Wall clock time and date at job start Tue Mar 31 2020 10:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00152 * 2 1 4 4 H 1.48497 * 109.46945 * 274.98859 * 3 2 1 5 5 H 1.48497 * 109.47071 * 34.98375 * 3 2 1 6 6 H 1.48496 * 109.47082 * 154.98622 * 3 2 1 7 7 C 1.38815 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99441 * 172.75970 * 7 2 1 9 9 N 1.36931 * 120.00095 * 352.77161 * 7 2 1 10 10 C 1.47873 * 126.94568 * 353.34036 * 9 7 2 11 11 C 1.56017 * 105.10382 * 182.00583 * 10 9 7 12 12 H 1.08997 * 116.24777 * 159.67781 * 11 10 9 13 13 C 1.57087 * 99.60676 * 32.80319 * 11 10 9 14 14 C 1.49288 * 126.94499 * 173.34145 * 9 7 2 15 15 H 1.09004 * 116.15382 * 16.70476 * 14 9 7 16 16 C 1.56016 * 104.09680 * 247.55785 * 14 9 7 17 17 N 1.47874 * 105.10338 * 288.76694 * 16 14 9 18 18 C 1.34776 * 126.94746 * 182.01700 * 17 16 14 19 19 O 1.21528 * 119.99882 * 184.89433 * 18 17 16 20 20 C 1.48036 * 119.99786 * 4.90160 * 18 17 16 21 21 C 1.39561 * 119.99636 * 352.00157 * 20 18 17 22 22 C 1.37815 * 119.99214 * 179.74661 * 21 20 18 23 23 C 1.39557 * 120.00391 * 0.54868 * 22 21 20 24 24 C 1.48039 * 120.00324 * 179.72674 * 23 22 21 25 25 N 1.34781 * 119.99572 * 359.97372 * 24 23 22 26 26 O 1.21525 * 120.00309 * 179.97438 * 24 23 22 27 27 C 1.39556 * 119.99898 * 359.69984 * 23 22 21 28 28 C 1.37812 * 119.99779 * 0.02715 * 27 23 22 29 29 H 0.97006 * 119.99934 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.30826 * 300.90852 * 10 9 7 31 31 H 1.08992 * 110.31529 * 63.09665 * 10 9 7 32 32 H 1.09007 * 112.36717 * 191.71315 * 13 11 10 33 33 H 1.08996 * 112.36589 * 64.27872 * 13 11 10 34 34 H 1.09001 * 110.31471 * 47.66649 * 16 14 9 35 35 H 1.08992 * 110.32090 * 169.75816 * 16 14 9 36 36 H 1.07993 * 120.00352 * 359.97438 * 21 20 18 37 37 H 1.08005 * 119.99794 * 180.25374 * 22 21 20 38 38 H 0.97000 * 119.99913 * 0.02562 * 25 24 23 39 39 H 0.96994 * 119.99659 * 180.02562 * 25 24 23 40 40 H 1.07998 * 119.99758 * 179.97438 * 27 23 22 41 41 H 1.08008 * 119.99969 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0837 -1.2059 -0.1173 9 7 1.3336 -2.3833 0.1503 10 6 -0.1031 -2.5519 0.4570 11 6 -0.3177 -4.0935 0.5640 12 1 -1.2032 -4.4202 1.1092 13 6 1.0794 -4.5129 1.1472 14 6 1.8975 -3.7609 0.0369 15 1 2.9830 -3.8420 0.0937 16 6 1.2286 -4.3407 -1.2479 17 7 -0.1847 -4.5686 -0.8771 18 6 -1.1507 -5.0981 -1.6536 19 8 -2.2960 -5.1471 -1.2501 20 6 -0.8165 -5.6202 -2.9979 21 6 0.4577 -5.4152 -3.5291 22 6 0.7703 -5.9058 -4.7785 23 6 -0.1907 -6.5975 -5.5172 24 6 0.1433 -7.1192 -6.8617 25 7 1.3754 -6.9257 -7.3726 26 8 -0.6934 -7.7219 -7.5048 27 6 -1.4664 -6.7979 -4.9881 28 6 -1.7774 -6.3122 -3.7364 29 1 -0.4850 0.8401 0.0004 30 1 -0.3470 -2.0692 1.4034 31 1 -0.7126 -2.1398 -0.3471 32 1 1.2343 -5.5915 1.1178 33 1 1.2541 -4.1017 2.1413 34 1 1.2942 -3.6229 -2.0655 35 1 1.7033 -5.2801 -1.5308 36 1 1.1997 -4.8755 -2.9597 37 1 1.7577 -5.7508 -5.1879 38 1 2.0433 -6.4449 -6.8592 39 1 1.5941 -7.2672 -8.2537 40 1 -2.2102 -7.3328 -5.5599 41 1 -2.7648 -6.4669 -3.3271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032777984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:40 Heat of formation + Delta-G solvation = 37.127425 kcal Electronic energy + Delta-G solvation = -26071.185260 eV Core-core repulsion = 22339.646641 eV Total energy + Delta-G solvation = -3731.538619 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63983 -39.88391 -38.48988 -37.32436 -34.13855 -33.83532 -32.23240 -31.04013 -30.79750 -29.04645 -28.66062 -25.65543 -25.00154 -23.56320 -22.74667 -21.27047 -20.57450 -19.87773 -19.14901 -18.19164 -17.56353 -17.01150 -16.50795 -16.03514 -15.39118 -15.11694 -15.00290 -14.75155 -14.51844 -14.17453 -13.89206 -13.69326 -13.44941 -13.29438 -12.77117 -12.48173 -12.12386 -11.93139 -11.78268 -11.48916 -11.26855 -11.06460 -10.93132 -10.69917 -10.66534 -10.37893 -10.22224 -10.10068 -10.03073 -9.74120 -9.59490 -9.17180 -9.10960 -8.78869 -8.12694 -6.99208 -5.83938 -3.20389 0.38617 1.21766 2.41858 3.14663 3.19630 3.22575 3.32152 3.37669 3.40469 3.87277 4.35082 4.45061 4.57371 4.69503 4.76595 5.00141 5.04007 5.19238 5.24356 5.26284 5.44119 5.49480 5.55021 5.64817 5.74853 5.81825 5.95083 6.04433 6.07949 6.14586 6.22355 6.27503 6.38238 6.45215 6.47224 6.52788 6.65816 7.00346 7.24172 7.45738 7.65614 7.93999 7.94739 8.03252 8.44312 9.01258 9.63523 10.31779 11.27223 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.003568 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.635780 B = 7845.425598 C = 8661.486053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.596 5.596 10 C 0.168 3.832 11 C 0.103 3.897 12 H 0.117 0.883 13 C -0.150 4.150 14 C 0.139 3.861 15 H 0.108 0.892 16 C 0.073 3.927 17 N -0.602 5.602 18 C 0.566 3.434 19 O -0.547 6.547 20 C -0.092 4.092 21 C -0.126 4.126 22 C -0.094 4.094 23 C -0.127 4.127 24 C 0.565 3.435 25 N -0.851 5.851 26 O -0.541 6.541 27 C -0.070 4.070 28 C -0.073 4.073 29 H 0.255 0.745 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.169 0.831 37 H 0.130 0.870 38 H 0.402 0.598 39 H 0.405 0.595 40 H 0.140 0.860 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -13.311 -7.252 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.200 4.200 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.320 5.320 10 C 0.043 3.957 11 C 0.002 3.998 12 H 0.135 0.865 13 C -0.190 4.190 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.052 4.052 17 N -0.335 5.335 18 C 0.355 3.645 19 O -0.427 6.427 20 C -0.095 4.095 21 C -0.144 4.144 22 C -0.113 4.113 23 C -0.131 4.131 24 C 0.351 3.649 25 N -0.415 5.415 26 O -0.418 6.418 27 C -0.089 4.089 28 C -0.091 4.091 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.186 0.814 37 H 0.148 0.852 38 H 0.232 0.768 39 H 0.236 0.764 40 H 0.158 0.842 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.206 -13.412 -7.365 15.869 hybrid contribution 0.866 1.127 -0.327 1.459 sum 5.072 -12.285 -7.691 15.356 Atomic orbital electron populations 1.69928 1.05016 1.25444 1.55641 1.24842 0.95609 0.97827 1.01765 0.86124 0.78689 0.83515 0.77516 1.21612 1.21621 1.20543 1.19019 0.90812 0.82236 1.44384 0.90146 1.45247 1.05154 0.99251 1.82326 1.21979 0.85857 0.87276 1.00579 1.24907 0.97763 0.97693 0.79423 0.86472 1.24120 0.95890 0.99122 0.99834 1.23259 0.96688 0.86469 0.90619 0.87467 1.23679 0.81635 0.98783 1.01083 1.49794 1.09796 1.59408 1.14477 1.17877 0.84392 0.78152 0.84089 1.90740 1.19306 1.58568 1.74061 1.20282 0.94755 0.99366 0.95080 1.22748 0.97326 0.98349 0.95935 1.21245 0.98604 0.96935 0.94519 1.20030 0.95932 1.02500 0.94610 1.18370 0.82020 0.78580 0.85927 1.43760 1.14098 1.60915 1.22718 1.90806 1.48131 1.41503 1.61384 1.21205 0.95447 0.97501 0.94749 1.21284 0.99638 0.95059 0.93169 0.93510 0.93878 0.91724 0.91430 0.89438 0.90010 0.91959 0.81444 0.85230 0.76765 0.76444 0.84175 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.94 10.72 55.49 0.59 -25.34 16 2 C 0.00 -0.08 5.46 -17.43 -0.10 -0.17 16 3 Si 0.91 20.97 29.56 -169.99 -5.02 15.94 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.24 -5.98 10.36 -15.06 -0.16 -6.14 16 8 H 0.08 1.93 7.84 -52.48 -0.41 1.52 16 9 N -0.60 -13.45 3.01 -156.34 -0.47 -13.92 16 10 C 0.17 3.84 4.81 -1.67 -0.01 3.84 16 11 C 0.10 1.88 5.39 -60.78 -0.33 1.55 16 12 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 13 C -0.15 -2.31 6.84 -22.30 -0.15 -2.46 16 14 C 0.14 2.33 5.46 -62.55 -0.34 1.99 16 15 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 16 C 0.07 1.12 4.27 -1.67 -0.01 1.12 16 17 N -0.60 -10.60 3.02 -156.01 -0.47 -11.07 16 18 C 0.57 10.37 7.87 -12.24 -0.10 10.27 16 19 O -0.55 -11.62 16.82 5.34 0.09 -11.53 16 20 C -0.09 -1.38 5.88 -104.90 -0.62 -1.99 16 21 C -0.13 -1.57 8.72 -39.24 -0.34 -1.91 16 22 C -0.09 -0.96 9.53 -39.24 -0.37 -1.33 16 23 C -0.13 -1.47 5.88 -104.89 -0.62 -2.09 16 24 C 0.56 6.39 8.05 -12.24 -0.10 6.30 16 25 N -0.85 -5.85 8.82 30.57 0.27 -5.58 16 26 O -0.54 -8.09 17.17 5.34 0.09 -8.00 16 27 C -0.07 -0.88 9.58 -39.25 -0.38 -1.25 16 28 C -0.07 -1.00 9.58 -39.25 -0.38 -1.38 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 1.08 7.97 -51.93 -0.41 0.66 16 31 H 0.06 1.74 7.19 -51.93 -0.37 1.37 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.38 6.95 -51.93 -0.36 1.02 16 35 H 0.06 0.75 6.77 -51.93 -0.35 0.39 16 36 H 0.17 2.00 2.85 -53.28 -0.15 1.85 16 37 H 0.13 0.83 6.39 -52.48 -0.34 0.49 16 38 H 0.40 1.73 6.85 -40.82 -0.28 1.45 16 39 H 0.40 2.19 8.93 -40.82 -0.36 1.83 16 40 H 0.14 1.64 7.64 -52.49 -0.40 1.24 16 41 H 0.14 1.92 7.66 -52.48 -0.40 1.52 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -33.86 336.02 -8.51 -42.38 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.67 Total: 5.75 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -3.98 Total: 6.33 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.08 Total: -55.92 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.18 Total: -19.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.86 -8.51 -42.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032777984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.503 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds