Wall clock time and date at job start Tue Mar 31 2020 10:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99889 * 2 1 4 4 H 1.48496 * 109.47277 * 275.00025 * 3 2 1 5 5 H 1.48497 * 109.47036 * 35.00425 * 3 2 1 6 6 H 1.48508 * 109.47027 * 155.00093 * 3 2 1 7 7 C 1.38811 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00603 * 174.81496 * 7 2 1 9 9 N 1.36942 * 119.99678 * 354.81605 * 7 2 1 10 10 C 1.46637 * 125.32548 * 5.04272 * 9 7 2 11 11 C 1.53703 * 108.00753 * 180.81934 * 10 9 7 12 12 H 1.08999 * 113.05016 * 253.80836 * 11 10 9 13 13 C 1.53720 * 109.34121 * 127.55547 * 11 10 9 14 14 N 1.46670 * 107.94225 * 266.25110 * 13 11 10 15 15 C 1.34778 * 125.33465 * 180.55131 * 14 13 11 16 16 O 1.21735 * 119.99502 * 184.76238 * 15 14 13 17 17 C 1.46489 * 120.00424 * 4.75287 * 15 14 13 18 18 C 1.37776 * 125.85895 * 174.06789 * 17 15 14 19 19 C 1.39932 * 107.68876 * 179.88087 * 18 17 15 20 20 O 1.35122 * 145.14781 * 179.97438 * 19 18 17 21 21 C 1.34373 * 109.62908 * 180.34012 * 20 19 18 22 22 C 1.34458 * 109.44872 * 0.02562 * 21 20 19 23 23 C 1.39138 * 107.40164 * 0.33315 * 19 18 17 24 24 N 1.37104 * 108.11347 * 359.79402 * 23 19 18 25 25 H 0.96996 * 125.74785 * 179.97438 * 24 23 19 26 26 C 1.46771 * 109.32453 * 0.80840 * 14 13 11 27 27 C 1.54165 * 106.52645 * 341.09398 * 26 14 13 28 28 H 1.08995 * 113.82836 * 265.67618 * 27 26 14 29 29 C 1.46743 * 125.33198 * 185.02027 * 9 7 2 30 30 H 0.97004 * 119.99999 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.76505 * 61.17811 * 10 9 7 32 32 H 1.08999 * 109.76795 * 300.45320 * 10 9 7 33 33 H 1.09007 * 109.76940 * 146.63368 * 13 11 10 34 34 H 1.08994 * 109.77366 * 25.87382 * 13 11 10 35 35 H 1.08001 * 126.16114 * 359.91017 * 18 17 15 36 36 H 1.08004 * 125.27619 * 180.02562 * 21 20 19 37 37 H 1.08007 * 126.41780 * 179.97438 * 22 21 20 38 38 H 1.09009 * 110.02696 * 100.51006 * 26 14 13 39 39 H 1.08995 * 110.03180 * 221.92604 * 26 14 13 40 40 H 1.09004 * 110.00958 * 42.36185 * 29 9 7 41 41 H 1.09000 * 110.00876 * 280.99426 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5045 2.6198 0.8031 6 1 3.5966 1.4120 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2040 -0.0851 9 7 1.3298 -2.3857 0.1061 10 6 -0.1297 -2.5262 0.1215 11 6 -0.4618 -4.0189 0.2759 12 1 -0.8277 -4.4723 -0.6454 13 6 -1.4343 -4.2052 1.4517 14 7 -0.6425 -4.5000 2.6506 15 6 -1.1457 -4.7355 3.8786 16 8 -0.3952 -4.8850 4.8253 17 6 -2.5955 -4.8112 4.0741 18 6 -3.2351 -5.1574 5.2442 19 6 -4.6132 -5.1045 5.0072 20 8 -5.8389 -5.2759 5.5493 21 6 -6.7807 -5.0261 4.6240 22 6 -6.1903 -4.6887 3.4641 23 6 -4.7929 -4.7300 3.6793 24 7 -3.5560 -4.5525 3.1152 25 1 -3.3840 -4.2899 2.1975 26 6 0.7838 -4.4923 2.3047 27 6 0.8647 -4.6573 0.7740 28 1 0.9944 -5.6894 0.4486 29 6 1.9470 -3.7119 0.2224 30 1 -0.4850 0.8401 0.0004 31 1 -0.5460 -2.1508 -0.8133 32 1 -0.5450 -1.9677 0.9604 33 1 -2.1104 -5.0344 1.2432 34 1 -2.0078 -3.2909 1.6042 35 1 -2.7587 -5.4215 6.1768 36 1 -7.8467 -5.0870 4.7867 37 1 -6.6896 -4.4339 2.5408 38 1 1.2358 -3.5470 2.6054 39 1 1.2916 -5.3223 2.7959 40 1 2.7921 -3.6711 0.9096 41 1 2.2788 -4.0561 -0.7572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048851013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:01 Heat of formation + Delta-G solvation = 75.126346 kcal Electronic energy + Delta-G solvation = -26299.281855 eV Core-core repulsion = 22569.390993 eV Total energy + Delta-G solvation = -3729.890862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.01617 -40.61016 -39.19950 -37.93865 -35.14992 -32.54646 -32.39771 -30.87581 -30.31424 -29.77286 -28.32687 -25.77884 -25.75942 -23.86040 -22.47953 -21.43952 -20.78225 -20.22455 -19.65663 -19.55773 -17.78886 -17.36070 -16.84448 -16.40118 -16.02757 -15.62253 -15.36207 -14.91155 -14.50617 -14.15528 -13.87777 -13.60038 -13.48965 -13.34740 -12.98267 -12.81844 -12.80299 -12.25740 -12.06281 -11.82377 -11.56204 -11.53976 -10.99517 -10.86444 -10.59565 -10.25084 -10.19483 -10.18648 -10.05666 -9.94558 -9.75416 -8.69975 -8.67712 -8.56462 -7.93046 -6.92796 -5.82501 -3.15045 0.93425 2.14560 2.43047 2.58664 2.72942 3.21693 3.33555 3.35346 3.41793 3.43318 4.38643 4.42902 4.47543 4.62302 4.77936 4.93106 5.04930 5.16816 5.22762 5.35629 5.39970 5.42287 5.51016 5.53165 5.62354 5.70230 5.89750 5.98739 6.02551 6.07978 6.21061 6.23343 6.27245 6.46645 6.53926 6.60852 6.71147 7.04665 7.22057 7.38183 7.45374 7.54019 7.69911 8.12886 8.16724 9.12831 9.73473 10.36229 11.29717 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.003506 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.984890 B = 7983.854027 C = 8611.299987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.120 4.120 12 H 0.094 0.906 13 C 0.098 3.902 14 N -0.604 5.604 15 C 0.601 3.399 16 O -0.526 6.526 17 C 0.018 3.982 18 C -0.085 4.085 19 C -0.040 4.040 20 O -0.170 6.170 21 C 0.007 3.993 22 C -0.200 4.200 23 C 0.006 3.994 24 N -0.532 5.532 25 H 0.424 0.576 26 C 0.122 3.878 27 C -0.111 4.111 28 H 0.092 0.908 29 C 0.145 3.855 30 H 0.253 0.747 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.211 0.789 37 H 0.154 0.846 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -12.335 3.925 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.059 3.941 11 C -0.140 4.140 12 H 0.113 0.887 13 C -0.025 4.025 14 N -0.337 5.337 15 C 0.390 3.610 16 O -0.403 6.403 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.092 4.092 20 O -0.068 6.068 21 C -0.061 4.061 22 C -0.222 4.222 23 C -0.108 4.108 24 N -0.141 5.141 25 H 0.268 0.732 26 C 0.000 4.000 27 C -0.130 4.130 28 H 0.110 0.890 29 C 0.018 3.982 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.178 0.822 36 H 0.228 0.772 37 H 0.171 0.829 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.177 -12.223 4.641 17.200 hybrid contribution 0.188 1.185 -0.816 1.451 sum -10.989 -11.038 3.825 16.038 Atomic orbital electron populations 1.69932 1.04968 1.25160 1.56892 1.24806 0.95719 0.97764 1.01850 0.86106 0.78782 0.83449 0.77480 1.21621 1.21624 1.20530 1.19047 0.90921 0.82284 1.43581 0.90253 1.44181 1.01280 1.00809 1.86547 1.21135 0.85088 0.86502 1.01416 1.23135 0.93750 1.01336 0.95799 0.88729 1.22183 0.95039 0.99495 0.85798 1.48124 1.08953 1.68992 1.07610 1.16428 0.85090 0.77588 0.81907 1.90866 1.58559 1.51401 1.39495 1.20243 0.88734 1.11665 0.88879 1.19827 0.86217 1.06976 0.98237 1.19278 0.86787 1.11344 0.91774 1.84007 1.12494 1.72618 1.37649 1.24011 0.94199 1.01640 0.86239 1.20576 0.88972 1.11836 1.00772 1.19099 0.88146 1.09241 0.94266 1.42003 1.02880 1.56323 1.12916 0.73179 1.22065 0.80324 1.02839 0.94735 1.22985 0.96894 0.99415 0.93754 0.88986 1.21186 0.93864 0.85926 0.97232 0.93712 0.93865 0.92806 0.92219 0.90739 0.82241 0.77244 0.82874 0.89933 0.91015 0.94065 0.96053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.01 10.28 55.49 0.57 -25.44 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.16 10.24 -15.06 -0.15 -6.31 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.35 3.37 -171.93 -0.58 -14.93 16 10 C 0.18 4.03 4.76 -3.60 -0.02 4.01 16 11 C -0.12 -1.92 4.02 -88.60 -0.36 -2.28 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.10 1.40 4.50 -3.58 -0.02 1.38 16 14 N -0.60 -9.78 3.31 -173.77 -0.58 -10.36 16 15 C 0.60 10.27 7.79 -12.94 -0.10 10.17 16 16 O -0.53 -10.38 17.18 5.16 0.09 -10.29 16 17 C 0.02 0.27 6.86 -81.86 -0.56 -0.29 16 18 C -0.08 -1.23 10.59 -39.12 -0.41 -1.65 16 19 C -0.04 -0.56 8.20 -38.61 -0.32 -0.88 16 20 O -0.17 -2.09 10.68 3.22 0.03 -2.06 16 21 C 0.01 0.06 12.02 29.40 0.35 0.41 16 22 C -0.20 -2.00 10.89 -39.70 -0.43 -2.43 16 23 C 0.01 0.08 8.11 -83.95 -0.68 -0.60 16 24 N -0.53 -7.04 5.65 -7.04 -0.04 -7.08 16 25 H 0.42 4.92 4.89 -40.82 -0.20 4.72 16 26 C 0.12 2.03 6.09 -3.29 -0.02 2.01 16 27 C -0.11 -1.72 4.19 -88.25 -0.37 -2.09 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 C 0.14 2.74 6.37 -3.43 -0.02 2.71 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 32 H 0.05 1.34 6.37 -51.93 -0.33 1.01 16 33 H 0.06 0.68 6.99 -51.93 -0.36 0.32 16 34 H 0.07 1.11 6.53 -51.93 -0.34 0.77 16 35 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.21 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.08 1.63 7.72 -51.92 -0.40 1.23 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.77 7.95 -51.93 -0.41 0.36 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -32.62 332.35 -8.67 -41.28 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.95 Total: 3.26 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -3.20 Total: 3.94 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.62 Total: -57.80 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.12 Total: -12.35 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.62 -8.67 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048851013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.411 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds