Wall clock time and date at job start Tue Mar 31 2020 10:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00152 * 2 1 4 4 H 1.48497 * 109.46945 * 274.98859 * 3 2 1 5 5 H 1.48497 * 109.47071 * 34.98375 * 3 2 1 6 6 H 1.48496 * 109.47082 * 154.98622 * 3 2 1 7 7 C 1.38815 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99441 * 172.75970 * 7 2 1 9 9 N 1.36931 * 120.00095 * 352.77161 * 7 2 1 10 10 C 1.47873 * 126.94568 * 353.34036 * 9 7 2 11 11 C 1.56017 * 105.10382 * 182.00583 * 10 9 7 12 12 H 1.08997 * 116.24777 * 159.67781 * 11 10 9 13 13 C 1.57087 * 99.60676 * 32.80319 * 11 10 9 14 14 C 1.49288 * 126.94499 * 173.34145 * 9 7 2 15 15 H 1.09004 * 116.15382 * 16.70476 * 14 9 7 16 16 C 1.56016 * 104.09680 * 247.55785 * 14 9 7 17 17 N 1.47874 * 105.10338 * 288.76694 * 16 14 9 18 18 C 1.34776 * 126.94746 * 182.01700 * 17 16 14 19 19 O 1.21528 * 119.99882 * 184.89433 * 18 17 16 20 20 C 1.48036 * 119.99786 * 4.90160 * 18 17 16 21 21 C 1.39561 * 119.99636 * 352.00157 * 20 18 17 22 22 C 1.37815 * 119.99214 * 179.74661 * 21 20 18 23 23 C 1.39557 * 120.00391 * 0.54868 * 22 21 20 24 24 C 1.48039 * 120.00324 * 179.72674 * 23 22 21 25 25 N 1.34781 * 119.99572 * 359.97372 * 24 23 22 26 26 O 1.21525 * 120.00309 * 179.97438 * 24 23 22 27 27 C 1.39556 * 119.99898 * 359.69984 * 23 22 21 28 28 C 1.37812 * 119.99779 * 0.02715 * 27 23 22 29 29 H 0.97006 * 119.99934 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.30826 * 300.90852 * 10 9 7 31 31 H 1.08992 * 110.31529 * 63.09665 * 10 9 7 32 32 H 1.09007 * 112.36717 * 191.71315 * 13 11 10 33 33 H 1.08996 * 112.36589 * 64.27872 * 13 11 10 34 34 H 1.09001 * 110.31471 * 47.66649 * 16 14 9 35 35 H 1.08992 * 110.32090 * 169.75816 * 16 14 9 36 36 H 1.07993 * 120.00352 * 359.97438 * 21 20 18 37 37 H 1.08005 * 119.99794 * 180.25374 * 22 21 20 38 38 H 0.97000 * 119.99913 * 0.02562 * 25 24 23 39 39 H 0.96994 * 119.99659 * 180.02562 * 25 24 23 40 40 H 1.07998 * 119.99758 * 179.97438 * 27 23 22 41 41 H 1.08008 * 119.99969 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0837 -1.2059 -0.1173 9 7 1.3336 -2.3833 0.1503 10 6 -0.1031 -2.5519 0.4570 11 6 -0.3177 -4.0935 0.5640 12 1 -1.2032 -4.4202 1.1092 13 6 1.0794 -4.5129 1.1472 14 6 1.8975 -3.7609 0.0369 15 1 2.9830 -3.8420 0.0937 16 6 1.2286 -4.3407 -1.2479 17 7 -0.1847 -4.5686 -0.8771 18 6 -1.1507 -5.0981 -1.6536 19 8 -2.2960 -5.1471 -1.2501 20 6 -0.8165 -5.6202 -2.9979 21 6 0.4577 -5.4152 -3.5291 22 6 0.7703 -5.9058 -4.7785 23 6 -0.1907 -6.5975 -5.5172 24 6 0.1433 -7.1192 -6.8617 25 7 1.3754 -6.9257 -7.3726 26 8 -0.6934 -7.7219 -7.5048 27 6 -1.4664 -6.7979 -4.9881 28 6 -1.7774 -6.3122 -3.7364 29 1 -0.4850 0.8401 0.0004 30 1 -0.3470 -2.0692 1.4034 31 1 -0.7126 -2.1398 -0.3471 32 1 1.2343 -5.5915 1.1178 33 1 1.2541 -4.1017 2.1413 34 1 1.2942 -3.6229 -2.0655 35 1 1.7033 -5.2801 -1.5308 36 1 1.1997 -4.8755 -2.9597 37 1 1.7577 -5.7508 -5.1879 38 1 2.0433 -6.4449 -6.8592 39 1 1.5941 -7.2672 -8.2537 40 1 -2.2102 -7.3328 -5.5599 41 1 -2.7648 -6.4669 -3.3271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032777984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:40 Heat of formation + Delta-G solvation = 12.212339 kcal Electronic energy + Delta-G solvation = -26072.265659 eV Core-core repulsion = 22339.646641 eV Total energy + Delta-G solvation = -3732.619018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86677 -40.97471 -39.73047 -38.58115 -35.52125 -34.94058 -33.75045 -32.13624 -31.99266 -30.49667 -30.26023 -27.11152 -26.40750 -25.00182 -23.75440 -22.51809 -21.70209 -21.26597 -20.56667 -19.16892 -18.93203 -18.12370 -17.79949 -17.44559 -16.87233 -16.32559 -16.06518 -15.87314 -15.74090 -15.67680 -15.17159 -14.84303 -14.72901 -14.67772 -13.90820 -13.73429 -13.53548 -13.43636 -13.22441 -13.08035 -12.79708 -12.71505 -12.42580 -12.12872 -12.10362 -11.97475 -11.63888 -11.49636 -11.31328 -11.05319 -10.76735 -10.68293 -10.16462 -10.10963 -9.56986 -8.86589 -7.82589 -5.19165 -0.63629 0.26845 1.37224 1.48996 1.50467 1.59418 1.80641 2.08446 2.44482 2.50581 2.81610 3.31658 3.35026 3.48372 3.66146 3.74556 3.81163 3.88375 3.93890 4.04057 4.20051 4.23307 4.31119 4.51224 4.55896 4.61663 4.76567 4.88145 4.91367 5.03675 5.08288 5.14621 5.18006 5.21261 5.24734 5.42609 5.57270 5.66761 5.68831 5.84619 6.12199 6.36418 6.58120 7.03253 7.04871 7.23379 7.73511 8.43642 9.28029 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.003568 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.635780 B = 7845.425598 C = 8661.486053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.306 1.306 6 H -0.260 1.260 7 C -0.227 4.227 8 H 0.100 0.900 9 N -0.615 5.615 10 C 0.180 3.820 11 C 0.103 3.897 12 H 0.116 0.884 13 C -0.127 4.127 14 C 0.135 3.865 15 H 0.143 0.857 16 C 0.078 3.922 17 N -0.605 5.605 18 C 0.558 3.442 19 O -0.592 6.592 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.075 4.075 23 C -0.126 4.126 24 C 0.564 3.436 25 N -0.824 5.824 26 O -0.584 6.584 27 C -0.075 4.075 28 C -0.081 4.081 29 H 0.242 0.758 30 H 0.006 0.994 31 H 0.011 0.989 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.178 0.822 37 H 0.178 0.822 38 H 0.419 0.581 39 H 0.415 0.585 40 H 0.142 0.858 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -15.160 -8.507 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.233 1.233 6 H -0.184 1.184 7 C -0.356 4.356 8 H 0.117 0.883 9 N -0.339 5.339 10 C 0.054 3.946 11 C 0.001 3.999 12 H 0.134 0.866 13 C -0.166 4.166 14 C 0.029 3.971 15 H 0.160 0.840 16 C -0.045 4.045 17 N -0.337 5.337 18 C 0.349 3.651 19 O -0.474 6.474 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.093 4.093 23 C -0.129 4.129 24 C 0.350 3.650 25 N -0.389 5.389 26 O -0.465 6.465 27 C -0.094 4.094 28 C -0.100 4.100 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.029 0.971 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.195 0.805 37 H 0.195 0.805 38 H 0.252 0.748 39 H 0.248 0.752 40 H 0.160 0.840 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.431 -15.294 -8.631 19.481 hybrid contribution -0.358 1.645 0.006 1.684 sum 8.073 -13.649 -8.625 18.051 Atomic orbital electron populations 1.70183 1.06737 1.25015 1.58574 1.25651 0.96203 1.01215 1.03247 0.85130 0.78085 0.79561 0.76957 1.21822 1.23324 1.18439 1.19542 0.91740 0.83171 1.41121 0.88284 1.45497 1.05045 1.01219 1.82131 1.21560 0.86034 0.90309 0.96710 1.24784 1.00000 0.94238 0.80889 0.86579 1.24039 0.92349 1.01158 0.99044 1.23720 0.98687 0.83066 0.91670 0.83974 1.23707 0.80283 1.00840 0.99712 1.49862 1.10871 1.58885 1.14037 1.18479 0.83826 0.77661 0.85163 1.90704 1.21078 1.60454 1.75205 1.20127 0.96556 1.01164 0.93789 1.22822 0.96119 0.98206 0.96874 1.21641 1.00104 0.94535 0.93014 1.20211 0.95706 1.02025 0.94958 1.18338 0.82832 0.78279 0.85560 1.43560 1.12759 1.59506 1.23099 1.90800 1.49737 1.43632 1.62309 1.21255 0.96446 0.97517 0.94159 1.21220 0.99297 0.95692 0.93789 0.94909 0.97588 0.97059 0.87593 0.89512 0.91373 0.86790 0.80539 0.80474 0.74833 0.75188 0.84019 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.18 10.72 21.65 0.23 -56.95 16 2 C -0.07 -3.81 5.46 84.86 0.46 -3.35 16 3 Si 0.97 43.68 29.56 68.60 2.03 45.71 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.31 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.23 -11.31 10.36 84.04 0.87 -10.44 16 8 H 0.10 4.48 7.84 -2.91 -0.02 4.45 16 9 N -0.61 -27.45 3.01 -648.54 -1.95 -29.40 16 10 C 0.18 8.62 4.81 87.16 0.42 9.04 16 11 C 0.10 3.76 5.39 46.31 0.25 4.01 16 12 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 13 C -0.13 -3.52 6.84 33.46 0.23 -3.29 16 14 C 0.13 4.06 5.46 46.93 0.26 4.32 16 15 H 0.14 3.36 8.14 -2.38 -0.02 3.34 16 16 C 0.08 2.14 4.27 87.16 0.37 2.51 16 17 N -0.60 -20.85 3.02 -765.78 -2.31 -23.16 16 18 C 0.56 20.67 7.87 86.84 0.68 21.36 16 19 O -0.59 -26.38 16.82 -3.81 -0.06 -26.44 16 20 C -0.11 -3.32 5.88 -20.04 -0.12 -3.43 16 21 C -0.12 -2.67 8.72 22.49 0.20 -2.47 16 22 C -0.07 -1.19 9.53 22.49 0.21 -0.97 16 23 C -0.13 -2.55 5.88 -20.04 -0.12 -2.66 16 24 C 0.56 11.15 8.05 86.84 0.70 11.85 16 25 N -0.82 -7.87 8.82 -175.47 -1.55 -9.42 16 26 O -0.58 -16.61 17.17 -3.79 -0.07 -16.68 16 27 C -0.07 -1.81 9.58 22.49 0.22 -1.59 16 28 C -0.08 -2.25 9.58 22.49 0.22 -2.03 16 29 H 0.24 14.38 8.31 -92.70 -0.77 13.61 16 30 H 0.01 0.32 7.97 -2.39 -0.02 0.30 16 31 H 0.01 0.65 7.19 -2.39 -0.02 0.64 16 32 H 0.11 2.23 8.14 -2.38 -0.02 2.22 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.12 6.95 -2.39 -0.02 2.10 16 35 H 0.11 2.06 6.77 -2.39 -0.02 2.05 16 36 H 0.18 3.47 2.85 -3.65 -0.01 3.46 16 37 H 0.18 1.07 6.39 -2.91 -0.02 1.05 16 38 H 0.42 1.28 6.85 -92.71 -0.64 0.65 16 39 H 0.42 2.88 8.93 -92.71 -0.83 2.06 16 40 H 0.14 3.32 7.64 -2.91 -0.02 3.30 16 41 H 0.13 3.81 7.66 -2.91 -0.02 3.79 16 Total: -1.00 -80.53 336.02 0.81 -79.73 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -0.36 Total: 13.78 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 4.85 Total: 22.83 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -5.58 Total: -118.93 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.13 Total: -43.12 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -80.53 0.81 -79.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032777984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.938 kcal (2) G-P(sol) polarization free energy of solvation -80.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds