Wall clock time and date at job start Tue Mar 31 2020 11:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38857 * 119.41049 * 2 1 4 4 C 1.38209 * 119.71378 * 180.02562 * 3 2 1 5 5 C 1.39297 * 118.33899 * 0.02562 * 4 3 2 6 6 O 1.34583 * 133.43217 * 180.02562 * 5 4 3 7 7 C 1.34861 * 110.81968 * 179.97438 * 6 5 4 8 8 C 1.47169 * 125.13015 * 180.02562 * 7 6 5 9 9 O 1.21632 * 119.99818 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99874 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99589 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46816 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.96863 * 53.32584 * 12 11 10 14 14 C 1.53954 * 113.77191 * 185.00321 * 12 11 10 15 15 C 1.53939 * 86.29108 * 137.91041 * 14 12 11 16 16 N 1.47577 * 86.11900 * 336.39323 * 15 14 12 17 17 C 1.36939 * 134.49387 * 204.64389 * 16 15 14 18 18 H 1.08003 * 120.00086 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99946 * 0.02562 * 17 16 15 20 20 N 1.31613 * 120.00162 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00121 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47280 * 89.99478 * 21 19 17 23 23 H 1.48495 * 109.47312 * 209.99883 * 21 19 17 24 24 H 1.48500 * 109.46906 * 329.99507 * 21 19 17 25 25 C 1.35760 * 109.74047 * 0.02562 * 7 6 5 26 26 C 1.40671 * 118.77041 * 0.26851 * 5 4 3 27 27 N 1.31435 * 119.40654 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46956 * 89.99813 * 1 2 3 29 29 H 1.08996 * 109.46968 * 209.99653 * 1 2 3 30 30 H 1.08991 * 109.46708 * 329.99973 * 1 2 3 31 31 H 1.08002 * 120.14326 * 0.04483 * 3 2 1 32 32 H 1.08005 * 120.83098 * 180.02562 * 4 3 2 33 33 H 0.96997 * 120.00149 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47727 * 299.99740 * 11 10 8 35 35 H 1.09000 * 109.47451 * 60.00676 * 11 10 8 36 36 H 1.09005 * 113.73850 * 252.25874 * 14 12 11 37 37 H 1.09000 * 113.74020 * 23.44974 * 14 12 11 38 38 H 1.08996 * 113.77050 * 90.69723 * 15 14 12 39 39 H 1.09008 * 113.76891 * 221.98041 * 15 14 12 40 40 H 0.97005 * 120.00211 * 180.02562 * 20 19 17 41 41 H 1.08002 * 126.92799 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1889 1.2096 0.0000 4 6 3.5710 1.2169 -0.0005 5 6 4.2387 -0.0056 -0.0016 6 8 5.5399 -0.3491 -0.0019 7 6 5.6816 -1.6903 -0.0025 8 6 6.9675 -2.4060 -0.0025 9 8 6.9866 -3.6222 -0.0035 10 7 8.1239 -1.7139 -0.0012 11 6 9.4040 -2.4265 -0.0006 12 6 10.5512 -1.4141 0.0015 13 1 10.4727 -0.6840 0.8070 14 6 11.9453 -2.0557 -0.1206 15 6 12.2760 -0.9125 -1.0970 16 7 10.8205 -0.8174 -1.3212 17 6 10.0351 -0.3596 -2.3453 18 1 8.9592 -0.4022 -2.2614 19 6 10.6218 0.1584 -3.4918 20 7 11.9329 0.2099 -3.5943 21 14 9.5505 0.7836 -4.8885 22 1 9.2623 2.2259 -4.6839 23 1 10.2619 0.5991 -6.1788 24 1 8.2754 0.0227 -4.9131 25 6 4.4590 -2.2805 -0.0032 26 6 3.4811 -1.1908 -0.0079 27 7 2.1524 -1.1450 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8899 0.5138 31 1 1.6417 2.1407 0.0007 32 1 4.1196 2.1473 -0.0001 33 1 8.1087 -0.7441 0.0000 34 1 9.4710 -3.0526 0.8891 35 1 9.4723 -3.0516 -0.8909 36 1 12.5244 -2.0259 0.8024 37 1 11.9353 -3.0421 -0.5842 38 1 12.7046 -0.0336 -0.6154 39 1 12.8376 -1.2328 -1.9746 40 1 12.3429 0.5722 -4.3953 41 1 4.2500 -3.3401 -0.0042 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038948416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:40 Heat of formation + Delta-G solvation = 60.579084 kcal Electronic energy + Delta-G solvation = -25313.477922 eV Core-core repulsion = 21582.956243 eV Total energy + Delta-G solvation = -3730.521679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.84780 -39.72902 -39.07966 -37.95102 -34.38474 -33.44540 -32.69940 -32.22307 -31.02150 -28.72706 -27.94244 -27.29570 -24.49076 -23.40889 -22.67441 -22.46083 -21.64248 -20.75705 -19.35786 -18.51370 -17.78259 -16.74743 -16.68511 -16.11827 -15.88293 -15.64139 -15.33141 -14.67775 -14.45178 -14.29573 -14.02228 -13.79983 -13.38223 -13.31831 -13.22842 -13.02988 -12.75002 -12.52661 -12.48711 -11.99088 -11.48182 -11.18739 -11.06826 -10.79552 -10.76099 -10.63653 -10.36127 -9.92958 -9.78862 -9.73678 -9.49977 -9.11485 -8.95742 -8.83509 -8.67998 -6.94103 -5.80326 -3.13189 0.26361 0.83857 1.60361 2.20645 3.06443 3.16548 3.35444 3.41655 3.42357 3.42827 3.80149 4.18820 4.32803 4.39761 4.53215 4.71855 4.92058 5.00735 5.08470 5.19843 5.27677 5.33018 5.37873 5.52070 5.55802 5.60387 5.63170 5.68312 5.84806 5.94093 5.97091 6.08433 6.23051 6.33853 6.50229 6.58185 6.64381 6.74094 7.20695 7.35856 7.55454 7.59299 7.61283 7.94473 8.15454 9.00459 9.67237 10.54467 11.36253 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.003505 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.895927 B = 7987.009025 C = 9292.614570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 C -0.144 4.144 4 C -0.054 4.054 5 C 0.011 3.989 6 O -0.173 6.173 7 C 0.008 3.992 8 C 0.593 3.407 9 O -0.519 6.519 10 N -0.694 5.694 11 C 0.120 3.880 12 C 0.125 3.875 13 H 0.051 0.949 14 C -0.154 4.154 15 C 0.159 3.841 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.281 1.281 25 C -0.115 4.115 26 C 0.071 3.929 27 N -0.442 5.442 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.254 0.746 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 1.241 10.319 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.020 4.020 3 C -0.164 4.164 4 C -0.081 4.081 5 C -0.039 4.039 6 O -0.073 6.073 7 C -0.045 4.045 8 C 0.377 3.623 9 O -0.397 6.397 10 N -0.343 5.343 11 C -0.004 4.004 12 C 0.017 3.983 13 H 0.069 0.931 14 C -0.193 4.193 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.207 1.207 25 C -0.136 4.136 26 C -0.059 4.059 27 N -0.152 5.152 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.718 -0.116 9.984 19.473 hybrid contribution -0.143 1.809 -0.885 2.019 sum -16.861 1.693 9.099 19.234 Atomic orbital electron populations 1.20702 0.88019 1.03693 1.03370 1.21331 0.97222 0.87470 0.96013 1.21855 0.93057 0.99824 1.01664 1.20522 0.93490 0.95037 0.99027 1.20562 0.82510 0.96877 1.03985 1.84056 1.24765 1.22805 1.75685 1.22342 0.96394 0.80116 1.05605 1.16637 0.81284 0.86258 0.78167 1.90872 1.85931 1.11665 1.51225 1.45938 1.05545 1.11248 1.71570 1.21957 0.80828 0.95564 1.02039 1.22524 0.92513 0.92923 0.90361 0.93138 1.23775 0.95576 1.00340 0.99653 1.22200 0.86954 0.92175 0.95313 1.46097 1.02468 1.72592 1.11733 1.18935 0.89145 1.34070 0.92758 0.90431 1.24745 0.95783 1.01484 0.98167 1.69812 1.07828 1.50692 1.28217 0.86213 0.79391 0.78707 0.82055 1.21616 1.21533 1.20689 1.22446 0.88129 0.99860 1.03176 1.20594 0.90279 0.92160 1.02829 1.66842 1.07120 1.29608 1.11674 0.90164 0.90282 0.90398 0.83193 0.83295 0.75460 0.91438 0.90268 0.92688 0.90382 0.95520 0.90752 0.93636 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.16 36.01 0.37 -0.29 16 2 C 0.13 1.30 6.78 -82.53 -0.56 0.74 16 3 C -0.14 -1.26 9.71 -39.36 -0.38 -1.64 16 4 C -0.05 -0.57 10.19 -39.20 -0.40 -0.97 16 5 C 0.01 0.16 7.42 -38.27 -0.28 -0.13 16 6 O -0.17 -2.63 10.28 3.39 0.03 -2.59 16 7 C 0.01 0.12 7.07 -36.84 -0.26 -0.14 16 8 C 0.59 10.18 7.80 -12.64 -0.10 10.08 16 9 O -0.52 -9.97 16.83 5.25 0.09 -9.88 16 10 N -0.69 -11.77 5.52 -61.46 -0.34 -12.11 16 11 C 0.12 2.09 5.54 -4.04 -0.02 2.06 16 12 C 0.12 2.32 4.33 -66.86 -0.29 2.03 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.15 -2.72 7.86 -25.80 -0.20 -2.93 16 15 C 0.16 3.57 7.51 -2.98 -0.02 3.55 16 16 N -0.60 -14.46 3.57 -170.76 -0.61 -15.07 16 17 C -0.22 -5.92 10.51 -15.06 -0.16 -6.08 16 18 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -26.78 11.39 55.49 0.63 -26.14 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 C -0.11 -1.68 10.81 -37.18 -0.40 -2.09 16 26 C 0.07 1.03 7.52 -83.17 -0.63 0.41 16 27 N -0.44 -5.99 10.32 -6.13 -0.06 -6.05 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.41 6.80 8.19 -40.82 -0.33 6.46 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.87 7.16 -51.92 -0.37 1.49 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -32.85 356.30 -8.67 -41.52 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.32 Total: 3.52 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -3.44 Total: 4.37 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.38 Total: -59.38 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.12 Total: -12.48 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.85 -8.67 -41.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038948416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.098 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds