Wall clock time and date at job start Tue Mar 31 2020 10:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48496 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 299.99296 * 3 2 1 6 6 H 1.48501 * 109.47346 * 59.99649 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64458 * 346.25935 * 9 7 2 11 11 C 1.54911 * 104.92763 * 204.09920 * 10 9 7 12 12 C 1.55280 * 101.52761 * 323.12951 * 11 10 9 13 13 C 1.47019 * 125.65189 * 166.29081 * 9 7 2 14 14 H 1.09003 * 109.88217 * 59.49720 * 13 9 7 15 15 C 1.52998 * 109.88241 * 298.33224 * 13 9 7 16 16 N 1.46500 * 109.47479 * 175.50089 * 15 13 9 17 17 C 1.34771 * 120.00266 * 184.66200 * 16 15 13 18 18 O 1.21564 * 119.99825 * 0.02562 * 17 16 15 19 19 C 1.47790 * 120.00110 * 179.97438 * 17 16 15 20 20 N 1.32818 * 120.07122 * 359.72425 * 19 17 16 21 21 C 1.31676 * 122.00672 * 179.71347 * 20 19 17 22 22 C 1.38387 * 121.70092 * 0.58803 * 21 20 19 23 23 C 1.38860 * 119.13734 * 359.70865 * 22 21 20 24 24 O 1.34422 * 134.63896 * 180.02562 * 23 22 21 25 25 C 1.34450 * 110.85610 * 179.97438 * 24 23 22 26 26 C 1.34313 * 110.16367 * 359.97438 * 25 24 23 27 27 C 1.40196 * 120.06961 * 180.02562 * 19 17 16 28 28 H 0.96998 * 119.99971 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.36942 * 322.98869 * 10 9 7 30 30 H 1.09003 * 110.36740 * 85.20576 * 10 9 7 31 31 H 1.08997 * 111.00694 * 81.11774 * 11 10 9 32 32 H 1.09007 * 111.00463 * 204.97240 * 11 10 9 33 33 H 1.08999 * 110.62008 * 277.00763 * 12 11 10 34 34 H 1.09002 * 110.75484 * 153.77928 * 12 11 10 35 35 H 1.09002 * 109.47426 * 295.50340 * 15 13 9 36 36 H 1.09000 * 109.46823 * 55.50023 * 15 13 9 37 37 H 0.97002 * 119.99808 * 4.65603 * 16 15 13 38 38 H 1.07994 * 119.14667 * 180.27721 * 21 20 19 39 39 H 1.07999 * 120.43077 * 179.67760 * 22 21 20 40 40 H 1.07995 * 124.91895 * 179.97438 * 25 24 23 41 41 H 1.07996 * 126.89031 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1119 -2.5502 0.2846 11 6 -0.2607 -4.0149 0.7664 12 6 0.7668 -4.7457 -0.1399 13 6 1.9024 -3.7105 -0.2821 14 1 2.6954 -3.9296 0.4331 15 6 2.4594 -3.7416 -1.7067 16 7 3.1265 -5.0245 -1.9425 17 6 3.7769 -5.2427 -3.1025 18 8 3.8105 -4.3748 -3.9530 19 6 4.4503 -6.5366 -3.3401 20 7 4.4199 -7.4834 -2.4091 21 6 5.0019 -8.6518 -2.5827 22 6 5.6905 -8.9558 -3.7440 23 6 5.7643 -8.0063 -4.7545 24 8 6.3307 -7.9658 -5.9729 25 6 6.1031 -6.7816 -6.5674 26 6 5.3745 -5.9915 -5.7619 27 6 5.1277 -6.7650 -4.5460 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4240 -1.8596 1.0680 30 1 -0.6981 -2.3869 -0.6198 31 1 0.0102 -4.1098 1.8179 32 1 -1.2714 -4.3834 0.5902 33 1 0.3282 -4.9729 -1.1115 34 1 1.1302 -5.6532 0.3421 35 1 1.6431 -3.6203 -2.4188 36 1 3.1763 -2.9305 -1.8343 37 1 3.1000 -5.7168 -1.2636 38 1 4.9446 -9.3900 -1.7965 39 1 6.1647 -9.9189 -3.8625 40 1 6.4552 -6.5055 -7.5504 41 1 5.0387 -4.9865 -5.9703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028039933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:31 Heat of formation + Delta-G solvation = 34.846210 kcal Electronic energy + Delta-G solvation = -25519.253838 eV Core-core repulsion = 21787.616298 eV Total energy + Delta-G solvation = -3731.637540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.95024 -39.94651 -38.63099 -37.53048 -34.32842 -33.14426 -32.50338 -32.05620 -30.23937 -29.55498 -28.56430 -25.54127 -24.65868 -23.72960 -23.26316 -22.12733 -20.58120 -20.07881 -19.52648 -18.19425 -18.07173 -17.07475 -16.61456 -16.55575 -15.86544 -15.54026 -15.10378 -14.88013 -14.47764 -14.42475 -13.91445 -13.77896 -13.55031 -13.27452 -13.10912 -12.83947 -12.11268 -12.06536 -11.85816 -11.74894 -11.32848 -10.92896 -10.79610 -10.59476 -10.36687 -10.18073 -10.07434 -9.92871 -9.81665 -9.75041 -9.71392 -9.62636 -8.78452 -8.60344 -8.50375 -6.82966 -5.75098 -3.11554 0.09822 0.88305 2.02752 2.30684 2.74216 3.23225 3.41091 3.47454 3.49402 3.71454 3.93860 4.19223 4.26069 4.50149 4.64242 4.74590 4.91150 5.10784 5.35475 5.40435 5.43398 5.45495 5.53181 5.61608 5.65326 5.84521 5.97020 6.06191 6.10268 6.16888 6.28570 6.48978 6.55821 6.63173 6.64590 6.72111 6.82267 7.07682 7.40727 7.54466 7.62560 7.81380 7.83559 8.26879 8.40833 9.19124 9.79564 10.46691 11.36653 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.003107 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.999770 B = 9011.030763 C =10077.102626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.040 0.960 15 C 0.107 3.893 16 N -0.698 5.698 17 C 0.561 3.439 18 O -0.530 6.530 19 C 0.146 3.854 20 N -0.463 5.463 21 C 0.111 3.889 22 C -0.141 4.141 23 C 0.079 3.921 24 O -0.190 6.190 25 C -0.001 4.001 26 C -0.172 4.172 27 C -0.136 4.136 28 H 0.253 0.747 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.407 0.593 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.216 0.784 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.652 -19.660 -7.872 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.018 4.018 16 N -0.348 5.348 17 C 0.344 3.656 18 O -0.406 6.406 19 C 0.002 3.998 20 N -0.176 5.176 21 C -0.043 4.043 22 C -0.162 4.162 23 C 0.025 3.975 24 O -0.089 6.089 25 C -0.065 4.065 26 C -0.192 4.192 27 C -0.140 4.140 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.242 0.758 38 H 0.192 0.808 39 H 0.166 0.834 40 H 0.232 0.768 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.306 -18.810 -7.776 22.381 hybrid contribution 0.866 0.485 -0.649 1.185 sum 10.172 -18.325 -8.425 22.589 Atomic orbital electron populations 1.69952 1.04998 1.25146 1.56110 1.24901 0.95685 0.97846 1.01500 0.86068 0.78944 0.83678 0.77234 1.20370 1.21614 1.21729 1.19048 0.90462 0.82177 1.44356 0.90554 1.44503 1.05863 1.00787 1.80170 1.21472 0.84637 0.90336 0.98893 1.23026 0.97444 0.99538 0.98679 1.22647 0.97003 0.97068 0.99836 1.21131 0.94533 0.88021 0.91980 0.94281 1.22348 0.96757 0.83116 0.99593 1.46013 1.52459 1.18811 1.17540 1.17695 0.79472 0.85302 0.83104 1.90780 1.60917 1.44297 1.44618 1.20926 0.95671 0.94353 0.88857 1.67693 1.18364 1.01357 1.30220 1.22605 0.92699 0.93612 0.95434 1.21176 1.03542 0.99578 0.91883 1.19724 0.95845 0.95739 0.86229 1.83964 1.63402 1.36057 1.25524 1.24281 1.00451 0.82475 0.99258 1.22773 1.02351 1.02226 0.91819 1.20664 1.01490 0.95154 0.96691 0.93682 0.90783 0.95687 0.92289 0.92322 0.91841 0.92183 0.91692 0.90821 0.75795 0.80776 0.83444 0.76774 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.54 55.49 0.58 -26.12 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.39 9.73 -15.06 -0.15 -6.54 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.59 -14.72 3.13 -162.57 -0.51 -15.22 16 10 C 0.17 4.10 5.42 -2.53 -0.01 4.09 16 11 C -0.15 -2.74 7.10 -24.51 -0.17 -2.91 16 12 C -0.13 -2.17 6.07 -24.83 -0.15 -2.32 16 13 C 0.15 3.05 3.22 -66.96 -0.22 2.84 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 15 C 0.11 2.11 5.09 -4.04 -0.02 2.09 16 16 N -0.70 -11.53 5.39 -61.27 -0.33 -11.86 16 17 C 0.56 9.68 7.80 -12.36 -0.10 9.58 16 18 O -0.53 -10.59 15.20 5.31 0.08 -10.51 16 19 C 0.15 2.13 6.78 -82.80 -0.56 1.56 16 20 N -0.46 -5.74 9.55 -9.68 -0.09 -5.83 16 21 C 0.11 0.99 11.13 -17.56 -0.20 0.79 16 22 C -0.14 -1.22 10.13 -39.30 -0.40 -1.61 16 23 C 0.08 0.90 7.48 -38.28 -0.29 0.61 16 24 O -0.19 -1.96 10.57 4.99 0.05 -1.90 16 25 C 0.00 -0.01 11.97 29.35 0.35 0.35 16 26 C -0.17 -2.05 10.31 -37.77 -0.39 -2.44 16 27 C -0.14 -1.84 6.16 -104.90 -0.65 -2.49 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.07 1.97 6.86 -51.93 -0.36 1.61 16 30 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 36 H 0.07 1.65 7.86 -51.93 -0.41 1.24 16 37 H 0.41 5.86 7.59 -40.82 -0.31 5.55 16 38 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.22 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.17 2.16 7.29 -52.49 -0.38 1.78 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -33.24 345.51 -8.27 -41.51 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.20 Total: 4.10 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.04 Total: 3.43 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.35 Total: -59.03 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.13 Total: -12.41 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.24 -8.27 -41.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028039933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.356 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds