Wall clock time and date at job start Tue Mar 31 2020 10:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48493 * 109.47541 * 240.00597 * 3 2 1 5 5 H 1.48505 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47119 * 120.00200 * 3 2 1 7 7 C 1.38812 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99231 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00361 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.64685 * 0.03065 * 9 7 2 11 11 C 1.54331 * 107.26792 * 178.91819 * 10 9 7 12 12 C 1.55157 * 102.94428 * 337.80304 * 11 10 9 13 13 H 1.09002 * 111.00093 * 277.39393 * 12 11 10 14 14 C 1.52994 * 111.00208 * 153.57921 * 12 11 10 15 15 N 1.46500 * 109.47029 * 175.00139 * 14 12 11 16 16 C 1.34775 * 119.99916 * 179.97438 * 15 14 12 17 17 O 1.21657 * 120.00237 * 0.02562 * 16 15 14 18 18 C 1.46991 * 119.99684 * 180.02562 * 16 15 14 19 19 C 1.35844 * 125.11535 * 180.02562 * 18 16 15 20 20 C 1.46097 * 106.06860 * 180.02562 * 19 18 16 21 21 C 1.39450 * 135.08183 * 180.02562 * 20 19 18 22 22 N 1.31670 * 120.07835 * 179.97438 * 21 20 19 23 23 C 1.32308 * 122.14256 * 359.97438 * 22 21 20 24 24 C 1.37752 * 121.58612 * 359.78064 * 23 22 21 25 25 C 1.39240 * 118.95133 * 0.44198 * 24 23 22 26 26 O 1.34287 * 134.37759 * 179.88786 * 25 24 23 27 27 C 1.47428 * 125.64959 * 180.02562 * 9 7 2 28 28 H 0.96995 * 120.00332 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.88380 * 59.50226 * 10 9 7 30 30 H 1.08998 * 109.87954 * 298.33193 * 10 9 7 31 31 H 1.09005 * 110.71713 * 219.43997 * 11 10 9 32 32 H 1.09000 * 110.87060 * 96.24409 * 11 10 9 33 33 H 1.08998 * 109.47378 * 55.00016 * 14 12 11 34 34 H 1.09009 * 109.47020 * 294.99912 * 14 12 11 35 35 H 0.97001 * 119.99589 * 0.02562 * 15 14 12 36 36 H 1.08006 * 126.96969 * 0.05639 * 19 18 16 37 37 H 1.08002 * 119.96020 * 359.96067 * 21 20 19 38 38 H 1.07998 * 119.20743 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.52884 * 180.02562 * 24 23 22 40 40 H 1.08994 * 110.36824 * 85.31507 * 27 9 7 41 41 H 1.09003 * 110.36766 * 322.98569 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1374 -2.5328 -0.0006 11 6 -0.4483 -4.0442 -0.0284 12 6 0.8521 -4.6558 -0.6136 13 1 0.8567 -4.5957 -1.7019 14 6 1.0371 -6.1007 -0.1461 15 7 2.2061 -6.6828 -0.8101 16 6 2.5646 -7.9557 -0.5498 17 8 1.9172 -8.6215 0.2361 18 6 3.7378 -8.5396 -1.2156 19 6 4.1905 -9.8071 -1.0316 20 6 5.3665 -9.9447 -1.8874 21 6 6.2743 -10.9673 -2.1613 22 7 7.2586 -10.7655 -3.0122 23 6 7.4269 -9.6090 -3.6325 24 6 6.5738 -8.5477 -3.4242 25 6 5.5159 -8.6984 -2.5315 26 8 4.5276 -7.8969 -2.1026 27 6 1.9336 -3.7311 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5575 -2.0516 -0.8839 30 1 -0.5542 -2.0851 0.9015 31 1 -1.2984 -4.2512 -0.6786 32 1 -0.6332 -4.4212 0.9775 33 1 0.1495 -6.6808 -0.3986 34 1 1.1869 -6.1170 0.9335 35 1 2.7225 -6.1519 -1.4364 36 1 3.7667 -10.5606 -0.3842 37 1 6.1699 -11.9258 -1.6747 38 1 8.2507 -9.4956 -4.3216 39 1 6.7270 -7.6113 -3.9401 40 1 2.1660 -4.0423 1.0178 41 1 2.8334 -3.7403 -0.6157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028660092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:33 Heat of formation + Delta-G solvation = 9.526806 kcal Electronic energy + Delta-G solvation = -24848.504219 eV Core-core repulsion = 21115.768748 eV Total energy + Delta-G solvation = -3732.735472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.84284 -40.91283 -39.95102 -39.26104 -36.23456 -34.41029 -34.09850 -32.81288 -31.81792 -31.01384 -29.87828 -27.49986 -26.21037 -24.86191 -24.39105 -22.97667 -22.17658 -21.75204 -21.33580 -19.61984 -19.06254 -18.75481 -17.75616 -17.49181 -16.95862 -16.69566 -16.62714 -16.46863 -15.94216 -15.62827 -15.52199 -15.04589 -14.70208 -14.46556 -14.44341 -14.28954 -13.99548 -13.83358 -13.47086 -13.06682 -12.79871 -12.65245 -12.62566 -12.08360 -12.03249 -11.87681 -11.59138 -11.52011 -11.50374 -11.42601 -10.80285 -10.70616 -10.58010 -10.29829 -9.51054 -8.90789 -7.85962 -5.21526 -0.69608 0.10838 0.59478 1.16177 1.44857 1.47982 1.54316 1.91277 1.94869 2.48691 2.66739 3.16209 3.31644 3.31986 3.47134 3.57671 3.73956 3.76042 3.84033 3.99327 4.01899 4.14361 4.28842 4.41452 4.59863 4.61342 4.65087 4.68411 4.78004 4.83881 4.89365 4.99194 5.00127 5.07730 5.15787 5.31180 5.40888 5.44313 5.67687 5.68245 5.77703 6.19557 6.27284 6.83362 6.84170 7.09811 7.77398 8.41413 9.24262 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.002569 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.145052 B =10897.665504 C =12211.543318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.097 4.097 13 H 0.089 0.911 14 C 0.141 3.859 15 N -0.704 5.704 16 C 0.601 3.399 17 O -0.545 6.545 18 C -0.045 4.045 19 C -0.083 4.083 20 C -0.216 4.216 21 C 0.178 3.822 22 N -0.513 5.513 23 C 0.123 3.877 24 C -0.165 4.165 25 C 0.085 3.915 26 O -0.187 6.187 27 C 0.136 3.864 28 H 0.247 0.753 29 H 0.013 0.987 30 H 0.005 0.995 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.203 0.797 39 H 0.168 0.832 40 H 0.020 0.980 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.037 -22.372 -7.012 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.117 4.117 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.353 5.353 16 C 0.386 3.614 17 O -0.425 6.425 18 C -0.095 4.095 19 C -0.105 4.105 20 C -0.219 4.219 21 C 0.014 3.986 22 N -0.223 5.223 23 C -0.026 4.026 24 C -0.185 4.185 25 C 0.030 3.970 26 O -0.087 6.087 27 C 0.011 3.989 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.023 0.977 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.251 0.749 36 H 0.210 0.790 37 H 0.211 0.789 38 H 0.219 0.781 39 H 0.186 0.814 40 H 0.038 0.962 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.073 -22.907 -6.748 26.322 hybrid contribution -0.272 2.348 0.114 2.366 sum 10.800 -20.559 -6.635 24.152 Atomic orbital electron populations 1.70177 1.06283 1.25354 1.58224 1.25663 0.96637 1.01069 1.02646 0.85158 0.77152 0.78812 0.78249 1.20103 1.22067 1.20444 1.19422 0.90991 0.83841 1.43092 0.90062 1.44798 1.02580 1.01153 1.87039 1.20939 0.83692 0.91988 0.97707 1.22721 0.96944 0.94781 1.01512 1.22434 0.96171 0.92264 1.00782 0.89242 1.21366 0.87670 0.91901 0.97232 1.45948 1.31097 1.12397 1.45894 1.16685 0.81710 0.82021 0.80940 1.90879 1.53528 1.61733 1.36322 1.21979 0.96000 0.93797 0.97696 1.22974 0.93420 0.95654 0.98481 1.21125 1.00578 0.97120 1.03063 1.22930 0.86342 0.98119 0.91182 1.67909 1.20900 1.24471 1.08998 1.23226 0.97380 0.86171 0.95857 1.21443 0.93274 1.03998 0.99801 1.20371 0.90489 0.89159 0.96999 1.83960 1.34365 1.40102 1.50303 1.21786 0.95297 0.84604 0.97215 0.94398 0.96922 0.97706 0.89394 0.90663 0.89470 0.91122 0.74917 0.78979 0.78921 0.78072 0.81402 0.96179 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.31 21.65 0.22 -57.21 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.74 29.55 68.60 2.03 47.76 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.24 -13.69 10.28 84.03 0.86 -12.83 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.63 -31.99 3.39 -691.93 -2.35 -34.33 16 10 C 0.18 8.84 5.37 86.73 0.47 9.31 16 11 C -0.12 -4.10 6.42 31.79 0.20 -3.89 16 12 C -0.10 -2.92 3.05 -9.40 -0.03 -2.95 16 13 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 14 C 0.14 3.53 5.13 86.38 0.44 3.98 16 15 N -0.70 -16.56 5.50 -466.79 -2.57 -19.12 16 16 C 0.60 15.16 7.80 86.54 0.67 15.83 16 17 O -0.54 -16.40 16.83 -4.21 -0.07 -16.47 16 18 C -0.05 -1.02 7.07 24.01 0.17 -0.85 16 19 C -0.08 -1.56 10.80 23.75 0.26 -1.30 16 20 C -0.22 -3.85 6.43 -20.25 -0.13 -3.98 16 21 C 0.18 2.57 11.28 85.01 0.96 3.53 16 22 N -0.51 -8.02 10.34 -195.04 -2.02 -10.04 16 23 C 0.12 1.49 11.13 84.51 0.94 2.44 16 24 C -0.17 -2.31 10.13 22.40 0.23 -2.08 16 25 C 0.09 1.66 7.48 23.21 0.17 1.83 16 26 O -0.19 -4.11 10.26 -9.68 -0.10 -4.21 16 27 C 0.14 5.25 6.65 86.86 0.58 5.83 16 28 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.01 0.69 7.38 -2.39 -0.02 0.67 16 30 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 31 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 1.88 7.96 -2.38 -0.02 1.86 16 35 H 0.41 8.88 8.19 -92.71 -0.76 8.12 16 36 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 39 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.02 0.79 7.91 -2.39 -0.02 0.77 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -72.94 349.93 1.71 -71.23 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.30 Total: 10.91 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 6.26 Total: 11.49 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -6.71 Total: -120.71 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.17 Total: -20.67 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.94 1.71 -71.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028660092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.752 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds