Wall clock time and date at job start Tue Mar 31 2020 10:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21560 * 120.00427 * 359.97438 * 16 15 14 18 18 C 1.47791 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.32823 * 120.07090 * 0.02562 * 18 16 15 20 20 C 1.31671 * 122.00695 * 179.97438 * 19 18 16 21 21 C 1.38393 * 121.70386 * 359.97438 * 20 19 18 22 22 C 1.38860 * 119.13394 * 359.97438 * 21 20 19 23 23 O 1.34425 * 134.63681 * 179.97438 * 22 21 20 24 24 C 1.34450 * 110.85474 * 180.02562 * 23 22 21 25 25 C 1.34309 * 110.16459 * 359.97438 * 24 23 22 26 26 C 1.40203 * 120.07093 * 179.72514 * 18 16 15 27 27 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 30 30 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 31 31 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 32 32 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 33 33 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 34 34 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 35 35 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 36 36 H 1.08003 * 119.14728 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.43169 * 180.02562 * 21 20 19 38 38 H 1.08000 * 124.92009 * 179.97438 * 24 23 22 39 39 H 1.08002 * 126.89071 * 179.97438 * 25 24 23 40 40 H 1.09002 * 110.36518 * 322.70049 * 27 9 7 41 41 H 1.08995 * 110.36673 * 84.91158 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9600 -8.5957 0.3055 18 6 3.9180 -8.4381 -0.9592 19 7 4.6828 -7.6781 -1.7349 20 6 5.8121 -8.1191 -2.2486 21 6 6.2678 -9.4036 -2.0082 22 6 5.5147 -10.2487 -1.2039 23 8 5.6520 -11.5155 -0.7758 24 6 4.6163 -11.8722 0.0038 25 6 3.7521 -10.8508 0.1214 26 6 4.3112 -9.7508 -0.6625 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5503 -2.0832 0.9095 30 1 -0.5617 -2.0533 -0.8759 31 1 -1.3017 -4.2523 -0.6628 32 1 -0.6290 -4.4190 0.9906 33 1 1.0780 -6.1265 0.9518 34 1 0.1986 -6.7069 -0.4828 35 1 2.8421 -6.0795 -1.2533 36 1 6.3979 -7.4615 -2.8738 37 1 7.1975 -9.7439 -2.4398 38 1 4.4966 -12.8399 0.4681 39 1 2.8300 -10.8433 0.6836 40 1 2.8303 -3.7416 -0.6198 41 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028701665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:39 Heat of formation + Delta-G solvation = 34.530010 kcal Electronic energy + Delta-G solvation = -25146.150157 eV Core-core repulsion = 21414.498906 eV Total energy + Delta-G solvation = -3731.651251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.03261 -40.10719 -38.77341 -37.57215 -34.71306 -33.24028 -32.65519 -32.00323 -30.32043 -29.64524 -28.23226 -25.89657 -24.95156 -23.59408 -23.30860 -22.22262 -20.75968 -19.91684 -19.78718 -18.27996 -18.14396 -17.12249 -16.70537 -16.68665 -16.02201 -15.61839 -15.44610 -14.84154 -14.63607 -14.53167 -14.14304 -13.68210 -13.64257 -13.40168 -13.21132 -12.92017 -12.31172 -12.18923 -11.97054 -11.72152 -11.36969 -10.87437 -10.79333 -10.68207 -10.55774 -10.31212 -10.11722 -9.98208 -9.85438 -9.82265 -9.75175 -9.62925 -9.01507 -8.67596 -8.57962 -6.80258 -5.68937 -3.02117 0.00591 0.81404 1.93589 2.23180 2.58326 3.03773 3.41393 3.46822 3.49379 3.59084 3.85253 4.07989 4.17467 4.51455 4.54854 4.66455 4.84932 5.00015 5.13163 5.26875 5.32356 5.37069 5.45221 5.51963 5.56500 5.70677 5.89358 5.92096 5.98867 6.07434 6.08357 6.37292 6.43942 6.54739 6.55951 6.56373 6.71590 6.94847 7.29954 7.59086 7.62777 7.65955 7.85438 8.16001 8.28680 9.24899 9.85265 10.51441 11.43018 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.002612 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.370779 B =10717.718636 C =11654.588849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.131 3.869 15 N -0.700 5.700 16 C 0.568 3.432 17 O -0.534 6.534 18 C 0.141 3.859 19 N -0.460 5.460 20 C 0.112 3.888 21 C -0.138 4.138 22 C 0.079 3.921 23 O -0.189 6.189 24 C 0.002 3.998 25 C -0.175 4.175 26 C -0.135 4.135 27 C 0.142 3.858 28 H 0.251 0.749 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.177 0.823 37 H 0.149 0.851 38 H 0.216 0.784 39 H 0.174 0.826 40 H 0.037 0.963 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.655 -23.497 -3.695 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.350 5.350 16 C 0.351 3.649 17 O -0.410 6.410 18 C -0.003 4.003 19 N -0.173 5.173 20 C -0.042 4.042 21 C -0.158 4.158 22 C 0.024 3.976 23 O -0.089 6.089 24 C -0.062 4.062 25 C -0.194 4.194 26 C -0.139 4.139 27 C 0.015 3.985 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.194 0.806 37 H 0.167 0.833 38 H 0.232 0.768 39 H 0.192 0.808 40 H 0.055 0.945 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.059 -23.049 -3.438 25.003 hybrid contribution 0.908 0.333 -0.019 0.967 sum 9.967 -22.716 -3.457 25.046 Atomic orbital electron populations 1.69978 1.04876 1.24856 1.57315 1.24807 0.95731 0.97674 1.02393 0.86045 0.78719 0.83807 0.77208 1.20511 1.21785 1.21797 1.19113 0.90462 0.82429 1.43451 0.90415 1.44494 1.01741 0.99890 1.87152 1.21147 0.84347 0.88145 1.01103 1.22861 0.95408 0.99405 0.99654 1.22620 0.98654 0.91843 1.00666 0.90064 1.21492 0.84877 0.94001 0.98877 1.45941 1.24850 1.13113 1.51142 1.17653 0.83994 0.82319 0.80887 1.90757 1.53645 1.58783 1.37834 1.20790 0.95120 0.89183 0.95208 1.67697 1.05545 1.35845 1.08218 1.22642 0.92121 0.92529 0.96886 1.21218 1.01535 0.93294 0.99771 1.19719 0.95729 0.84193 0.97924 1.83975 1.43370 1.26030 1.55505 1.24291 0.86009 1.00726 0.95205 1.22736 1.02629 0.90812 1.03270 1.20641 0.96276 0.95765 1.01208 1.21572 0.94033 0.86077 0.96785 0.93843 0.93926 0.93516 0.91964 0.92196 0.91055 0.91363 0.75017 0.80596 0.83312 0.76764 0.80846 0.94450 0.96339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.31 55.49 0.57 -26.74 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.61 -15.57 3.39 -170.05 -0.58 -16.15 16 10 C 0.18 4.31 5.37 -3.06 -0.02 4.29 16 11 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 12 C -0.12 -2.00 3.11 -88.46 -0.27 -2.27 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C 0.13 1.94 5.12 -4.05 -0.02 1.92 16 15 N -0.70 -9.97 5.40 -61.27 -0.33 -10.30 16 16 C 0.57 8.48 7.80 -12.35 -0.10 8.39 16 17 O -0.53 -8.95 15.20 5.31 0.08 -8.87 16 18 C 0.14 1.88 6.78 -82.79 -0.56 1.32 16 19 N -0.46 -5.50 9.55 -9.68 -0.09 -5.59 16 20 C 0.11 0.98 11.13 -17.56 -0.20 0.79 16 21 C -0.14 -1.12 10.13 -39.29 -0.40 -1.52 16 22 C 0.08 0.83 7.48 -38.29 -0.29 0.54 16 23 O -0.19 -1.78 10.57 4.98 0.05 -1.73 16 24 C 0.00 0.01 11.97 29.35 0.35 0.37 16 25 C -0.17 -1.82 10.31 -37.78 -0.39 -2.21 16 26 C -0.13 -1.66 6.16 -104.90 -0.65 -2.31 16 27 C 0.14 2.90 6.41 -2.52 -0.02 2.89 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 30 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 33 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.41 5.61 7.68 -40.82 -0.31 5.30 16 36 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.22 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.17 1.81 7.29 -52.49 -0.38 1.43 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.39 8.01 -51.93 -0.42 -0.02 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -34.06 346.15 -8.29 -42.35 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.23 Total: 1.92 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.96 Total: 2.67 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.43 Total: -58.79 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.13 Total: -10.60 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.06 -8.29 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028701665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.877 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds