Wall clock time and date at job start Tue Mar 31 2020 10:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47066 * 240.00163 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47129 * 119.99774 * 3 2 1 7 7 C 1.38813 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64866 * 14.74216 * 9 7 2 11 11 C 1.54910 * 104.83065 * 155.88833 * 10 9 7 12 12 C 1.55152 * 101.58490 * 37.00634 * 11 10 9 13 13 C 1.47028 * 125.64831 * 194.75643 * 9 7 2 14 14 H 1.08996 * 110.01457 * 300.53889 * 13 9 7 15 15 C 1.53003 * 109.87604 * 61.62779 * 13 9 7 16 16 N 1.46507 * 109.46898 * 182.39883 * 15 13 9 17 17 C 1.34772 * 120.00010 * 185.13817 * 16 15 13 18 18 O 1.21568 * 119.99924 * 359.97438 * 17 16 15 19 19 C 1.47785 * 119.99936 * 179.97438 * 17 16 15 20 20 N 1.32817 * 120.07391 * 359.97362 * 19 17 16 21 21 C 1.31674 * 122.01408 * 180.02562 * 20 19 17 22 22 C 1.38396 * 121.69567 * 359.97438 * 21 20 19 23 23 C 1.38857 * 119.14042 * 0.04290 * 22 21 20 24 24 O 1.34423 * 134.64009 * 179.97438 * 23 22 21 25 25 C 1.34446 * 110.85417 * 179.97438 * 24 23 22 26 26 C 1.34308 * 110.16591 * 0.02562 * 25 24 23 27 27 C 1.40198 * 120.07299 * 179.97438 * 19 17 16 28 28 H 0.96999 * 119.99921 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36789 * 37.05317 * 10 9 7 30 30 H 1.08997 * 110.45736 * 274.77097 * 10 9 7 31 31 H 1.09000 * 111.00724 * 278.93184 * 11 10 9 32 32 H 1.09000 * 111.00652 * 155.08580 * 11 10 9 33 33 H 1.09004 * 110.72446 * 206.13231 * 12 11 10 34 34 H 1.09008 * 110.72046 * 82.86275 * 12 11 10 35 35 H 1.08998 * 109.47525 * 62.39891 * 15 13 9 36 36 H 1.08999 * 109.47373 * 302.39474 * 15 13 9 37 37 H 0.96994 * 119.99943 * 5.12819 * 16 15 13 38 38 H 1.07995 * 119.15095 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.43033 * 179.97438 * 22 21 20 40 40 H 1.08003 * 124.91927 * 179.73917 * 25 24 23 41 41 H 1.08009 * 126.89535 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1076 -2.5527 -0.3049 11 6 -0.2466 -4.0219 -0.7760 12 6 0.7640 -4.7442 0.1536 13 6 1.8976 -3.7079 0.3033 14 1 2.7025 -3.9354 -0.3956 15 6 2.4329 -3.7255 1.7365 16 7 3.0518 -5.0247 2.0108 17 6 3.5023 -5.3087 3.2488 18 8 3.3956 -4.4865 4.1379 19 6 4.1261 -6.6195 3.5256 20 7 4.2430 -7.5191 2.5554 21 6 4.7917 -8.6985 2.7595 22 6 5.2797 -9.0685 4.0006 23 6 5.1874 -8.1731 5.0578 24 8 5.5459 -8.2008 6.3531 25 6 5.2258 -7.0462 6.9631 26 6 4.6411 -6.2085 6.0912 27 6 4.5958 -6.9163 4.8128 28 1 -0.4850 0.8400 0.0004 29 1 -0.4076 -1.8695 -1.0995 30 1 -0.7087 -2.3823 0.5882 31 1 0.0417 -4.1257 -1.8221 32 1 -1.2595 -4.3902 -0.6133 33 1 1.1345 -5.6563 -0.3142 34 1 0.3106 -4.9622 1.1207 35 1 1.6112 -3.5601 2.4333 36 1 3.1755 -2.9367 1.8567 37 1 3.1372 -5.6807 1.3013 38 1 4.8627 -9.3951 1.9373 39 1 5.7255 -10.0416 4.1452 40 1 5.4081 -6.8260 8.0046 41 1 4.2775 -5.2118 6.2937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028039932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:29 Heat of formation + Delta-G solvation = 34.843269 kcal Electronic energy + Delta-G solvation = -25530.870640 eV Core-core repulsion = 21799.232973 eV Total energy + Delta-G solvation = -3731.637667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.94963 -39.94527 -38.63055 -37.52595 -34.32496 -33.14283 -32.50147 -32.05533 -30.23799 -29.55379 -28.56033 -25.53907 -24.65520 -23.72522 -23.26192 -22.12505 -20.56356 -20.08963 -19.53187 -18.18950 -18.06725 -17.07740 -16.60927 -16.52897 -15.85295 -15.53767 -15.11799 -14.87839 -14.47220 -14.42383 -13.93322 -13.75530 -13.58470 -13.26941 -13.10790 -12.85492 -12.11089 -12.05660 -11.85349 -11.71879 -11.28764 -10.93121 -10.76068 -10.59432 -10.36247 -10.21654 -10.10647 -9.95848 -9.80700 -9.74953 -9.72531 -9.62800 -8.76797 -8.58722 -8.50133 -6.82286 -5.75221 -3.11837 0.09927 0.88426 2.02831 2.30762 2.74398 3.23473 3.42314 3.46613 3.47631 3.71628 3.93971 4.19361 4.26178 4.50277 4.64321 4.74663 4.91246 5.10891 5.35679 5.40498 5.44332 5.45568 5.53889 5.61826 5.65554 5.84858 5.97150 6.07979 6.10568 6.17046 6.29466 6.49071 6.56286 6.63320 6.64826 6.72372 6.83017 7.08124 7.40933 7.53494 7.63018 7.80712 7.83824 8.27021 8.41147 9.19055 9.79558 10.47289 11.36762 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.003071 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.527738 B = 9114.288880 C =10047.986100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.107 3.893 16 N -0.697 5.697 17 C 0.561 3.439 18 O -0.530 6.530 19 C 0.146 3.854 20 N -0.463 5.463 21 C 0.111 3.889 22 C -0.141 4.141 23 C 0.079 3.921 24 O -0.190 6.190 25 C -0.001 4.001 26 C -0.172 4.172 27 C -0.136 4.136 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.407 0.593 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.216 0.784 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.761 -19.827 8.370 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.018 4.018 16 N -0.348 5.348 17 C 0.344 3.656 18 O -0.406 6.406 19 C 0.002 3.998 20 N -0.176 5.176 21 C -0.043 4.043 22 C -0.162 4.162 23 C 0.025 3.975 24 O -0.089 6.089 25 C -0.065 4.065 26 C -0.192 4.192 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.242 0.758 38 H 0.192 0.808 39 H 0.166 0.834 40 H 0.232 0.768 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.409 -18.966 8.260 22.331 hybrid contribution 0.805 0.455 0.689 1.153 sum 9.213 -18.511 8.950 22.531 Atomic orbital electron populations 1.69931 1.05020 1.25417 1.55788 1.24916 0.95672 0.97851 1.01368 0.86227 0.78593 0.83081 0.78031 1.21061 1.21571 1.20960 1.18947 0.90386 0.82198 1.44780 0.90687 1.44478 1.06427 1.00993 1.79353 1.21448 0.84760 0.90183 0.98828 1.23006 0.97556 0.99581 0.98571 1.22606 0.97049 0.97044 0.99727 1.21131 0.94638 0.88092 0.91791 0.94329 1.22350 0.97602 0.82336 0.99513 1.46011 1.58937 1.19223 1.10623 1.17691 0.79221 0.85047 0.83617 1.90781 1.56826 1.47885 1.45150 1.20926 0.96406 0.94547 0.87919 1.67690 1.14472 1.02438 1.33031 1.22607 0.93563 0.92973 0.95202 1.21177 1.04398 1.00217 0.90397 1.19723 0.97893 0.95573 0.84350 1.83965 1.68060 1.37404 1.19520 1.24280 1.00119 0.83011 0.99063 1.22774 1.04053 1.02296 0.90048 1.20665 1.02534 0.95170 0.95634 0.93558 0.91003 0.95601 0.92283 0.92362 0.92218 0.91872 0.91304 0.91233 0.75799 0.80777 0.83449 0.76775 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.58 55.49 0.59 -26.13 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.46 9.76 -15.06 -0.15 -6.61 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.71 3.13 -162.57 -0.51 -15.21 16 10 C 0.17 4.14 5.41 -2.53 -0.01 4.13 16 11 C -0.15 -2.76 7.08 -24.58 -0.17 -2.93 16 12 C -0.13 -2.17 6.10 -24.90 -0.15 -2.32 16 13 C 0.15 3.06 3.22 -66.95 -0.22 2.84 16 14 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 15 C 0.11 2.12 5.07 -4.04 -0.02 2.10 16 16 N -0.70 -11.52 5.32 -61.26 -0.33 -11.85 16 17 C 0.56 9.67 7.80 -12.36 -0.10 9.57 16 18 O -0.53 -10.59 15.20 5.31 0.08 -10.51 16 19 C 0.15 2.12 6.78 -82.80 -0.56 1.56 16 20 N -0.46 -5.74 9.55 -9.68 -0.09 -5.83 16 21 C 0.11 0.99 11.13 -17.56 -0.20 0.79 16 22 C -0.14 -1.22 10.13 -39.29 -0.40 -1.61 16 23 C 0.08 0.90 7.48 -38.29 -0.29 0.61 16 24 O -0.19 -1.96 10.57 4.99 0.05 -1.90 16 25 C 0.00 -0.01 11.97 29.35 0.35 0.35 16 26 C -0.17 -2.05 10.31 -37.77 -0.39 -2.44 16 27 C -0.14 -1.84 6.16 -104.90 -0.65 -2.49 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 30 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.08 7.81 -51.92 -0.41 0.68 16 35 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 36 H 0.07 1.53 7.92 -51.93 -0.41 1.12 16 37 H 0.41 5.87 7.68 -40.82 -0.31 5.55 16 38 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.22 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.17 2.16 7.29 -52.48 -0.38 1.78 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -33.19 345.75 -8.28 -41.46 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.22 Total: 4.20 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.04 Total: 3.43 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.34 Total: -59.02 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.13 Total: -12.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.19 -8.28 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028039932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.306 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds