Wall clock time and date at job start Tue Mar 31 2020 10:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00063 * 2 1 4 4 H 1.48505 * 109.46844 * 269.99835 * 3 2 1 5 5 H 1.48505 * 109.47398 * 29.99331 * 3 2 1 6 6 H 1.48494 * 109.47416 * 149.99941 * 3 2 1 7 7 C 1.38810 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.65037 * 345.82482 * 9 7 2 11 11 C 1.54910 * 104.83296 * 204.15034 * 10 9 7 12 12 C 1.55157 * 101.58142 * 322.98418 * 11 10 9 13 13 C 1.47033 * 125.64789 * 165.84428 * 9 7 2 14 14 H 1.08996 * 110.00480 * 59.43185 * 13 9 7 15 15 C 1.52998 * 109.88265 * 298.33977 * 13 9 7 16 16 N 1.46498 * 109.46980 * 176.74466 * 15 13 9 17 17 C 1.34775 * 120.00202 * 174.96903 * 16 15 13 18 18 O 1.21659 * 119.99516 * 359.97438 * 17 16 15 19 19 C 1.46982 * 120.00176 * 179.97438 * 17 16 15 20 20 C 1.35847 * 125.11717 * 180.02562 * 19 17 16 21 21 C 1.46106 * 106.06713 * 179.97438 * 20 19 17 22 22 C 1.39441 * 135.07506 * 180.02562 * 21 20 19 23 23 N 1.31680 * 120.07355 * 179.97438 * 22 21 20 24 24 C 1.32305 * 122.14227 * 0.02671 * 23 22 21 25 25 C 1.37752 * 121.58379 * 0.02562 * 24 23 22 26 26 C 1.39238 * 118.95758 * 359.94025 * 25 24 23 27 27 O 1.34274 * 134.38146 * 180.02562 * 26 25 24 28 28 H 0.96998 * 119.99776 * 0.02562 * 1 2 3 29 29 H 1.08994 * 110.37114 * 85.30630 * 10 9 7 30 30 H 1.09003 * 110.45613 * 323.03061 * 10 9 7 31 31 H 1.08998 * 111.00360 * 204.91114 * 11 10 9 32 32 H 1.08997 * 111.00881 * 81.06052 * 11 10 9 33 33 H 1.08992 * 110.72155 * 277.14101 * 12 11 10 34 34 H 1.09004 * 110.72181 * 153.86437 * 12 11 10 35 35 H 1.08996 * 109.47416 * 56.73857 * 15 13 9 36 36 H 1.09009 * 109.46865 * 296.73892 * 15 13 9 37 37 H 0.97002 * 119.99730 * 354.96381 * 16 15 13 38 38 H 1.07993 * 126.97136 * 359.97062 * 20 19 17 39 39 H 1.07995 * 119.96609 * 359.97420 * 22 21 20 40 40 H 1.07997 * 119.20967 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.52518 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1101 -2.5513 0.2934 11 6 -0.2530 -4.0178 0.7715 12 6 0.7655 -4.7451 -0.1455 13 6 1.9004 -3.7095 -0.2911 14 1 2.6992 -3.9329 0.4160 15 6 2.4480 -3.7349 -1.7196 16 7 3.0873 -5.0281 -1.9745 17 6 3.5542 -5.3182 -3.2050 18 8 3.4443 -4.5062 -4.1043 19 6 4.1962 -6.6154 -3.4606 20 6 4.7023 -7.0148 -4.6564 21 6 5.2354 -8.3581 -4.4415 22 6 5.8742 -9.3061 -5.2399 23 7 6.2423 -10.4613 -4.7261 24 6 6.0269 -10.7680 -3.4573 25 6 5.4014 -9.8906 -2.5991 26 6 4.9893 -8.6520 -3.0838 27 8 4.3709 -7.5902 -2.5425 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7021 -2.3864 -0.6068 30 1 -0.4189 -1.8638 1.0809 31 1 -1.2644 -4.3872 0.6021 32 1 0.0263 -4.1158 1.8206 33 1 0.3206 -4.9686 -1.1150 34 1 1.1323 -5.6546 0.3306 35 1 3.1803 -2.9370 -1.8423 36 1 1.6298 -3.5889 -2.4249 37 1 3.1747 -5.6757 -1.2575 38 1 4.7091 -6.4534 -5.5789 39 1 6.0674 -9.0928 -6.2808 40 1 6.3483 -11.7297 -3.0856 41 1 5.2346 -10.1585 -1.5662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027998254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:25 Heat of formation + Delta-G solvation = 10.267058 kcal Electronic energy + Delta-G solvation = -25196.984645 eV Core-core repulsion = 21464.281273 eV Total energy + Delta-G solvation = -3732.703372 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.84547 -40.93107 -39.94871 -39.28530 -35.99614 -34.44942 -34.10812 -32.81106 -31.64368 -31.18142 -30.19136 -26.99227 -26.34109 -24.98397 -24.41876 -22.97657 -22.15352 -21.79880 -21.25548 -19.76486 -19.05933 -18.59657 -17.74766 -17.51448 -16.90532 -16.79560 -16.56870 -16.31165 -15.95673 -15.68654 -15.52215 -15.01513 -14.75551 -14.45326 -14.43394 -14.30421 -13.98473 -13.67945 -13.45293 -13.03748 -12.86943 -12.70923 -12.64396 -12.02728 -11.95065 -11.78219 -11.58894 -11.52546 -11.50438 -11.42917 -10.79132 -10.70130 -10.57231 -10.30267 -9.51095 -8.88688 -7.89693 -5.27615 -0.69829 0.11791 0.59276 1.12992 1.44250 1.46502 1.54093 1.90769 1.92405 2.48057 2.67730 3.15707 3.29861 3.31833 3.47523 3.70979 3.73747 3.82319 3.91782 3.94279 4.13707 4.23442 4.29787 4.40401 4.50184 4.62322 4.66429 4.69143 4.83462 4.89519 4.96625 4.99137 5.07396 5.12374 5.22722 5.31413 5.45292 5.50979 5.64947 5.68355 5.77147 6.20881 6.30975 6.85175 6.87453 7.07509 7.74140 8.39883 9.21078 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.002679 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.593003 B =10447.331914 C =11145.368176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.126 3.874 16 N -0.692 5.692 17 C 0.594 3.406 18 O -0.554 6.554 19 C -0.039 4.039 20 C -0.087 4.087 21 C -0.216 4.216 22 C 0.177 3.823 23 N -0.512 5.512 24 C 0.123 3.877 25 C -0.160 4.160 26 C 0.087 3.913 27 O -0.182 6.182 28 H 0.248 0.752 29 H -0.007 1.007 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.418 0.582 38 H 0.187 0.813 39 H 0.191 0.809 40 H 0.205 0.795 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.951 -23.861 -4.401 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.040 3.960 14 H 0.070 0.930 15 C 0.000 4.000 16 N -0.343 5.343 17 C 0.380 3.620 18 O -0.434 6.434 19 C -0.089 4.089 20 C -0.109 4.109 21 C -0.219 4.219 22 C 0.014 3.986 23 N -0.223 5.223 24 C -0.027 4.027 25 C -0.180 4.180 26 C 0.032 3.968 27 O -0.082 6.082 28 H 0.057 0.943 29 H 0.011 0.989 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.255 0.745 38 H 0.204 0.796 39 H 0.208 0.792 40 H 0.222 0.778 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.117 -23.642 -5.132 26.223 hybrid contribution -0.312 2.061 0.560 2.159 sum 9.805 -21.581 -4.572 24.141 Atomic orbital electron populations 1.70137 1.06295 1.25439 1.57420 1.25681 0.96512 1.01008 1.02091 0.85184 0.77946 0.79522 0.77341 1.21691 1.21878 1.19218 1.19308 0.90797 0.83511 1.43372 0.90401 1.44740 1.06562 1.01937 1.80144 1.21282 0.84012 0.93456 0.96448 1.22873 0.99562 0.95352 0.99369 1.22614 0.95235 0.97344 1.00059 1.21331 0.96058 0.86831 0.91741 0.92965 1.21899 0.95946 0.83042 0.99135 1.45805 1.58133 1.19285 1.11057 1.16883 0.78202 0.83608 0.83314 1.90895 1.58977 1.48243 1.45317 1.21785 1.07506 0.90097 0.89477 1.22954 0.96170 0.93369 0.98411 1.21086 1.07822 0.97102 0.95899 1.22883 0.89051 0.86089 1.00626 1.67913 1.20107 1.18978 1.15254 1.23273 0.91979 0.99848 0.87559 1.21457 1.03056 0.89116 1.04416 1.20388 0.94636 0.89562 0.92229 1.83937 1.64431 1.22060 1.37796 0.94274 0.98911 0.94387 0.89903 0.91095 0.91601 0.87966 0.93698 0.93424 0.74520 0.79573 0.79223 0.77838 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.59 10.56 21.65 0.23 -56.36 16 2 C -0.06 -3.35 5.47 84.86 0.46 -2.88 16 3 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.24 9.75 84.03 0.82 -12.42 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -30.10 3.13 -668.25 -2.09 -32.19 16 10 C 0.17 8.30 5.42 86.86 0.47 8.77 16 11 C -0.13 -4.53 7.08 31.99 0.23 -4.30 16 12 C -0.11 -3.43 6.14 31.78 0.20 -3.24 16 13 C 0.15 5.54 3.21 45.34 0.15 5.69 16 14 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 15 C 0.13 4.73 5.08 86.38 0.44 5.17 16 16 N -0.69 -20.22 5.34 -466.80 -2.49 -22.71 16 17 C 0.59 18.47 7.80 86.53 0.67 19.14 16 18 O -0.55 -21.44 16.82 -4.22 -0.07 -21.51 16 19 C -0.04 -0.98 7.07 24.01 0.17 -0.81 16 20 C -0.09 -1.87 10.80 23.76 0.26 -1.62 16 21 C -0.22 -4.10 6.43 -20.25 -0.13 -4.23 16 22 C 0.18 2.72 11.28 85.01 0.96 3.67 16 23 N -0.51 -8.04 10.34 -195.05 -2.02 -10.06 16 24 C 0.12 1.39 11.13 84.51 0.94 2.33 16 25 C -0.16 -2.05 10.13 22.40 0.23 -1.82 16 26 C 0.09 1.68 7.48 23.21 0.17 1.85 16 27 O -0.18 -4.04 10.26 -9.59 -0.10 -4.14 16 28 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 29 H -0.01 -0.38 8.07 -2.39 -0.02 -0.40 16 30 H 0.04 2.06 6.90 -2.39 -0.02 2.05 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 1.98 7.80 -2.39 -0.02 1.96 16 34 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.04 1.94 7.90 -2.39 -0.02 1.92 16 36 H 0.05 2.02 8.06 -2.38 -0.02 2.00 16 37 H 0.42 9.61 8.07 -92.71 -0.75 8.86 16 38 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -72.85 349.31 1.83 -71.02 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.31 Total: 12.64 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.03 Total: 15.31 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.37 Total: -121.33 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.17 Total: -25.65 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -72.85 1.83 -71.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.288 kcal (2) G-P(sol) polarization free energy of solvation -72.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds