Wall clock time and date at job start Tue Mar 31 2020 10:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99928 * 2 1 4 4 H 1.48499 * 109.47513 * 270.00153 * 3 2 1 5 5 H 1.48504 * 109.47220 * 30.00215 * 3 2 1 6 6 H 1.48502 * 109.46740 * 150.00028 * 3 2 1 7 7 C 1.38814 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.47366 * 126.79584 * 0.28481 * 9 7 2 11 11 C 1.56012 * 105.15021 * 182.05697 * 10 9 7 12 12 H 1.09009 * 116.89246 * 159.04353 * 11 10 9 13 13 C 1.57436 * 99.69025 * 32.50415 * 11 10 9 14 14 C 1.49289 * 126.94334 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.78922 * 16.29035 * 14 9 7 16 16 C 1.56021 * 104.09477 * 246.67879 * 14 9 7 17 17 N 1.47869 * 105.10278 * 288.76855 * 16 14 9 18 18 C 1.34772 * 126.94423 * 181.97830 * 17 16 14 19 19 O 1.21359 * 120.00428 * 180.02562 * 18 17 16 20 20 C 1.49358 * 120.00184 * 0.02562 * 18 17 16 21 21 O 1.21376 * 119.99810 * 0.02562 * 20 18 17 22 22 N 1.34772 * 120.00184 * 180.02562 * 20 18 17 23 23 C 1.39728 * 119.99771 * 185.27878 * 22 20 18 24 24 C 1.38935 * 120.07190 * 213.29104 * 23 22 20 25 25 C 1.38093 * 119.92409 * 180.02562 * 24 23 22 26 26 C 1.38295 * 120.07236 * 359.97438 * 25 24 23 27 27 C 1.38292 * 120.15564 * 0.02562 * 26 25 24 28 28 C 1.38093 * 120.07602 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99817 * 0.02562 * 1 2 3 30 30 H 1.09009 * 110.42376 * 63.06887 * 10 9 7 31 31 H 1.08996 * 110.24052 * 300.95990 * 10 9 7 32 32 H 1.09003 * 112.53431 * 191.97775 * 13 11 10 33 33 H 1.09004 * 112.39602 * 64.46434 * 13 11 10 34 34 H 1.09001 * 110.31612 * 169.86162 * 16 14 9 35 35 H 1.08998 * 110.31645 * 47.67284 * 16 14 9 36 36 H 0.96998 * 120.00188 * 5.27857 * 22 20 18 37 37 H 1.08004 * 120.03708 * 0.04544 * 24 23 22 38 38 H 1.08001 * 119.96734 * 180.25694 * 25 24 23 39 39 H 1.07999 * 119.92175 * 180.02562 * 26 25 24 40 40 H 1.08001 * 119.96077 * 179.97438 * 27 26 25 41 41 H 1.08002 * 120.04121 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1377 -2.5623 -0.0059 11 6 -0.3648 -4.1048 0.0508 12 1 -1.3376 -4.4473 0.4038 13 6 0.8846 -4.5252 0.9115 14 6 1.9102 -3.7617 -0.0005 15 1 2.9619 -3.8480 0.2724 16 6 1.5077 -4.3459 -1.3901 17 7 0.0510 -4.5836 -1.3009 18 6 -0.7420 -5.1191 -2.2500 19 8 -1.9296 -5.2572 -2.0416 20 6 -0.1594 -5.5425 -3.5584 21 8 1.0284 -5.4048 -3.7668 22 7 -0.9525 -6.0775 -4.5077 23 6 -0.3923 -6.5747 -5.6873 24 6 -1.0931 -6.4828 -6.8835 25 6 -0.5368 -6.9757 -8.0474 26 6 0.7166 -7.5597 -8.0232 27 6 1.4168 -7.6528 -6.8344 28 6 0.8661 -7.1629 -5.6666 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5666 -2.1499 -0.9193 31 1 -0.5778 -2.0826 0.8683 32 1 1.0497 -5.6026 0.9096 33 1 0.8475 -4.1201 1.9228 34 1 2.0336 -5.2829 -1.5734 35 1 1.7262 -3.6276 -2.1803 36 1 -1.9121 -6.1173 -4.3721 37 1 -2.0716 -6.0262 -6.9031 38 1 -1.0792 -6.9009 -8.9783 39 1 1.1495 -7.9440 -8.9350 40 1 2.3952 -8.1099 -6.8191 41 1 1.4133 -7.2363 -4.7384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032496971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:37 Heat of formation + Delta-G solvation = 12.488808 kcal Electronic energy + Delta-G solvation = -26104.359135 eV Core-core repulsion = 22371.752105 eV Total energy + Delta-G solvation = -3732.607030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31939 -41.21818 -39.72445 -38.99213 -36.19752 -35.40499 -33.34288 -31.87710 -30.97395 -30.64202 -30.35140 -27.06220 -26.67588 -24.91575 -23.86711 -23.09654 -21.79448 -21.45360 -20.57915 -19.54124 -18.66679 -18.40713 -17.87510 -17.38975 -17.17583 -16.87612 -16.26502 -15.90286 -15.79330 -15.26612 -15.14631 -14.89106 -14.65709 -14.31002 -13.95585 -13.82535 -13.70153 -13.49915 -13.18540 -12.93737 -12.89644 -12.72471 -12.45022 -12.32714 -12.22197 -12.17812 -12.06507 -11.91002 -11.58321 -11.50294 -10.90018 -10.62860 -9.89634 -9.78586 -9.22526 -8.93226 -7.86542 -5.22042 -0.09528 0.43935 0.59058 1.08739 1.46270 1.47754 1.56248 1.99932 2.29969 2.47367 2.85853 3.12261 3.31090 3.39001 3.67478 3.81925 3.94869 3.96210 4.03529 4.14796 4.29311 4.45285 4.51731 4.51767 4.54342 4.60695 4.71449 4.91221 4.97500 5.08114 5.08356 5.18055 5.25066 5.26093 5.41714 5.42686 5.50019 5.59325 5.62939 5.91225 6.04363 6.08784 6.27636 6.51385 6.78108 7.02557 7.68952 8.38088 9.24534 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.003352 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.946126 B = 8352.431300 C = 8880.596366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.293 1.293 5 H -0.298 1.298 6 H -0.262 1.262 7 C -0.232 4.232 8 H 0.093 0.907 9 N -0.617 5.617 10 C 0.187 3.813 11 C 0.103 3.897 12 H 0.133 0.867 13 C -0.127 4.127 14 C 0.132 3.868 15 H 0.137 0.863 16 C 0.103 3.897 17 N -0.577 5.577 18 C 0.515 3.485 19 O -0.552 6.552 20 C 0.512 3.488 21 O -0.510 6.510 22 N -0.637 5.637 23 C 0.119 3.881 24 C -0.146 4.146 25 C -0.101 4.101 26 C -0.132 4.132 27 C -0.107 4.107 28 C -0.142 4.142 29 H 0.245 0.755 30 H -0.004 1.004 31 H 0.030 0.970 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.428 0.572 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -18.199 -11.157 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.220 1.220 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.361 4.361 8 H 0.111 0.889 9 N -0.341 5.341 10 C 0.061 3.939 11 C 0.001 3.999 12 H 0.150 0.850 13 C -0.166 4.166 14 C 0.025 3.975 15 H 0.154 0.846 16 C -0.021 4.021 17 N -0.309 5.309 18 C 0.298 3.702 19 O -0.432 6.432 20 C 0.294 3.706 21 O -0.384 6.384 22 N -0.284 5.284 23 C 0.026 3.974 24 C -0.166 4.166 25 C -0.119 4.119 26 C -0.150 4.150 27 C -0.126 4.126 28 C -0.162 4.162 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.268 0.732 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.885 -17.931 -11.178 21.149 hybrid contribution -0.505 1.556 0.076 1.637 sum 0.381 -16.376 -11.103 19.788 Atomic orbital electron populations 1.70135 1.06462 1.25226 1.58657 1.25652 0.96493 1.01119 1.02991 0.85085 0.77919 0.79266 0.77112 1.22048 1.22501 1.18653 1.19526 0.91275 0.83147 1.42135 0.88884 1.45382 1.01629 1.01018 1.86083 1.21461 0.84971 0.89792 0.97723 1.24569 1.00375 0.94371 0.80619 0.84966 1.24147 0.93103 1.00980 0.98324 1.23669 0.98690 0.83457 0.91655 0.84560 1.23266 0.78285 1.00411 1.00185 1.49166 1.10776 1.56009 1.14952 1.19694 0.85979 0.79781 0.84756 1.90712 1.15142 1.56977 1.80418 1.20134 0.86699 0.78421 0.85323 1.90762 1.15759 1.52182 1.79679 1.43083 1.12151 1.57601 1.15613 1.18041 0.95540 0.98161 0.85688 1.21231 1.01920 1.02797 0.90695 1.21367 0.95766 0.96687 0.98058 1.21570 0.95002 0.99779 0.98694 1.21328 1.00680 0.98681 0.91867 1.21231 0.95400 0.99350 1.00226 0.94597 0.98563 0.95186 0.87619 0.88995 0.89032 0.93571 0.73238 0.83885 0.82554 0.82947 0.83831 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.98 10.53 21.65 0.23 -57.75 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.23 -12.48 10.37 84.03 0.87 -11.61 16 8 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 9 N -0.62 -29.99 3.01 -649.87 -1.95 -31.94 16 10 C 0.19 9.18 4.74 87.26 0.41 9.60 16 11 C 0.10 3.83 5.25 47.06 0.25 4.08 16 12 H 0.13 4.57 8.06 -2.38 -0.02 4.55 16 13 C -0.13 -3.86 6.83 33.58 0.23 -3.63 16 14 C 0.13 4.73 5.53 46.92 0.26 4.99 16 15 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 16 C 0.10 3.70 4.90 87.16 0.43 4.13 16 17 N -0.58 -21.52 2.95 -769.25 -2.27 -23.78 16 18 C 0.51 18.86 7.96 87.24 0.69 19.56 16 19 O -0.55 -21.41 16.83 -3.27 -0.06 -21.46 16 20 C 0.51 16.91 7.60 87.24 0.66 17.57 16 21 O -0.51 -18.35 12.05 -3.33 -0.04 -18.39 16 22 N -0.64 -17.03 5.32 -304.83 -1.62 -18.65 16 23 C 0.12 2.93 6.28 38.21 0.24 3.17 16 24 C -0.15 -2.80 9.96 22.40 0.22 -2.57 16 25 C -0.10 -1.52 10.04 22.25 0.22 -1.30 16 26 C -0.13 -1.99 10.04 22.30 0.22 -1.77 16 27 C -0.11 -2.03 10.04 22.25 0.22 -1.80 16 28 C -0.14 -3.53 8.65 22.40 0.19 -3.33 16 29 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.00 -0.22 7.68 -2.38 -0.02 -0.24 16 31 H 0.03 1.64 7.42 -2.39 -0.02 1.62 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.09 2.83 7.66 -2.39 -0.02 2.81 16 35 H 0.05 1.99 7.85 -2.39 -0.02 1.97 16 36 H 0.43 9.89 8.30 -92.71 -0.77 9.12 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.12 3.25 6.42 -2.91 -0.02 3.24 16 Total: -1.00 -72.14 341.43 2.21 -69.92 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.30 Total: 20.76 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 5.60 Total: 33.60 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -5.62 Total: -132.13 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.10 Total: -39.85 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.14 2.21 -69.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032496971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.413 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds