Wall clock time and date at job start Tue Mar 31 2020 10:54:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86794 * 120.00063 * 2 1
4 4 H 1.48505 * 109.46844 * 269.99835 * 3 2 1
5 5 H 1.48505 * 109.47398 * 29.99331 * 3 2 1
6 6 H 1.48494 * 109.47416 * 149.99941 * 3 2 1
7 7 C 1.38810 * 119.99615 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1
9 9 N 1.36935 * 120.00265 * 0.02562 * 7 2 1
10 10 C 1.47422 * 125.65037 * 345.82482 * 9 7 2
11 11 C 1.54910 * 104.83296 * 204.15034 * 10 9 7
12 12 C 1.55157 * 101.58142 * 322.98418 * 11 10 9
13 13 C 1.47033 * 125.64789 * 165.84428 * 9 7 2
14 14 H 1.08996 * 110.00480 * 59.43185 * 13 9 7
15 15 C 1.52998 * 109.88265 * 298.33977 * 13 9 7
16 16 N 1.46498 * 109.46980 * 176.74466 * 15 13 9
17 17 C 1.34775 * 120.00202 * 174.96903 * 16 15 13
18 18 O 1.21659 * 119.99516 * 359.97438 * 17 16 15
19 19 C 1.46982 * 120.00176 * 179.97438 * 17 16 15
20 20 C 1.35847 * 125.11717 * 180.02562 * 19 17 16
21 21 C 1.46106 * 106.06713 * 179.97438 * 20 19 17
22 22 C 1.39441 * 135.07506 * 180.02562 * 21 20 19
23 23 N 1.31680 * 120.07355 * 179.97438 * 22 21 20
24 24 C 1.32305 * 122.14227 * 0.02671 * 23 22 21
25 25 C 1.37752 * 121.58379 * 0.02562 * 24 23 22
26 26 C 1.39238 * 118.95758 * 359.94025 * 25 24 23
27 27 O 1.34274 * 134.38146 * 180.02562 * 26 25 24
28 28 H 0.96998 * 119.99776 * 0.02562 * 1 2 3
29 29 H 1.08994 * 110.37114 * 85.30630 * 10 9 7
30 30 H 1.09003 * 110.45613 * 323.03061 * 10 9 7
31 31 H 1.08998 * 111.00360 * 204.91114 * 11 10 9
32 32 H 1.08997 * 111.00881 * 81.06052 * 11 10 9
33 33 H 1.08992 * 110.72155 * 277.14101 * 12 11 10
34 34 H 1.09004 * 110.72181 * 153.86437 * 12 11 10
35 35 H 1.08996 * 109.47416 * 56.73857 * 15 13 9
36 36 H 1.09009 * 109.46865 * 296.73892 * 15 13 9
37 37 H 0.97002 * 119.99730 * 354.96381 * 16 15 13
38 38 H 1.07993 * 126.97136 * 359.97062 * 20 19 17
39 39 H 1.07995 * 119.96609 * 359.97420 * 22 21 20
40 40 H 1.07997 * 119.20967 * 179.97438 * 24 23 22
41 41 H 1.08003 * 120.52518 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0005
10 6 -0.1101 -2.5513 0.2934
11 6 -0.2530 -4.0178 0.7715
12 6 0.7655 -4.7451 -0.1455
13 6 1.9004 -3.7095 -0.2911
14 1 2.6992 -3.9329 0.4160
15 6 2.4480 -3.7349 -1.7196
16 7 3.0873 -5.0281 -1.9745
17 6 3.5542 -5.3182 -3.2050
18 8 3.4443 -4.5062 -4.1043
19 6 4.1962 -6.6154 -3.4606
20 6 4.7023 -7.0148 -4.6564
21 6 5.2354 -8.3581 -4.4415
22 6 5.8742 -9.3061 -5.2399
23 7 6.2423 -10.4613 -4.7261
24 6 6.0269 -10.7680 -3.4573
25 6 5.4014 -9.8906 -2.5991
26 6 4.9893 -8.6520 -3.0838
27 8 4.3709 -7.5902 -2.5425
28 1 -0.4850 0.8400 -0.0004
29 1 -0.7021 -2.3864 -0.6068
30 1 -0.4189 -1.8638 1.0809
31 1 -1.2644 -4.3872 0.6021
32 1 0.0263 -4.1158 1.8206
33 1 0.3206 -4.9686 -1.1150
34 1 1.1323 -5.6546 0.3306
35 1 3.1803 -2.9370 -1.8423
36 1 1.6298 -3.5889 -2.4249
37 1 3.1747 -5.6757 -1.2575
38 1 4.7091 -6.4534 -5.5789
39 1 6.0674 -9.0928 -6.2808
40 1 6.3483 -11.7297 -3.0856
41 1 5.2346 -10.1585 -1.5662
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001027998254.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:25
Heat of formation + Delta-G solvation = 10.267058 kcal
Electronic energy + Delta-G solvation = -25196.984645 eV
Core-core repulsion = 21464.281273 eV
Total energy + Delta-G solvation = -3732.703372 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-43.84547 -40.93107 -39.94871 -39.28530 -35.99614 -34.44942 -34.10812 -32.81106
-31.64368 -31.18142 -30.19136 -26.99227 -26.34109 -24.98397 -24.41876 -22.97657
-22.15352 -21.79880 -21.25548 -19.76486 -19.05933 -18.59657 -17.74766 -17.51448
-16.90532 -16.79560 -16.56870 -16.31165 -15.95673 -15.68654 -15.52215 -15.01513
-14.75551 -14.45326 -14.43394 -14.30421 -13.98473 -13.67945 -13.45293 -13.03748
-12.86943 -12.70923 -12.64396 -12.02728 -11.95065 -11.78219 -11.58894 -11.52546
-11.50438 -11.42917 -10.79132 -10.70130 -10.57231 -10.30267 -9.51095 -8.88688
-7.89693 -5.27615 -0.69829 0.11791 0.59276 1.12992 1.44250 1.46502
1.54093 1.90769 1.92405 2.48057 2.67730 3.15707 3.29861 3.31833
3.47523 3.70979 3.73747 3.82319 3.91782 3.94279 4.13707 4.23442
4.29787 4.40401 4.50184 4.62322 4.66429 4.69143 4.83462 4.89519
4.96625 4.99137 5.07396 5.12374 5.22722 5.31413 5.45292 5.50979
5.64947 5.68355 5.77147 6.20881 6.30975 6.85175 6.87453 7.07509
7.74140 8.39883 9.21078
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.023552 B = 0.002679 C = 0.002512
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1188.593003 B =10447.331914 C =11145.368176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.945 5.945
2 C -0.059 4.059
3 Si 0.972 3.028
4 H -0.290 1.290
5 H -0.292 1.292
6 H -0.267 1.267
7 C -0.241 4.241
8 H 0.078 0.922
9 N -0.609 5.609
10 C 0.173 3.827
11 C -0.133 4.133
12 C -0.115 4.115
13 C 0.148 3.852
14 H 0.053 0.947
15 C 0.126 3.874
16 N -0.692 5.692
17 C 0.594 3.406
18 O -0.554 6.554
19 C -0.039 4.039
20 C -0.087 4.087
21 C -0.216 4.216
22 C 0.177 3.823
23 N -0.512 5.512
24 C 0.123 3.877
25 C -0.160 4.160
26 C 0.087 3.913
27 O -0.182 6.182
28 H 0.248 0.752
29 H -0.007 1.007
30 H 0.038 0.962
31 H 0.082 0.918
32 H 0.070 0.930
33 H 0.065 0.935
34 H 0.102 0.898
35 H 0.045 0.955
36 H 0.047 0.953
37 H 0.418 0.582
38 H 0.187 0.813
39 H 0.191 0.809
40 H 0.205 0.795
41 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.951 -23.861 -4.401 26.224
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.593 5.593
2 C -0.253 4.253
3 Si 0.800 3.200
4 H -0.217 1.217
5 H -0.219 1.219
6 H -0.192 1.192
7 C -0.370 4.370
8 H 0.096 0.904
9 N -0.334 5.334
10 C 0.048 3.952
11 C -0.172 4.172
12 C -0.153 4.153
13 C 0.040 3.960
14 H 0.070 0.930
15 C 0.000 4.000
16 N -0.343 5.343
17 C 0.380 3.620
18 O -0.434 6.434
19 C -0.089 4.089
20 C -0.109 4.109
21 C -0.219 4.219
22 C 0.014 3.986
23 N -0.223 5.223
24 C -0.027 4.027
25 C -0.180 4.180
26 C 0.032 3.968
27 O -0.082 6.082
28 H 0.057 0.943
29 H 0.011 0.989
30 H 0.056 0.944
31 H 0.101 0.899
32 H 0.089 0.911
33 H 0.084 0.916
34 H 0.120 0.880
35 H 0.063 0.937
36 H 0.066 0.934
37 H 0.255 0.745
38 H 0.204 0.796
39 H 0.208 0.792
40 H 0.222 0.778
41 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges 10.117 -23.642 -5.132 26.223
hybrid contribution -0.312 2.061 0.560 2.159
sum 9.805 -21.581 -4.572 24.141
Atomic orbital electron populations
1.70137 1.06295 1.25439 1.57420 1.25681 0.96512 1.01008 1.02091
0.85184 0.77946 0.79522 0.77341 1.21691 1.21878 1.19218 1.19308
0.90797 0.83511 1.43372 0.90401 1.44740 1.06562 1.01937 1.80144
1.21282 0.84012 0.93456 0.96448 1.22873 0.99562 0.95352 0.99369
1.22614 0.95235 0.97344 1.00059 1.21331 0.96058 0.86831 0.91741
0.92965 1.21899 0.95946 0.83042 0.99135 1.45805 1.58133 1.19285
1.11057 1.16883 0.78202 0.83608 0.83314 1.90895 1.58977 1.48243
1.45317 1.21785 1.07506 0.90097 0.89477 1.22954 0.96170 0.93369
0.98411 1.21086 1.07822 0.97102 0.95899 1.22883 0.89051 0.86089
1.00626 1.67913 1.20107 1.18978 1.15254 1.23273 0.91979 0.99848
0.87559 1.21457 1.03056 0.89116 1.04416 1.20388 0.94636 0.89562
0.92229 1.83937 1.64431 1.22060 1.37796 0.94274 0.98911 0.94387
0.89903 0.91095 0.91601 0.87966 0.93698 0.93424 0.74520 0.79573
0.79223 0.77838 0.80855
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -56.59 10.56 21.65 0.23 -56.36 16
2 C -0.06 -3.35 5.47 84.86 0.46 -2.88 16
3 Si 0.97 45.98 29.55 68.60 2.03 48.01 16
4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16
5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16
6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
7 C -0.24 -13.24 9.75 84.03 0.82 -12.42 16
8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16
9 N -0.61 -30.10 3.13 -668.25 -2.09 -32.19 16
10 C 0.17 8.30 5.42 86.86 0.47 8.77 16
11 C -0.13 -4.53 7.08 31.99 0.23 -4.30 16
12 C -0.11 -3.43 6.14 31.78 0.20 -3.24 16
13 C 0.15 5.54 3.21 45.34 0.15 5.69 16
14 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16
15 C 0.13 4.73 5.08 86.38 0.44 5.17 16
16 N -0.69 -20.22 5.34 -466.80 -2.49 -22.71 16
17 C 0.59 18.47 7.80 86.53 0.67 19.14 16
18 O -0.55 -21.44 16.82 -4.22 -0.07 -21.51 16
19 C -0.04 -0.98 7.07 24.01 0.17 -0.81 16
20 C -0.09 -1.87 10.80 23.76 0.26 -1.62 16
21 C -0.22 -4.10 6.43 -20.25 -0.13 -4.23 16
22 C 0.18 2.72 11.28 85.01 0.96 3.67 16
23 N -0.51 -8.04 10.34 -195.05 -2.02 -10.06 16
24 C 0.12 1.39 11.13 84.51 0.94 2.33 16
25 C -0.16 -2.05 10.13 22.40 0.23 -1.82 16
26 C 0.09 1.68 7.48 23.21 0.17 1.85 16
27 O -0.18 -4.04 10.26 -9.59 -0.10 -4.14 16
28 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16
29 H -0.01 -0.38 8.07 -2.39 -0.02 -0.40 16
30 H 0.04 2.06 6.90 -2.39 -0.02 2.05 16
31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16
32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
33 H 0.07 1.98 7.80 -2.39 -0.02 1.96 16
34 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16
35 H 0.04 1.94 7.90 -2.39 -0.02 1.92 16
36 H 0.05 2.02 8.06 -2.38 -0.02 2.00 16
37 H 0.42 9.61 8.07 -92.71 -0.75 8.86 16
38 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16
39 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16
40 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16
41 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16
Total: -1.00 -72.85 349.31 1.83 -71.02
By element:
Atomic # 1 Polarization: 12.33 SS G_CDS: 0.31 Total: 12.64 kcal
Atomic # 6 Polarization: 9.27 SS G_CDS: 6.03 Total: 15.31 kcal
Atomic # 7 Polarization: -114.96 SS G_CDS: -6.37 Total: -121.33 kcal
Atomic # 8 Polarization: -25.48 SS G_CDS: -0.17 Total: -25.65 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal
Total: -72.85 1.83 -71.02 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027998254.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.288 kcal
(2) G-P(sol) polarization free energy of solvation -72.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.434 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.267 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds