Wall clock time and date at job start Tue Mar 31 2020 10:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47066 * 240.00163 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47129 * 119.99774 * 3 2 1 7 7 C 1.38813 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64866 * 14.74216 * 9 7 2 11 11 C 1.54910 * 104.83065 * 155.88833 * 10 9 7 12 12 C 1.55152 * 101.58490 * 37.00634 * 11 10 9 13 13 C 1.47028 * 125.64831 * 194.75643 * 9 7 2 14 14 H 1.08996 * 110.01457 * 300.53889 * 13 9 7 15 15 C 1.53003 * 109.87604 * 61.62779 * 13 9 7 16 16 N 1.46507 * 109.46898 * 182.39883 * 15 13 9 17 17 C 1.34772 * 120.00010 * 185.13817 * 16 15 13 18 18 O 1.21568 * 119.99924 * 359.97438 * 17 16 15 19 19 C 1.47785 * 119.99936 * 179.97438 * 17 16 15 20 20 N 1.32817 * 120.07391 * 359.97362 * 19 17 16 21 21 C 1.31674 * 122.01408 * 180.02562 * 20 19 17 22 22 C 1.38396 * 121.69567 * 359.97438 * 21 20 19 23 23 C 1.38857 * 119.14042 * 0.04290 * 22 21 20 24 24 O 1.34423 * 134.64009 * 179.97438 * 23 22 21 25 25 C 1.34446 * 110.85417 * 179.97438 * 24 23 22 26 26 C 1.34308 * 110.16591 * 0.02562 * 25 24 23 27 27 C 1.40198 * 120.07299 * 179.97438 * 19 17 16 28 28 H 0.96999 * 119.99921 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36789 * 37.05317 * 10 9 7 30 30 H 1.08997 * 110.45736 * 274.77097 * 10 9 7 31 31 H 1.09000 * 111.00724 * 278.93184 * 11 10 9 32 32 H 1.09000 * 111.00652 * 155.08580 * 11 10 9 33 33 H 1.09004 * 110.72446 * 206.13231 * 12 11 10 34 34 H 1.09008 * 110.72046 * 82.86275 * 12 11 10 35 35 H 1.08998 * 109.47525 * 62.39891 * 15 13 9 36 36 H 1.08999 * 109.47373 * 302.39474 * 15 13 9 37 37 H 0.96994 * 119.99943 * 5.12819 * 16 15 13 38 38 H 1.07995 * 119.15095 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.43033 * 179.97438 * 22 21 20 40 40 H 1.08003 * 124.91927 * 179.73917 * 25 24 23 41 41 H 1.08009 * 126.89535 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1076 -2.5527 -0.3049 11 6 -0.2466 -4.0219 -0.7760 12 6 0.7640 -4.7442 0.1536 13 6 1.8976 -3.7079 0.3033 14 1 2.7025 -3.9354 -0.3956 15 6 2.4329 -3.7255 1.7365 16 7 3.0518 -5.0247 2.0108 17 6 3.5023 -5.3087 3.2488 18 8 3.3956 -4.4865 4.1379 19 6 4.1261 -6.6195 3.5256 20 7 4.2430 -7.5191 2.5554 21 6 4.7917 -8.6985 2.7595 22 6 5.2797 -9.0685 4.0006 23 6 5.1874 -8.1731 5.0578 24 8 5.5459 -8.2008 6.3531 25 6 5.2258 -7.0462 6.9631 26 6 4.6411 -6.2085 6.0912 27 6 4.5958 -6.9163 4.8128 28 1 -0.4850 0.8400 0.0004 29 1 -0.4076 -1.8695 -1.0995 30 1 -0.7087 -2.3823 0.5882 31 1 0.0417 -4.1257 -1.8221 32 1 -1.2595 -4.3902 -0.6133 33 1 1.1345 -5.6563 -0.3142 34 1 0.3106 -4.9622 1.1207 35 1 1.6112 -3.5601 2.4333 36 1 3.1755 -2.9367 1.8567 37 1 3.1372 -5.6807 1.3013 38 1 4.8627 -9.3951 1.9373 39 1 5.7255 -10.0416 4.1452 40 1 5.4081 -6.8260 8.0046 41 1 4.2775 -5.2118 6.2937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028039932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:28 Heat of formation + Delta-G solvation = 11.593826 kcal Electronic energy + Delta-G solvation = -25531.878812 eV Core-core repulsion = 21799.232973 eV Total energy + Delta-G solvation = -3732.645839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.74979 -41.12172 -39.78212 -39.12755 -35.86405 -34.42975 -33.98782 -32.96718 -31.49400 -31.05708 -30.12798 -26.93083 -26.33799 -25.14391 -24.05539 -23.14296 -22.07158 -21.55929 -21.15976 -19.31307 -18.97997 -18.54190 -17.86596 -17.43242 -17.34144 -16.67778 -16.46567 -16.29773 -15.98795 -15.69590 -15.36245 -14.94681 -14.89590 -14.34639 -14.20942 -13.95779 -13.91794 -13.65947 -13.41820 -12.99650 -12.93841 -12.86966 -12.65747 -12.06172 -11.88993 -11.74822 -11.50389 -11.44392 -11.43500 -11.41436 -10.85152 -10.67892 -10.56796 -10.17377 -9.41630 -8.87167 -7.88979 -5.26951 -0.78455 0.07561 1.21104 1.43868 1.47486 1.53129 1.57531 1.63134 1.96071 2.48763 2.72753 3.04313 3.28685 3.31576 3.47995 3.72520 3.84178 3.93929 3.96836 4.01877 4.22245 4.27436 4.31802 4.43382 4.52292 4.58733 4.70636 4.74444 4.85114 4.94324 4.98368 5.12813 5.17363 5.19510 5.31006 5.34576 5.45718 5.53759 5.65784 5.77393 5.85260 6.21998 6.36515 6.72183 7.07890 7.10528 7.74941 8.41382 9.21849 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.003071 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.527738 B = 9114.288880 C =10047.986100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.149 3.851 14 H 0.052 0.948 15 C 0.128 3.872 16 N -0.687 5.687 17 C 0.558 3.442 18 O -0.570 6.570 19 C 0.107 3.893 20 N -0.468 5.468 21 C 0.107 3.893 22 C -0.113 4.113 23 C 0.063 3.937 24 O -0.187 6.187 25 C 0.041 3.959 26 C -0.223 4.223 27 C -0.156 4.156 28 H 0.248 0.752 29 H 0.037 0.963 30 H -0.008 1.008 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.420 0.580 38 H 0.220 0.780 39 H 0.192 0.808 40 H 0.263 0.737 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -23.765 8.375 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.801 3.199 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.338 5.338 17 C 0.344 3.656 18 O -0.449 6.449 19 C -0.034 4.034 20 N -0.182 5.182 21 C -0.048 4.048 22 C -0.132 4.132 23 C 0.008 3.992 24 O -0.087 6.087 25 C -0.023 4.023 26 C -0.243 4.243 27 C -0.160 4.160 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.010 0.990 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.257 0.743 38 H 0.237 0.763 39 H 0.209 0.791 40 H 0.279 0.721 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.308 -22.951 8.243 26.476 hybrid contribution 0.320 1.517 0.772 1.732 sum 10.628 -21.434 9.014 25.566 Atomic orbital electron populations 1.70136 1.06289 1.25525 1.57316 1.25697 0.96529 1.01010 1.01975 0.85244 0.77338 0.79126 0.78193 1.19869 1.21813 1.20875 1.19274 0.90755 0.83610 1.43621 0.90612 1.44739 1.06900 1.02045 1.79727 1.21268 0.84011 0.93447 0.96354 1.22874 0.99559 0.95280 0.99348 1.22585 0.95255 0.97399 0.99844 1.21314 0.96103 0.86884 0.91546 0.93078 1.21801 0.95839 0.83304 0.98847 1.45719 1.58821 1.18081 1.11185 1.18216 0.78401 0.86083 0.82913 1.90746 1.58342 1.49613 1.46234 1.20366 0.99755 0.94042 0.89274 1.67611 1.14646 1.03359 1.32566 1.23409 0.92389 0.92195 0.96803 1.21757 1.01486 1.00984 0.89021 1.20099 0.98502 0.95297 0.85273 1.84001 1.67858 1.37669 1.19166 1.25064 0.96042 0.81219 1.00016 1.22777 1.07686 1.02828 0.91045 1.20955 1.02665 0.96742 0.95664 0.94248 0.94412 0.99008 0.90943 0.89851 0.87902 0.91941 0.94112 0.94372 0.74256 0.76341 0.79122 0.72115 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.73 10.58 21.65 0.23 -57.50 16 2 C -0.06 -3.38 5.47 84.86 0.46 -2.92 16 3 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 7 C -0.24 -13.86 9.76 84.03 0.82 -13.04 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -31.43 3.13 -668.26 -2.09 -33.52 16 10 C 0.17 8.65 5.41 86.86 0.47 9.12 16 11 C -0.13 -4.71 7.08 31.98 0.23 -4.49 16 12 C -0.11 -3.67 6.10 31.78 0.19 -3.47 16 13 C 0.15 6.01 3.22 45.34 0.15 6.15 16 14 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 15 C 0.13 5.31 5.07 86.38 0.44 5.75 16 16 N -0.69 -23.15 5.32 -466.01 -2.48 -25.63 16 17 C 0.56 20.14 7.80 86.77 0.68 20.82 16 18 O -0.57 -24.57 15.20 -3.93 -0.06 -24.63 16 19 C 0.11 3.14 6.78 42.00 0.28 3.43 16 20 N -0.47 -10.71 9.55 -184.55 -1.76 -12.48 16 21 C 0.11 1.49 11.13 84.75 0.94 2.43 16 22 C -0.11 -1.45 10.13 22.46 0.23 -1.22 16 23 C 0.06 1.26 7.48 23.11 0.17 1.44 16 24 O -0.19 -3.31 10.57 -5.05 -0.05 -3.36 16 25 C 0.04 0.63 11.97 66.92 0.80 1.43 16 26 C -0.22 -5.46 10.31 23.44 0.24 -5.21 16 27 C -0.16 -4.20 6.16 -20.04 -0.12 -4.33 16 28 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.04 2.10 6.94 -2.39 -0.02 2.08 16 30 H -0.01 -0.45 8.06 -2.39 -0.02 -0.47 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.10 2.52 8.14 -2.38 -0.02 2.51 16 34 H 0.06 2.06 7.81 -2.38 -0.02 2.04 16 35 H 0.04 1.90 8.08 -2.39 -0.02 1.88 16 36 H 0.04 1.79 7.92 -2.39 -0.02 1.78 16 37 H 0.42 11.73 7.68 -92.71 -0.71 11.02 16 38 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.26 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.16 4.28 7.29 -2.91 -0.02 4.26 16 Total: -1.00 -79.35 345.75 2.15 -77.20 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.35 Total: 15.02 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 5.98 Total: 15.88 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -6.10 Total: -129.12 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.11 Total: -27.99 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -79.35 2.15 -77.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028039932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.793 kcal (2) G-P(sol) polarization free energy of solvation -79.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds