Wall clock time and date at job start Tue Mar 31 2020 10:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00333 * 2 1 4 4 H 1.48498 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46993 * 300.00381 * 3 2 1 6 6 H 1.48503 * 109.46759 * 60.00019 * 3 2 1 7 7 C 1.38815 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.64923 * 359.97438 * 9 7 2 11 11 C 1.54911 * 104.83343 * 155.90183 * 10 9 7 12 12 C 1.55153 * 101.58342 * 37.00671 * 11 10 9 13 13 H 1.09003 * 110.72239 * 83.03379 * 12 11 10 14 14 C 1.52993 * 110.72204 * 206.13527 * 12 11 10 15 15 N 1.46502 * 109.47529 * 182.55795 * 14 12 11 16 16 C 1.34774 * 120.00094 * 179.97438 * 15 14 12 17 17 O 1.21651 * 120.00055 * 0.02562 * 16 15 14 18 18 C 1.46987 * 119.99812 * 179.97438 * 16 15 14 19 19 C 1.35841 * 125.11878 * 180.02562 * 18 16 15 20 20 C 1.46102 * 106.06925 * 179.97438 * 19 18 16 21 21 C 1.39446 * 135.07652 * 180.02562 * 20 19 18 22 22 N 1.31679 * 120.07504 * 180.02562 * 21 20 19 23 23 C 1.32305 * 122.14301 * 359.97438 * 22 21 20 24 24 C 1.37754 * 121.58308 * 359.97438 * 23 22 21 25 25 C 1.39244 * 118.95490 * 0.02677 * 24 23 22 26 26 O 1.34284 * 134.37831 * 179.97438 * 25 24 23 27 27 C 1.47319 * 125.61453 * 180.19184 * 9 7 2 28 28 H 0.96999 * 119.99432 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.36530 * 37.05605 * 10 9 7 30 30 H 1.09002 * 110.45372 * 274.78799 * 10 9 7 31 31 H 1.08998 * 110.99682 * 278.93299 * 11 10 9 32 32 H 1.08997 * 111.03527 * 155.09715 * 11 10 9 33 33 H 1.09002 * 109.46832 * 62.55789 * 14 12 11 34 34 H 1.08998 * 109.47384 * 302.56334 * 14 12 11 35 35 H 0.97000 * 119.99441 * 0.02562 * 15 14 12 36 36 H 1.07999 * 126.96956 * 359.95323 * 19 18 16 37 37 H 1.07997 * 119.96006 * 0.04395 * 21 20 19 38 38 H 1.08000 * 119.21020 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.52675 * 179.97438 * 24 23 22 40 40 H 1.09008 * 110.05873 * 61.69435 * 27 9 7 41 41 H 1.08995 * 109.85438 * 300.42930 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1417 -2.5332 0.0005 11 6 -0.4023 -3.9323 -0.6113 12 6 0.7782 -4.7525 -0.0273 13 1 0.5452 -5.1008 0.9790 14 6 1.1221 -5.9313 -0.9399 15 7 2.1971 -6.7208 -0.3338 16 6 2.6667 -7.8156 -0.9640 17 8 2.1983 -8.1480 -2.0364 18 6 3.7456 -8.6074 -0.3561 19 6 4.2958 -9.7248 -0.8984 20 6 5.3199 -10.1695 0.0439 21 6 6.2285 -11.2264 0.0885 22 7 7.0449 -11.3520 1.1140 23 6 7.0403 -10.4996 2.1259 24 6 6.1763 -9.4272 2.1620 25 6 5.2884 -9.2411 1.1056 26 8 4.3399 -8.3329 0.8249 27 6 1.9337 -3.7299 0.0029 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5999 -1.7587 -0.6145 30 1 -0.5283 -2.4863 1.0186 31 1 -0.3535 -3.8979 -1.6997 32 1 -1.3594 -4.3331 -0.2777 33 1 1.4492 -5.5564 -1.9098 34 1 0.2404 -6.5584 -1.0714 35 1 2.5703 -6.4559 0.5214 36 1 4.0298 -10.1904 -1.8359 37 1 6.2629 -11.9425 -0.7192 38 1 7.7310 -10.6476 2.9429 39 1 6.1869 -8.7421 2.9968 40 1 2.5280 -3.8687 0.9062 41 1 2.5616 -3.8540 -0.8793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028660093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:36 Heat of formation + Delta-G solvation = 32.663305 kcal Electronic energy + Delta-G solvation = -24867.735550 eV Core-core repulsion = 21136.003352 eV Total energy + Delta-G solvation = -3731.732198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.10743 -39.93269 -39.21508 -37.71703 -34.92481 -33.37972 -32.66131 -32.09348 -30.54969 -29.73506 -28.34880 -26.03300 -24.91303 -23.90915 -23.35386 -22.17989 -21.12182 -20.19646 -19.84283 -18.58292 -18.37832 -16.94320 -16.88150 -16.44054 -16.11062 -15.83548 -15.48180 -14.92198 -14.85612 -14.59223 -14.29241 -13.83816 -13.78350 -13.62624 -13.52449 -12.95180 -12.56590 -12.03916 -11.84923 -11.78101 -11.57202 -10.98920 -10.85522 -10.81000 -10.72972 -10.38166 -10.17803 -10.12129 -10.05224 -9.86452 -9.84774 -9.57393 -9.26435 -8.79943 -8.69015 -6.87688 -5.69208 -3.10934 0.01434 0.78783 1.34762 1.93078 2.85345 2.89684 3.28920 3.37290 3.42872 3.45350 3.89046 3.93054 4.13454 4.40666 4.45215 4.52617 4.75953 4.91506 4.99751 5.15957 5.20642 5.27192 5.32906 5.46040 5.47867 5.61225 5.68130 5.79114 5.89889 5.94493 6.00737 6.17101 6.28580 6.39601 6.49477 6.52369 6.64580 6.83527 7.25072 7.44856 7.46940 7.59104 7.81203 7.83004 8.32451 9.18461 9.79015 10.43515 11.34915 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.002511 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.192939 B =11148.786030 C =12151.182165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.130 3.870 15 N -0.707 5.707 16 C 0.596 3.404 17 O -0.515 6.515 18 C -0.019 4.019 19 C -0.100 4.100 20 C -0.200 4.200 21 C 0.175 3.825 22 N -0.494 5.494 23 C 0.117 3.883 24 C -0.159 4.159 25 C 0.105 3.895 26 O -0.177 6.177 27 C 0.140 3.860 28 H 0.252 0.748 29 H 0.108 0.892 30 H 0.012 0.988 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.408 0.592 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.019 0.981 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 -21.730 2.519 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.096 0.904 14 C 0.007 3.993 15 N -0.357 5.357 16 C 0.380 3.620 17 O -0.393 6.393 18 C -0.069 4.069 19 C -0.122 4.122 20 C -0.203 4.203 21 C 0.011 3.989 22 N -0.204 5.204 23 C -0.033 4.033 24 C -0.180 4.180 25 C 0.049 3.951 26 O -0.077 6.077 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.195 0.805 37 H 0.184 0.816 38 H 0.187 0.813 39 H 0.166 0.834 40 H 0.037 0.963 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.725 -22.106 2.008 23.850 hybrid contribution 0.094 1.658 0.529 1.743 sum 8.819 -20.447 2.538 22.412 Atomic orbital electron populations 1.69802 1.04895 1.24704 1.57688 1.24796 0.95753 0.97762 1.02420 0.85993 0.78650 0.83553 0.77278 1.20533 1.21689 1.21733 1.19123 0.90528 0.82462 1.42980 0.90487 1.44582 1.01954 0.99669 1.86871 1.21939 0.84645 0.92499 0.98251 1.23008 0.95404 0.98558 1.00384 1.22466 0.98525 0.93874 0.98648 0.90419 1.21630 0.88773 0.91705 0.97185 1.46047 1.38483 1.26395 1.24776 1.16612 0.80515 0.80516 0.84372 1.90902 1.58256 1.69797 1.20337 1.22265 0.99189 0.99129 0.86297 1.22691 0.94468 0.94838 1.00235 1.20976 1.02101 1.00285 0.96984 1.22477 0.87713 0.93361 0.95368 1.67816 1.22758 1.28190 1.01677 1.22641 0.95624 0.88815 0.96183 1.21107 0.96635 1.01959 0.98276 1.19880 0.90475 0.88487 0.96238 1.84004 1.42389 1.46110 1.35152 1.21400 0.93409 0.86023 0.97804 0.93742 0.87440 0.96976 0.91721 0.91997 0.90549 0.90951 0.75633 0.80548 0.81552 0.81255 0.83377 0.96304 0.95696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.23 3.40 -169.82 -0.58 -15.81 16 10 C 0.15 3.58 5.89 -2.53 -0.01 3.57 16 11 C -0.13 -2.40 6.54 -24.58 -0.16 -2.56 16 12 C -0.12 -1.85 2.98 -88.79 -0.26 -2.11 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 14 C 0.13 1.80 5.00 -4.04 -0.02 1.78 16 15 N -0.71 -8.98 5.43 -61.53 -0.33 -9.31 16 16 C 0.60 7.95 7.80 -12.72 -0.10 7.85 16 17 O -0.52 -8.16 16.82 5.23 0.09 -8.07 16 18 C -0.02 -0.22 7.07 -36.90 -0.26 -0.48 16 19 C -0.10 -1.02 10.80 -37.29 -0.40 -1.42 16 20 C -0.20 -1.96 6.43 -105.22 -0.68 -2.63 16 21 C 0.17 1.46 11.28 -17.17 -0.19 1.27 16 22 N -0.49 -4.46 10.34 -13.00 -0.13 -4.60 16 23 C 0.12 0.86 11.13 -17.52 -0.20 0.67 16 24 C -0.16 -1.27 10.13 -39.38 -0.40 -1.67 16 25 C 0.10 1.09 7.48 -38.13 -0.29 0.80 16 26 O -0.18 -2.02 10.26 3.70 0.04 -1.98 16 27 C 0.14 2.78 6.67 -2.90 -0.02 2.76 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.14 8.05 -51.93 -0.42 0.73 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.41 4.68 8.12 -40.82 -0.33 4.35 16 36 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.03 0.51 7.73 -51.93 -0.40 0.10 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -32.67 349.01 -8.59 -41.26 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.22 Total: 1.35 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -3.24 Total: 1.07 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.49 Total: -55.82 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.13 Total: -10.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.67 -8.59 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028660093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.920 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds