Wall clock time and date at job start Tue Mar 31 2020 10:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47166 * 239.99774 * 3 2 1 5 5 H 1.48493 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47135 * 120.00089 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 13 13 O 1.42900 * 111.00699 * 204.82077 * 11 10 9 14 14 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 15 15 H 1.08997 * 110.72022 * 277.13434 * 14 11 10 16 16 N 1.46497 * 110.72021 * 153.86481 * 14 11 10 17 17 C 1.34781 * 119.99953 * 155.00094 * 16 14 11 18 18 O 1.21771 * 120.00048 * 359.97438 * 17 16 14 19 19 C 1.46211 * 119.99882 * 180.02562 * 17 16 14 20 20 C 1.41732 * 126.80211 * 0.02562 * 19 17 16 21 21 C 1.34519 * 107.78100 * 179.97438 * 20 19 17 22 22 N 1.36959 * 109.59986 * 359.97438 * 21 20 19 23 23 C 1.36705 * 131.34559 * 179.97438 * 22 21 20 24 24 C 1.35005 * 120.74829 * 179.97438 * 23 22 21 25 25 C 1.40301 * 120.38299 * 0.02608 * 24 23 22 26 26 C 1.36344 * 119.45746 * 359.97438 * 25 24 23 27 27 C 1.36943 * 108.74079 * 359.76424 * 22 21 20 28 28 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 29 29 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 31 31 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 32 32 H 0.96696 * 113.99718 * 298.55179 * 13 11 10 33 33 H 0.96996 * 120.00123 * 334.99768 * 16 14 11 34 34 H 1.08008 * 126.10853 * 359.94400 * 20 19 17 35 35 H 1.08000 * 125.20022 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.62500 * 0.02849 * 23 22 21 37 37 H 1.08000 * 119.80309 * 180.02562 * 24 23 22 38 38 H 1.07999 * 120.26832 * 179.97438 * 25 24 23 39 39 H 1.08003 * 120.33618 * 179.97438 * 26 25 24 40 40 H 1.09004 * 109.85762 * 59.49821 * 28 9 7 41 41 H 1.08995 * 110.00297 * 298.42768 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 1 -0.3558 -3.8977 1.6973 13 8 -1.6610 -4.4539 0.1716 14 6 0.7740 -4.7541 0.0247 15 1 0.5415 -5.0993 -0.9827 16 7 1.1013 -5.8836 0.8984 17 6 1.7020 -6.9774 0.3893 18 8 1.9722 -7.0272 -0.7970 19 6 2.0282 -8.1049 1.2613 20 6 1.7793 -8.2014 2.6532 21 6 2.2318 -9.3979 3.0694 22 7 2.7629 -10.0825 2.0088 23 6 3.3383 -11.3200 1.9295 24 6 3.7980 -11.7934 0.7517 25 6 3.6926 -11.0195 -0.4138 26 6 3.1208 -9.7835 -0.3485 27 6 2.6448 -9.3110 0.8835 28 6 1.9294 -3.7314 -0.0017 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5266 -2.4860 -1.0215 31 1 -0.5999 -1.7581 0.6114 32 1 -2.4220 -3.9168 0.4312 33 1 0.8858 -5.8441 1.8433 34 1 1.3105 -7.4486 3.2697 35 1 2.1836 -9.7629 4.0847 36 1 3.4253 -11.9263 2.8191 37 1 4.2496 -12.7734 0.7066 38 1 4.0614 -11.3998 -1.3549 39 1 3.0328 -9.1756 -1.2369 40 1 2.5552 -3.8562 0.8821 41 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077362224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:33 Heat of formation + Delta-G solvation = 28.274290 kcal Electronic energy + Delta-G solvation = -25558.990757 eV Core-core repulsion = 21827.068237 eV Total energy + Delta-G solvation = -3731.922520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.43676 -39.30345 -37.62128 -36.73430 -34.98856 -33.86518 -33.13475 -31.66380 -30.20527 -28.71904 -27.90793 -26.79340 -24.56501 -23.87177 -23.03268 -21.64379 -20.61614 -20.15116 -19.71759 -18.05102 -17.10505 -16.76907 -16.61095 -16.09832 -15.71730 -15.68790 -15.45907 -14.74299 -14.55220 -14.25055 -13.97931 -13.72036 -13.33894 -13.10233 -12.91991 -12.78718 -12.25260 -12.07656 -11.84973 -11.80680 -11.56549 -11.37627 -11.20549 -10.97870 -10.79273 -10.50182 -10.18290 -9.87686 -9.68832 -9.61610 -9.22510 -8.89910 -8.68301 -8.61376 -7.53046 -6.87940 -5.68586 -3.10700 0.53424 1.02759 2.27059 2.40837 3.15643 3.40641 3.44725 3.45937 3.61403 3.83388 4.21911 4.44887 4.52772 4.58859 4.68604 4.71683 4.87903 5.02256 5.24281 5.39075 5.45616 5.48245 5.58872 5.61278 5.72619 5.74483 5.93588 5.96373 6.06736 6.13502 6.19869 6.27037 6.51506 6.61875 6.66291 6.75770 6.98607 7.08358 7.36124 7.56144 7.73799 7.94801 8.16538 8.29805 8.66067 9.17537 9.77893 10.41386 11.35578 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.002800 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.675279 B = 9997.750725 C =10316.848019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.128 3.872 11 C 0.067 3.933 12 H 0.061 0.939 13 O -0.566 6.566 14 C 0.144 3.856 15 H 0.102 0.898 16 N -0.710 5.710 17 C 0.591 3.409 18 O -0.554 6.554 19 C -0.232 4.232 20 C -0.105 4.105 21 C -0.066 4.066 22 N -0.339 5.339 23 C 0.044 3.956 24 C -0.142 4.142 25 C -0.123 4.123 26 C -0.076 4.076 27 C 0.109 3.891 28 C 0.129 3.871 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.113 0.887 32 H 0.377 0.623 33 H 0.396 0.604 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.031 0.969 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -23.194 7.426 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.002 3.998 11 C 0.006 3.994 12 H 0.079 0.921 13 O -0.371 6.371 14 C 0.039 3.961 15 H 0.120 0.880 16 N -0.359 5.359 17 C 0.380 3.620 18 O -0.434 6.434 19 C -0.242 4.242 20 C -0.127 4.127 21 C -0.191 4.191 22 N -0.003 5.003 23 C -0.077 4.077 24 C -0.162 4.162 25 C -0.144 4.144 26 C -0.094 4.094 27 C 0.000 4.000 28 C 0.002 3.998 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.130 0.870 32 H 0.223 0.777 33 H 0.231 0.769 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.180 0.820 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.175 0.825 40 H 0.049 0.951 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.817 -23.650 6.462 24.813 hybrid contribution 0.056 1.217 0.810 1.463 sum 3.873 -22.433 7.273 23.898 Atomic orbital electron populations 1.69727 1.04924 1.25011 1.57759 1.24793 0.95780 0.97781 1.02340 0.86097 0.78370 0.82757 0.77954 1.21135 1.21546 1.21125 1.19069 0.90599 0.82161 1.43051 0.90263 1.44341 1.01474 0.99778 1.87215 1.22567 0.85661 0.92035 0.99490 1.23644 0.82682 0.96090 0.96950 0.92135 1.86418 1.15993 1.53324 1.81321 1.21960 0.93868 0.85040 0.95193 0.88038 1.45687 1.61442 1.16556 1.12240 1.16975 0.76986 0.81292 0.86754 1.90768 1.54672 1.81776 1.16157 1.19434 1.14549 0.95778 0.94414 1.21070 1.00947 0.96718 0.93934 1.21656 1.10341 0.94910 0.92219 1.41524 1.37840 1.11869 1.09081 1.21659 0.99694 0.85681 1.00659 1.20778 1.02390 1.01457 0.91597 1.21129 1.00142 0.94268 0.98877 1.20949 0.96055 0.96098 0.96332 1.18647 1.02709 0.91689 0.86959 1.21695 0.93841 0.85244 0.99042 0.93589 0.95723 0.86988 0.77651 0.76949 0.82862 0.81018 0.82033 0.83584 0.84478 0.82530 0.95119 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.63 10.09 55.49 0.56 -26.07 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.67 3.40 -169.86 -0.58 -16.25 16 10 C 0.13 3.11 5.62 -2.53 -0.01 3.10 16 11 C 0.07 1.30 4.06 -24.58 -0.10 1.20 16 12 H 0.06 1.10 8.01 -51.92 -0.42 0.68 16 13 O -0.57 -10.14 13.47 -35.23 -0.47 -10.62 16 14 C 0.14 2.89 3.05 -66.10 -0.20 2.69 16 15 H 0.10 2.25 7.55 -51.93 -0.39 1.86 16 16 N -0.71 -11.97 5.09 -53.47 -0.27 -12.24 16 17 C 0.59 10.49 7.77 -13.06 -0.10 10.39 16 18 O -0.55 -11.55 15.30 5.13 0.08 -11.47 16 19 C -0.23 -3.43 6.20 -104.46 -0.65 -4.07 16 20 C -0.11 -1.19 10.27 -39.56 -0.41 -1.59 16 21 C -0.07 -0.64 11.53 -16.58 -0.19 -0.83 16 22 N -0.34 -3.63 2.92 -60.81 -0.18 -3.81 16 23 C 0.04 0.34 10.89 -16.53 -0.18 0.15 16 24 C -0.14 -1.00 9.98 -39.96 -0.40 -1.40 16 25 C -0.12 -1.10 10.09 -39.49 -0.40 -1.50 16 26 C -0.08 -0.94 9.72 -39.50 -0.38 -1.32 16 27 C 0.11 1.49 6.70 -83.91 -0.56 0.93 16 28 C 0.13 2.91 7.01 -2.92 -0.02 2.89 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.11 2.95 5.86 -51.93 -0.30 2.64 16 32 H 0.38 5.20 9.11 45.56 0.42 5.62 16 33 H 0.40 5.56 7.53 -40.82 -0.31 5.25 16 34 H 0.15 1.35 7.53 -52.48 -0.40 0.95 16 35 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.16 2.12 7.07 -52.48 -0.37 1.75 16 40 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -35.38 345.14 -8.81 -44.19 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.27 Total: 10.17 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.86 Total: 3.84 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.47 Total: -58.37 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.40 Total: -22.09 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.38 -8.81 -44.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077362224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.464 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds