 0.373 3.627 18 O -0.390 6.390 19 C -0.064 4.064 20 C -0.127 4.127 21 C -0.201 4.201 22 C 0.010 3.990 23 N -0.205 5.205 24 C -0.035 4.035 25 C -0.180 4.180 26 C 0.047 3.953 27 O -0.077 6.077 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.194 0.806 39 H 0.184 0.816 40 H 0.187 0.813 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.466 -20.185 -5.487 22.566 hybrid contribution 0.083 1.207 0.712 1.404 sum 8.549 -18.978 -4.775 21.355 Atomic orbital electron populations 1.69936 1.05042 1.25409 1.55648 1.24919 0.95693 0.97922 1.01248 0.86138 0.78713 0.83272 0.77749 1.21337 1.21603 1.20552 1.18985 0.90415 0.82138 1.44952 0.90594 1.44492 1.06134 1.00808 1.79734 1.21474 0.84633 0.90268 0.98936 1.23008 0.97523 0.99549 0.98621 1.22623 0.97097 0.96985 0.99850 1.21137 0.94607 0.88255 0.91699 0.94324 1.22459 0.97428 0.82035 1.00014 1.46125 1.58457 1.20381 1.10420 1.16683 0.79008 0.82987 0.84029 1.90922 1.57342 1.46502 1.44203 1.22452 1.05074 0.90340 0.88513 1.22697 0.98324 0.93045 0.98677 1.20984 1.06571 0.97178 0.95394 1.22471 0.90212 0.86664 0.99650 1.67811 1.19617 1.18895 1.14174 1.22617 0.93697 0.98857 0.88312 1.21071 1.03686 0.90328 1.02929 1.19883 0.94545 0.89104 0.91806 1.83994 1.63771 1.21894 1.38075 0.93527 0.95572 0.90785 0.92278 0.92246 0.91793 0.92330 0.90833 0.90969 0.76323 0.80584 0.81581 0.81348 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.21 10.56 55.49 0.59 -25.62 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.34 9.75 -15.06 -0.15 -6.49 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.22 3.13 -162.57 -0.51 -14.73 16 10 C 0.17 4.00 5.42 -2.53 -0.01 3.99 16 11 C -0.15 -2.65 7.08 -24.58 -0.17 -2.82 16 12 C -0.13 -2.07 6.14 -24.89 -0.15 -2.22 16 13 C 0.15 2.90 3.21 -66.95 -0.21 2.68 16 14 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 15 C 0.11 1.95 5.08 -4.04 -0.02 1.92 16 16 N -0.70 -10.46 5.34 -61.52 -0.33 -10.79 16 17 C 0.59 9.13 7.80 -12.72 -0.10 9.03 16 18 O -0.51 -9.63 16.82 5.23 0.09 -9.55 16 19 C -0.01 -0.18 7.07 -36.90 -0.26 -0.44 16 20 C -0.11 -1.19 10.80 -37.28 -0.40 -1.59 16 21 C -0.20 -2.07 6.43 -105.22 -0.68 -2.75 16 22 C 0.17 1.55 11.28 -17.17 -0.19 1.36 16 23 N -0.49 -4.64 10.34 -13.00 -0.13 -4.77 16 24 C 0.11 0.87 11.13 -17.53 -0.20 0.67 16 25 C -0.16 -1.29 10.13 -39.39 -0.40 -1.69 16 26 C 0.10 1.10 7.48 -38.13 -0.29 0.81 16 27 O -0.18 -2.11 10.26 3.72 0.04 -2.08 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.03 7.80 -51.93 -0.40 0.62 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 36 H 0.07 1.48 8.06 -51.92 -0.42 1.06 16 37 H 0.40 5.00 8.07 -40.82 -0.33 4.67 16 38 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -31.81 349.31 -8.62 -40.42 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.27 Total: 2.74 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -3.33 Total: 2.36 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.39 Total: -55.92 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.13 Total: -11.62 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.81 -8.62 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.937 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds