Wall clock time and date at job start Tue Mar 31 2020 10:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47166 * 239.99774 * 3 2 1 5 5 H 1.48493 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47135 * 120.00089 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 13 13 O 1.42900 * 111.00699 * 204.82077 * 11 10 9 14 14 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 15 15 H 1.08997 * 110.72022 * 277.13434 * 14 11 10 16 16 N 1.46497 * 110.72021 * 153.86481 * 14 11 10 17 17 C 1.34781 * 119.99953 * 155.00094 * 16 14 11 18 18 O 1.21771 * 120.00048 * 359.97438 * 17 16 14 19 19 C 1.46211 * 119.99882 * 180.02562 * 17 16 14 20 20 C 1.41732 * 126.80211 * 0.02562 * 19 17 16 21 21 C 1.34519 * 107.78100 * 179.97438 * 20 19 17 22 22 N 1.36959 * 109.59986 * 359.97438 * 21 20 19 23 23 C 1.36705 * 131.34559 * 179.97438 * 22 21 20 24 24 C 1.35005 * 120.74829 * 179.97438 * 23 22 21 25 25 C 1.40301 * 120.38299 * 0.02608 * 24 23 22 26 26 C 1.36344 * 119.45746 * 359.97438 * 25 24 23 27 27 C 1.36943 * 108.74079 * 359.76424 * 22 21 20 28 28 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 29 29 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 31 31 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 32 32 H 0.96696 * 113.99718 * 298.55179 * 13 11 10 33 33 H 0.96996 * 120.00123 * 334.99768 * 16 14 11 34 34 H 1.08008 * 126.10853 * 359.94400 * 20 19 17 35 35 H 1.08000 * 125.20022 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.62500 * 0.02849 * 23 22 21 37 37 H 1.08000 * 119.80309 * 180.02562 * 24 23 22 38 38 H 1.07999 * 120.26832 * 179.97438 * 25 24 23 39 39 H 1.08003 * 120.33618 * 179.97438 * 26 25 24 40 40 H 1.09004 * 109.85762 * 59.49821 * 28 9 7 41 41 H 1.08995 * 110.00297 * 298.42768 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 1 -0.3558 -3.8977 1.6973 13 8 -1.6610 -4.4539 0.1716 14 6 0.7740 -4.7541 0.0247 15 1 0.5415 -5.0993 -0.9827 16 7 1.1013 -5.8836 0.8984 17 6 1.7020 -6.9774 0.3893 18 8 1.9722 -7.0272 -0.7970 19 6 2.0282 -8.1049 1.2613 20 6 1.7793 -8.2014 2.6532 21 6 2.2318 -9.3979 3.0694 22 7 2.7629 -10.0825 2.0088 23 6 3.3383 -11.3200 1.9295 24 6 3.7980 -11.7934 0.7517 25 6 3.6926 -11.0195 -0.4138 26 6 3.1208 -9.7835 -0.3485 27 6 2.6448 -9.3110 0.8835 28 6 1.9294 -3.7314 -0.0017 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5266 -2.4860 -1.0215 31 1 -0.5999 -1.7581 0.6114 32 1 -2.4220 -3.9168 0.4312 33 1 0.8858 -5.8441 1.8433 34 1 1.3105 -7.4486 3.2697 35 1 2.1836 -9.7629 4.0847 36 1 3.4253 -11.9263 2.8191 37 1 4.2496 -12.7734 0.7066 38 1 4.0614 -11.3998 -1.3549 39 1 3.0328 -9.1756 -1.2369 40 1 2.5552 -3.8562 0.8821 41 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077362224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:33 Heat of formation + Delta-G solvation = 2.004962 kcal Electronic energy + Delta-G solvation = -25560.129880 eV Core-core repulsion = 21827.068237 eV Total energy + Delta-G solvation = -3733.061643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.22629 -40.78922 -39.21471 -37.49764 -36.68339 -35.49935 -34.01537 -33.53306 -31.04312 -30.27933 -29.23422 -28.38547 -26.41973 -24.62652 -24.21518 -22.50060 -22.35482 -21.73852 -21.04466 -19.19427 -18.81923 -18.29346 -17.62188 -17.19370 -17.01666 -16.61719 -16.55635 -16.28292 -15.79159 -15.53362 -15.29554 -15.26308 -14.86442 -14.59980 -14.05338 -14.00799 -13.74888 -13.58916 -13.20796 -13.09637 -12.85552 -12.81500 -12.69739 -12.52112 -12.26344 -12.09890 -11.92642 -11.42340 -11.37131 -11.18025 -10.84108 -10.76137 -10.14484 -9.64267 -8.98539 -8.35401 -7.82002 -5.28732 -0.23731 0.25748 1.33894 1.47091 1.50783 1.57059 1.65391 2.26737 2.34936 2.48427 2.71647 3.07716 3.29139 3.59208 3.63841 3.80909 3.86199 3.96277 4.01721 4.03936 4.12237 4.20034 4.27619 4.41696 4.49766 4.58967 4.77886 4.83122 4.85095 4.91449 5.00668 5.24170 5.31867 5.36759 5.37572 5.42678 5.50521 5.65859 5.68157 5.86209 6.20008 6.31945 6.66032 6.86068 7.04084 7.34150 7.67465 8.31134 9.19700 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.002800 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.675279 B = 9997.750725 C =10316.848019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.986 3.014 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.080 0.920 9 N -0.618 5.618 10 C 0.134 3.866 11 C 0.092 3.908 12 H 0.087 0.913 13 O -0.568 6.568 14 C 0.158 3.842 15 H 0.074 0.926 16 N -0.699 5.699 17 C 0.585 3.415 18 O -0.600 6.600 19 C -0.285 4.285 20 C -0.112 4.112 21 C -0.056 4.056 22 N -0.341 5.341 23 C 0.052 3.948 24 C -0.147 4.147 25 C -0.095 4.095 26 C -0.132 4.132 27 C 0.096 3.904 28 C 0.132 3.868 29 H 0.251 0.749 30 H -0.008 1.008 31 H 0.094 0.906 32 H 0.397 0.603 33 H 0.412 0.588 34 H 0.174 0.826 35 H 0.217 0.783 36 H 0.210 0.790 37 H 0.190 0.810 38 H 0.160 0.840 39 H 0.126 0.874 40 H 0.040 0.960 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -26.072 10.312 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.813 3.187 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.008 3.992 11 C 0.032 3.968 12 H 0.105 0.895 13 O -0.376 6.376 14 C 0.051 3.949 15 H 0.092 0.908 16 N -0.350 5.350 17 C 0.378 3.622 18 O -0.484 6.484 19 C -0.294 4.294 20 C -0.132 4.132 21 C -0.180 4.180 22 N -0.005 5.005 23 C -0.069 4.069 24 C -0.166 4.166 25 C -0.116 4.116 26 C -0.151 4.151 27 C -0.015 4.015 28 C 0.005 3.995 29 H 0.061 0.939 30 H 0.010 0.990 31 H 0.112 0.888 32 H 0.247 0.753 33 H 0.249 0.751 34 H 0.191 0.809 35 H 0.234 0.766 36 H 0.227 0.773 37 H 0.208 0.792 38 H 0.178 0.822 39 H 0.144 0.856 40 H 0.058 0.942 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 4.728 -26.546 9.404 28.556 hybrid contribution -0.164 1.893 -0.133 1.905 sum 4.564 -24.652 9.271 26.730 Atomic orbital electron populations 1.69946 1.06114 1.25525 1.57984 1.25653 0.96775 1.00945 1.02003 0.85052 0.77143 0.78310 0.78182 1.20864 1.21449 1.19883 1.19417 0.91063 0.83378 1.43648 0.90214 1.44597 1.02402 1.00458 1.87153 1.22395 0.84691 0.94559 0.97574 1.23271 0.83195 0.92655 0.97717 0.89534 1.86392 1.16100 1.53532 1.81577 1.21495 0.93200 0.85384 0.94776 0.90817 1.45449 1.61510 1.15475 1.12555 1.17551 0.76022 0.81989 0.86673 1.90728 1.56662 1.82677 1.18315 1.19272 1.18538 0.95760 0.95846 1.21368 1.01200 0.98256 0.92418 1.22320 1.08299 0.93941 0.93403 1.41832 1.37692 1.12651 1.08311 1.22617 0.97173 0.84365 1.02732 1.21324 1.02028 1.02832 0.90406 1.21566 0.96521 0.92510 1.00991 1.20840 1.00510 0.98135 0.95611 1.18774 1.02397 0.92007 0.88280 1.21713 0.94706 0.84760 0.98302 0.93886 0.99041 0.88844 0.75311 0.75074 0.80914 0.76623 0.77307 0.79239 0.82210 0.85579 0.94220 0.96918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.73 10.09 21.65 0.22 -55.51 16 2 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 3 Si 0.99 45.84 29.55 68.60 2.03 47.87 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.25 -14.26 10.28 84.03 0.86 -13.40 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -33.54 3.40 -691.31 -2.35 -35.90 16 10 C 0.13 6.74 5.62 86.85 0.49 7.22 16 11 C 0.09 3.63 4.06 31.98 0.13 3.76 16 12 H 0.09 3.02 8.01 -2.38 -0.02 3.00 16 13 O -0.57 -20.27 13.47 -148.98 -2.01 -22.28 16 14 C 0.16 6.61 3.05 46.18 0.14 6.75 16 15 H 0.07 3.51 7.55 -2.39 -0.02 3.50 16 16 N -0.70 -24.34 5.09 -441.28 -2.25 -26.59 16 17 C 0.59 22.12 7.77 86.31 0.67 22.79 16 18 O -0.60 -27.42 15.30 -4.58 -0.07 -27.49 16 19 C -0.28 -8.64 6.20 -19.76 -0.12 -8.76 16 20 C -0.11 -2.35 10.27 22.28 0.23 -2.12 16 21 C -0.06 -0.88 11.53 83.04 0.96 0.07 16 22 N -0.34 -6.35 2.92 -346.29 -1.01 -7.37 16 23 C 0.05 0.54 10.89 83.19 0.91 1.45 16 24 C -0.15 -1.42 9.98 22.03 0.22 -1.20 16 25 C -0.09 -1.53 10.09 22.33 0.23 -1.30 16 26 C -0.13 -3.44 9.72 22.32 0.22 -3.22 16 27 C 0.10 2.65 6.70 39.43 0.26 2.91 16 28 C 0.13 6.26 7.01 86.68 0.61 6.86 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.09 5.08 5.86 -2.39 -0.01 5.06 16 32 H 0.40 10.63 9.11 -74.06 -0.67 9.95 16 33 H 0.41 11.44 7.53 -92.71 -0.70 10.75 16 34 H 0.17 2.69 7.53 -2.91 -0.02 2.67 16 35 H 0.22 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.21 0.16 8.06 -2.91 -0.02 0.14 16 37 H 0.19 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.13 3.92 7.07 -2.91 -0.02 3.90 16 40 H 0.04 1.81 8.03 -2.38 -0.02 1.79 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -83.20 345.14 0.53 -82.67 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.29 Total: 25.80 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.26 Total: 18.79 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.40 Total: -125.36 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -2.08 Total: -49.77 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -83.20 0.53 -82.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077362224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.677 kcal (2) G-P(sol) polarization free energy of solvation -83.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds