Wall clock time and date at job start Tue Mar 31 2020 10:54:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86794 * 120.00063 * 2 1
4 4 H 1.48505 * 109.46844 * 269.99835 * 3 2 1
5 5 H 1.48505 * 109.47398 * 29.99331 * 3 2 1
6 6 H 1.48494 * 109.47416 * 149.99941 * 3 2 1
7 7 C 1.38810 * 119.99615 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1
9 9 N 1.36935 * 120.00265 * 0.02562 * 7 2 1
10 10 C 1.47422 * 125.65037 * 345.82482 * 9 7 2
11 11 C 1.54910 * 104.83296 * 204.15034 * 10 9 7
12 12 C 1.55157 * 101.58142 * 322.98418 * 11 10 9
13 13 C 1.47033 * 125.64789 * 165.84428 * 9 7 2
14 14 H 1.08996 * 110.00480 * 59.43185 * 13 9 7
15 15 C 1.52998 * 109.88265 * 298.33977 * 13 9 7
16 16 N 1.46498 * 109.46980 * 176.74466 * 15 13 9
17 17 C 1.34775 * 120.00202 * 174.96903 * 16 15 13
18 18 O 1.21659 * 119.99516 * 359.97438 * 17 16 15
19 19 C 1.46982 * 120.00176 * 179.97438 * 17 16 15
20 20 C 1.35847 * 125.11717 * 180.02562 * 19 17 16
21 21 C 1.46106 * 106.06713 * 179.97438 * 20 19 17
22 22 C 1.39441 * 135.07506 * 180.02562 * 21 20 19
23 23 N 1.31680 * 120.07355 * 179.97438 * 22 21 20
24 24 C 1.32305 * 122.14227 * 0.02671 * 23 22 21
25 25 C 1.37752 * 121.58379 * 0.02562 * 24 23 22
26 26 C 1.39238 * 118.95758 * 359.94025 * 25 24 23
27 27 O 1.34274 * 134.38146 * 180.02562 * 26 25 24
28 28 H 0.96998 * 119.99776 * 0.02562 * 1 2 3
29 29 H 1.08994 * 110.37114 * 85.30630 * 10 9 7
30 30 H 1.09003 * 110.45613 * 323.03061 * 10 9 7
31 31 H 1.08998 * 111.00360 * 204.91114 * 11 10 9
32 32 H 1.08997 * 111.00881 * 81.06052 * 11 10 9
33 33 H 1.08992 * 110.72155 * 277.14101 * 12 11 10
34 34 H 1.09004 * 110.72181 * 153.86437 * 12 11 10
35 35 H 1.08996 * 109.47416 * 56.73857 * 15 13 9
36 36 H 1.09009 * 109.46865 * 296.73892 * 15 13 9
37 37 H 0.97002 * 119.99730 * 354.96381 * 16 15 13
38 38 H 1.07993 * 126.97136 * 359.97062 * 20 19 17
39 39 H 1.07995 * 119.96609 * 359.97420 * 22 21 20
40 40 H 1.07997 * 119.20967 * 179.97438 * 24 23 22
41 41 H 1.08003 * 120.52518 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0005
10 6 -0.1101 -2.5513 0.2934
11 6 -0.2530 -4.0178 0.7715
12 6 0.7655 -4.7451 -0.1455
13 6 1.9004 -3.7095 -0.2911
14 1 2.6992 -3.9329 0.4160
15 6 2.4480 -3.7349 -1.7196
16 7 3.0873 -5.0281 -1.9745
17 6 3.5542 -5.3182 -3.2050
18 8 3.4443 -4.5062 -4.1043
19 6 4.1962 -6.6154 -3.4606
20 6 4.7023 -7.0148 -4.6564
21 6 5.2354 -8.3581 -4.4415
22 6 5.8742 -9.3061 -5.2399
23 7 6.2423 -10.4613 -4.7261
24 6 6.0269 -10.7680 -3.4573
25 6 5.4014 -9.8906 -2.5991
26 6 4.9893 -8.6520 -3.0838
27 8 4.3709 -7.5902 -2.5425
28 1 -0.4850 0.8400 -0.0004
29 1 -0.7021 -2.3864 -0.6068
30 1 -0.4189 -1.8638 1.0809
31 1 -1.2644 -4.3872 0.6021
32 1 0.0263 -4.1158 1.8206
33 1 0.3206 -4.9686 -1.1150
34 1 1.1323 -5.6546 0.3306
35 1 3.1803 -2.9370 -1.8423
36 1 1.6298 -3.5889 -2.4249
37 1 3.1747 -5.6757 -1.2575
38 1 4.7091 -6.4534 -5.5789
39 1 6.0674 -9.0928 -6.2808
40 1 6.3483 -11.7297 -3.0856
41 1 5.2346 -10.1585 -1.5662
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027998254.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:26
Heat of formation + Delta-G solvation = 31.514423 kcal
Electronic energy + Delta-G solvation = -25196.063290 eV
Core-core repulsion = 21464.281273 eV
Total energy + Delta-G solvation = -3731.782017 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-43.03308 -39.75584 -39.10715 -37.69205 -34.55866 -33.29343 -32.55540 -32.08367
-30.49281 -29.64946 -28.72190 -25.64727 -24.67584 -23.91885 -23.44468 -22.09974
-20.92712 -20.25145 -19.73971 -18.52010 -18.31806 -16.85834 -16.75107 -16.34481
-15.96650 -15.72659 -15.07375 -14.88774 -14.83163 -14.51345 -14.04681 -13.87509
-13.78424 -13.52013 -13.36191 -13.12854 -12.16018 -11.97937 -11.94831 -11.83296
-11.40991 -10.99516 -10.83786 -10.73767 -10.42457 -10.32075 -10.13979 -10.12046
-9.95736 -9.87786 -9.80881 -9.74566 -8.98924 -8.69411 -8.63167 -6.90616
-5.81744 -3.18890 0.09070 0.83536 1.45010 2.01365 3.04923 3.08803
3.33568 3.37379 3.43005 3.43843 3.95100 3.99836 4.22663 4.44725
4.46951 4.60083 4.85010 4.99268 5.25116 5.25212 5.32183 5.33857
5.43951 5.52759 5.55961 5.74690 5.76464 5.93589 5.97285 6.04612
6.17980 6.36750 6.39231 6.42820 6.51046 6.61610 6.69882 6.95630
7.46395 7.48602 7.49642 7.56213 7.74516 8.06929 8.20349 9.11956
9.72377 10.39130 11.30006
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.023552 B = 0.002679 C = 0.002512
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1188.593003 B =10447.331914 C =11145.368176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.000 4.000
3 Si 0.911 3.089
4 H -0.286 1.286
5 H -0.290 1.290
6 H -0.280 1.280
7 C -0.237 4.237
8 H 0.076 0.924
9 N -0.587 5.587
10 C 0.172 3.828
11 C -0.148 4.148
12 C -0.128 4.128
13 C 0.152 3.848
14 H 0.039 0.961
15 C 0.105 3.895
16 N -0.704 5.704
17 C 0.590 3.410
18 O -0.512 6.512
19 C -0.014 4.014
20 C -0.105 4.105
21 C -0.198 4.198
22 C 0.174 3.826
23 N -0.495 5.495
24 C 0.115 3.885
25 C -0.160 4.160
26 C 0.102 3.898
27 O -0.178 6.178
28 H 0.254 0.746
29 H 0.026 0.974
30 H 0.074 0.926
31 H 0.059 0.941
32 H 0.059 0.941
33 H 0.063 0.937
34 H 0.058 0.942
35 H 0.073 0.927
36 H 0.072 0.928
37 H 0.402 0.598
38 H 0.177 0.823
39 H 0.167 0.833
40 H 0.169 0.831
41 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.332 -20.468 -4.736 22.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.198 4.198
3 Si 0.741 3.259
4 H -0.213 1.213
5 H -0.216 1.216
6 H -0.206 1.206
7 C -0.365 4.365
8 H 0.094 0.906
9 N -0.312 5.312
10 C 0.047 3.953
11 C -0.187 4.187
12 C -0.166 4.166
13 C 0.043 3.957
14 H 0.057 0.943
15 C -0.019 4.019
16 N -0.354 5.354
17 C 0.373 3.627
18 O -0.390 6.390
19 C -0.064 4.064
20 C -0.127 4.127
21 C -0.201 4.201
22 C 0.010 3.990
23 N -0.205 5.205
24 C -0.035 4.035
25 C -0.180 4.180
26 C 0.047 3.953
27 O -0.077 6.077
28 H 0.065 0.935
29 H 0.044 0.956
30 H 0.092 0.908
31 H 0.077 0.923
32 H 0.078 0.922
33 H 0.082 0.918
34 H 0.077 0.923
35 H 0.092 0.908
36 H 0.090 0.910
37 H 0.237 0.763
38 H 0.194 0.806
39 H 0.184 0.816
40 H 0.187 0.813
41 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 8.466 -20.185 -5.487 22.566
hybrid contribution 0.083 1.207 0.712 1.404
sum 8.549 -18.978 -4.775 21.355
Atomic orbital electron populations
1.69936 1.05042 1.25409 1.55648 1.24919 0.95693 0.97922 1.01248
0.86138 0.78713 0.83272 0.77749 1.21337 1.21603 1.20552 1.18985
0.90415 0.82138 1.44952 0.90594 1.44492 1.06134 1.00808 1.79734
1.21474 0.84633 0.90268 0.98936 1.23008 0.97523 0.99549 0.98621
1.22623 0.97097 0.96985 0.99850 1.21137 0.94607 0.88255 0.91699
0.94324 1.22459 0.97428 0.82035 1.00014 1.46125 1.58457 1.20381
1.10420 1.16683 0.79008 0.82987 0.84029 1.90922 1.57342 1.46502
1.44203 1.22452 1.05074 0.90340 0.88513 1.22697 0.98324 0.93045
0.98677 1.20984 1.06571 0.97178 0.95394 1.22471 0.90212 0.86664
0.99650 1.67811 1.19617 1.18895 1.14174 1.22617 0.93697 0.98857
0.88312 1.21071 1.03686 0.90328 1.02929 1.19883 0.94545 0.89104
0.91806 1.83994 1.63771 1.21894 1.38075 0.93527 0.95572 0.90785
0.92278 0.92246 0.91793 0.92330 0.90833 0.90969 0.76323 0.80584
0.81581 0.81348 0.83501
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -26.21 10.56 55.49 0.59 -25.62 16
2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16
3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16
4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
7 C -0.24 -6.34 9.75 -15.06 -0.15 -6.49 16
8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16
9 N -0.59 -14.22 3.13 -162.57 -0.51 -14.73 16
10 C 0.17 4.00 5.42 -2.53 -0.01 3.99 16
11 C -0.15 -2.65 7.08 -24.58 -0.17 -2.82 16
12 C -0.13 -2.07 6.14 -24.89 -0.15 -2.22 16
13 C 0.15 2.90 3.21 -66.95 -0.21 2.68 16
14 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
15 C 0.11 1.95 5.08 -4.04 -0.02 1.92 16
16 N -0.70 -10.46 5.34 -61.52 -0.33 -10.79 16
17 C 0.59 9.13 7.80 -12.72 -0.10 9.03 16
18 O -0.51 -9.63 16.82 5.23 0.09 -9.55 16
19 C -0.01 -0.18 7.07 -36.90 -0.26 -0.44 16
20 C -0.11 -1.19 10.80 -37.28 -0.40 -1.59 16
21 C -0.20 -2.07 6.43 -105.22 -0.68 -2.75 16
22 C 0.17 1.55 11.28 -17.17 -0.19 1.36 16
23 N -0.49 -4.64 10.34 -13.00 -0.13 -4.77 16
24 C 0.11 0.87 11.13 -17.53 -0.20 0.67 16
25 C -0.16 -1.29 10.13 -39.39 -0.40 -1.69 16
26 C 0.10 1.10 7.48 -38.13 -0.29 0.81 16
27 O -0.18 -2.11 10.26 3.72 0.04 -2.08 16
28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16
29 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16
30 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16
31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
33 H 0.06 1.03 7.80 -51.93 -0.40 0.62 16
34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
35 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16
36 H 0.07 1.48 8.06 -51.92 -0.42 1.06 16
37 H 0.40 5.00 8.07 -40.82 -0.33 4.67 16
38 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16
39 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16
40 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16
41 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16
LS Contribution 349.31 15.07 5.26 5.26
Total: -1.00 -31.81 349.31 -8.62 -40.42
By element:
Atomic # 1 Polarization: 8.01 SS G_CDS: -5.27 Total: 2.74 kcal
Atomic # 6 Polarization: 5.69 SS G_CDS: -3.33 Total: 2.36 kcal
Atomic # 7 Polarization: -55.53 SS G_CDS: -0.39 Total: -55.92 kcal
Atomic # 8 Polarization: -11.75 SS G_CDS: 0.13 Total: -11.62 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -31.81 -8.62 -40.42 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027998254.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.937 kcal
(2) G-P(sol) polarization free energy of solvation -31.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.132 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds