Wall clock time and date at job start Tue Mar 31 2020 10:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48496 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 299.99296 * 3 2 1 6 6 H 1.48501 * 109.47346 * 59.99649 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64458 * 346.25935 * 9 7 2 11 11 C 1.54911 * 104.92763 * 204.09920 * 10 9 7 12 12 C 1.55280 * 101.52761 * 323.12951 * 11 10 9 13 13 C 1.47019 * 125.65189 * 166.29081 * 9 7 2 14 14 H 1.09003 * 109.88217 * 59.49720 * 13 9 7 15 15 C 1.52998 * 109.88241 * 298.33224 * 13 9 7 16 16 N 1.46500 * 109.47479 * 175.50089 * 15 13 9 17 17 C 1.34771 * 120.00266 * 184.66200 * 16 15 13 18 18 O 1.21564 * 119.99825 * 0.02562 * 17 16 15 19 19 C 1.47790 * 120.00110 * 179.97438 * 17 16 15 20 20 N 1.32818 * 120.07122 * 359.72425 * 19 17 16 21 21 C 1.31676 * 122.00672 * 179.71347 * 20 19 17 22 22 C 1.38387 * 121.70092 * 0.58803 * 21 20 19 23 23 C 1.38860 * 119.13734 * 359.70865 * 22 21 20 24 24 O 1.34422 * 134.63896 * 180.02562 * 23 22 21 25 25 C 1.34450 * 110.85610 * 179.97438 * 24 23 22 26 26 C 1.34313 * 110.16367 * 359.97438 * 25 24 23 27 27 C 1.40196 * 120.06961 * 180.02562 * 19 17 16 28 28 H 0.96998 * 119.99971 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.36942 * 322.98869 * 10 9 7 30 30 H 1.09003 * 110.36740 * 85.20576 * 10 9 7 31 31 H 1.08997 * 111.00694 * 81.11774 * 11 10 9 32 32 H 1.09007 * 111.00463 * 204.97240 * 11 10 9 33 33 H 1.08999 * 110.62008 * 277.00763 * 12 11 10 34 34 H 1.09002 * 110.75484 * 153.77928 * 12 11 10 35 35 H 1.09002 * 109.47426 * 295.50340 * 15 13 9 36 36 H 1.09000 * 109.46823 * 55.50023 * 15 13 9 37 37 H 0.97002 * 119.99808 * 4.65603 * 16 15 13 38 38 H 1.07994 * 119.14667 * 180.27721 * 21 20 19 39 39 H 1.07999 * 120.43077 * 179.67760 * 22 21 20 40 40 H 1.07995 * 124.91895 * 179.97438 * 25 24 23 41 41 H 1.07996 * 126.89031 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1119 -2.5502 0.2846 11 6 -0.2607 -4.0149 0.7664 12 6 0.7668 -4.7457 -0.1399 13 6 1.9024 -3.7105 -0.2821 14 1 2.6954 -3.9296 0.4331 15 6 2.4594 -3.7416 -1.7067 16 7 3.1265 -5.0245 -1.9425 17 6 3.7769 -5.2427 -3.1025 18 8 3.8105 -4.3748 -3.9530 19 6 4.4503 -6.5366 -3.3401 20 7 4.4199 -7.4834 -2.4091 21 6 5.0019 -8.6518 -2.5827 22 6 5.6905 -8.9558 -3.7440 23 6 5.7643 -8.0063 -4.7545 24 8 6.3307 -7.9658 -5.9729 25 6 6.1031 -6.7816 -6.5674 26 6 5.3745 -5.9915 -5.7619 27 6 5.1277 -6.7650 -4.5460 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4240 -1.8596 1.0680 30 1 -0.6981 -2.3869 -0.6198 31 1 0.0102 -4.1098 1.8179 32 1 -1.2714 -4.3834 0.5902 33 1 0.3282 -4.9729 -1.1115 34 1 1.1302 -5.6532 0.3421 35 1 1.6431 -3.6203 -2.4188 36 1 3.1763 -2.9305 -1.8343 37 1 3.1000 -5.7168 -1.2636 38 1 4.9446 -9.3900 -1.7965 39 1 6.1647 -9.9189 -3.8625 40 1 6.4552 -6.5055 -7.5504 41 1 5.0387 -4.9865 -5.9703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028039933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:30 Heat of formation + Delta-G solvation = 11.507555 kcal Electronic energy + Delta-G solvation = -25520.265878 eV Core-core repulsion = 21787.616298 eV Total energy + Delta-G solvation = -3732.649580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.75049 -41.12165 -39.78078 -39.12954 -35.86678 -34.43098 -33.98916 -32.96775 -31.49233 -31.05736 -30.12943 -26.92857 -26.34412 -25.14446 -24.05638 -23.14542 -22.08553 -21.53590 -21.16110 -19.31247 -18.98029 -18.56422 -17.88088 -17.43376 -17.35328 -16.68831 -16.43853 -16.29471 -15.98903 -15.68990 -15.36758 -14.97493 -14.82621 -14.34846 -14.22756 -13.95783 -13.91827 -13.66227 -13.42186 -13.04426 -12.93960 -12.87085 -12.70869 -11.99290 -11.89291 -11.71155 -11.49022 -11.44646 -11.43366 -11.40912 -10.85227 -10.70105 -10.56881 -10.18836 -9.41808 -8.87762 -7.89164 -5.26876 -0.78584 0.07431 1.21005 1.43103 1.45036 1.54703 1.57439 1.62936 1.95947 2.48050 2.72596 3.04237 3.28443 3.31284 3.47893 3.72342 3.83739 3.93707 3.97773 4.01819 4.22340 4.27574 4.31722 4.41648 4.53313 4.58694 4.70944 4.74406 4.85252 4.94729 4.98986 5.13383 5.17443 5.20105 5.30810 5.34482 5.46263 5.53502 5.66575 5.78058 5.85163 6.22103 6.36287 6.72016 7.07985 7.10280 7.74789 8.40599 9.21527 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.003107 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.999770 B = 9011.030763 C =10077.102626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.049 0.951 15 C 0.128 3.872 16 N -0.687 5.687 17 C 0.558 3.442 18 O -0.570 6.570 19 C 0.107 3.893 20 N -0.469 5.469 21 C 0.107 3.893 22 C -0.112 4.112 23 C 0.063 3.937 24 O -0.187 6.187 25 C 0.041 3.959 26 C -0.223 4.223 27 C -0.156 4.156 28 H 0.248 0.752 29 H 0.039 0.961 30 H -0.008 1.008 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.420 0.580 38 H 0.220 0.780 39 H 0.192 0.808 40 H 0.263 0.737 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.506 -23.612 -7.854 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.253 4.253 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.170 4.170 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.339 5.339 17 C 0.344 3.656 18 O -0.449 6.449 19 C -0.035 4.035 20 N -0.182 5.182 21 C -0.048 4.048 22 C -0.132 4.132 23 C 0.008 3.992 24 O -0.087 6.087 25 C -0.023 4.023 26 C -0.243 4.243 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.010 0.990 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.258 0.742 38 H 0.237 0.763 39 H 0.209 0.791 40 H 0.279 0.721 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.176 -22.810 -7.737 26.553 hybrid contribution 0.397 1.559 -0.729 1.766 sum 11.573 -21.251 -8.467 25.637 Atomic orbital electron populations 1.70148 1.06215 1.25333 1.57552 1.25666 0.96549 1.00927 1.02118 0.85107 0.78213 0.79807 0.76816 1.19358 1.22078 1.21365 1.19328 0.90698 0.83641 1.43250 0.90751 1.44760 1.06396 1.01826 1.80498 1.21296 0.83854 0.93587 0.96470 1.22894 0.99501 0.95253 0.99391 1.22631 0.95071 0.97321 1.00164 1.21313 0.95986 0.86862 0.91709 0.93332 1.21804 0.95189 0.83846 0.98983 1.45726 1.52303 1.17754 1.18070 1.18223 0.78807 0.86290 0.82320 1.90745 1.62301 1.46071 1.45786 1.20369 0.98555 0.93929 0.90604 1.67614 1.18701 1.02149 1.29728 1.23409 0.91658 0.92968 0.96766 1.21756 1.01061 1.00258 0.90168 1.20101 0.96328 0.95550 0.87191 1.84001 1.63136 1.36357 1.25198 1.25066 0.96885 0.80797 0.99587 1.22776 1.05792 1.02629 0.93136 1.20955 1.01603 0.96755 0.96719 0.94262 0.94250 0.98968 0.91064 0.89719 0.91609 0.87850 0.94030 0.94309 0.74247 0.76331 0.79113 0.72113 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.60 10.54 21.65 0.23 -57.37 16 2 C -0.06 -3.42 5.47 84.86 0.46 -2.96 16 3 Si 0.97 47.21 29.55 68.60 2.03 49.23 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.24 -13.71 9.73 84.03 0.82 -12.89 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -31.46 3.13 -668.26 -2.09 -33.55 16 10 C 0.17 8.55 5.42 86.86 0.47 9.02 16 11 C -0.13 -4.67 7.10 32.03 0.23 -4.44 16 12 C -0.11 -3.65 6.07 31.83 0.19 -3.45 16 13 C 0.15 6.00 3.22 45.34 0.15 6.14 16 14 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 15 C 0.13 5.29 5.09 86.38 0.44 5.73 16 16 N -0.69 -23.17 5.39 -466.03 -2.51 -25.68 16 17 C 0.56 20.15 7.80 86.77 0.68 20.83 16 18 O -0.57 -24.56 15.20 -3.92 -0.06 -24.62 16 19 C 0.11 3.14 6.78 42.00 0.28 3.42 16 20 N -0.47 -10.73 9.55 -184.55 -1.76 -12.49 16 21 C 0.11 1.49 11.13 84.75 0.94 2.43 16 22 C -0.11 -1.45 10.13 22.45 0.23 -1.22 16 23 C 0.06 1.26 7.48 23.11 0.17 1.44 16 24 O -0.19 -3.31 10.57 -5.07 -0.05 -3.36 16 25 C 0.04 0.63 11.97 66.92 0.80 1.43 16 26 C -0.22 -5.46 10.31 23.44 0.24 -5.22 16 27 C -0.16 -4.21 6.16 -20.04 -0.12 -4.33 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.04 2.19 6.86 -2.39 -0.02 2.17 16 30 H -0.01 -0.43 8.08 -2.39 -0.02 -0.44 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 33 H 0.07 2.10 7.78 -2.39 -0.02 2.08 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 36 H 0.04 1.85 7.86 -2.39 -0.02 1.83 16 37 H 0.42 11.72 7.59 -92.71 -0.70 11.02 16 38 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.26 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.16 4.28 7.29 -2.91 -0.02 4.26 16 Total: -1.00 -79.48 345.51 2.12 -77.36 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.36 Total: 14.56 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 5.98 Total: 15.93 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -6.14 Total: -129.10 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.11 Total: -27.98 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.23 kcal Total: -79.48 2.12 -77.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028039933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.867 kcal (2) G-P(sol) polarization free energy of solvation -79.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds