Wall clock time and date at job start Tue Mar 31 2020 10:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48505 * 109.46630 * 269.99461 * 3 2 1 5 5 H 1.48497 * 109.47270 * 29.98988 * 3 2 1 6 6 H 1.48501 * 109.47384 * 149.99503 * 3 2 1 7 7 C 1.38816 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99650 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00396 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00137 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.85068 * 23.81063 * 10 9 7 12 12 C 1.53777 * 113.61088 * 155.00333 * 10 9 7 13 13 C 1.53781 * 87.08336 * 89.11940 * 12 10 9 14 14 H 1.09002 * 113.61228 * 270.88201 * 13 12 10 15 15 C 1.53000 * 113.61707 * 140.06298 * 13 12 10 16 16 N 1.46499 * 109.46974 * 176.53042 * 15 13 12 17 17 C 1.34782 * 119.99847 * 180.02562 * 16 15 13 18 18 O 1.21634 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.47162 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.35747 * 125.13621 * 179.71783 * 19 17 16 21 21 C 1.46415 * 106.14566 * 179.89486 * 20 19 17 22 22 N 1.32948 * 133.89157 * 180.14299 * 21 20 19 23 23 C 1.31429 * 121.38743 * 180.28275 * 22 21 20 24 24 C 1.38866 * 121.18327 * 359.95245 * 23 22 21 25 25 C 1.38214 * 119.71170 * 0.02942 * 24 23 22 26 26 C 1.39306 * 118.33139 * 359.97438 * 25 24 23 27 27 O 1.34590 * 133.42235 * 180.02562 * 26 25 24 28 28 C 1.53775 * 113.61823 * 252.49932 * 10 9 7 29 29 H 0.96998 * 120.00023 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00159 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.61941 * 334.56647 * 12 10 9 32 32 H 1.09009 * 113.68972 * 203.67727 * 12 10 9 33 33 H 1.09001 * 109.47043 * 296.52693 * 15 13 12 34 34 H 1.08992 * 109.47277 * 56.52863 * 15 13 12 35 35 H 0.96991 * 120.00303 * 359.97438 * 16 15 13 36 36 H 1.08004 * 126.92609 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.41125 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.14504 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.83681 * 180.02562 * 25 24 23 40 40 H 1.08993 * 113.61636 * 156.33149 * 28 10 9 41 41 H 1.09008 * 113.61006 * 25.43391 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0655 -3.5639 0.4060 12 6 1.2601 -4.8288 0.5959 13 6 0.7205 -5.0791 -0.8221 14 1 -0.1902 -4.5240 -1.0471 15 6 0.6177 -6.5617 -1.1860 16 7 0.0194 -6.6976 -2.5163 17 6 -0.1709 -7.9216 -3.0477 18 8 0.1545 -8.9131 -2.4229 19 6 -0.7714 -8.0582 -4.3843 20 6 -1.0046 -9.2351 -5.0194 21 6 -1.6086 -8.8898 -6.3077 22 7 -2.0480 -9.6026 -7.3403 23 6 -2.5546 -9.0235 -8.4058 24 6 -2.6522 -7.6412 -8.4950 25 6 -2.2099 -6.8543 -7.4484 26 6 -1.6757 -7.4849 -6.3269 27 8 -1.1681 -7.0328 -5.1653 28 6 1.9992 -4.4022 -1.3432 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 0.4937 -4.5190 1.3064 32 1 1.8857 -5.6374 0.9741 33 1 1.6134 -7.0051 -1.1884 34 1 -0.0060 -7.0733 -0.4531 35 1 -0.2404 -5.9070 -3.0144 36 1 -0.7894 -10.2263 -4.6485 37 1 -2.9016 -9.6336 -9.2266 38 1 -3.0718 -7.1830 -9.3784 39 1 -2.2775 -5.7776 -7.4983 40 1 2.8280 -5.0934 -1.4958 41 1 1.8294 -3.7479 -2.1984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086430411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:58 Heat of formation + Delta-G solvation = 39.556202 kcal Electronic energy + Delta-G solvation = -24479.081468 eV Core-core repulsion = 20747.648168 eV Total energy + Delta-G solvation = -3731.433299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.07735 -39.99632 -39.18571 -38.52110 -34.93714 -33.61774 -33.28191 -31.92813 -30.76339 -30.07181 -27.73206 -25.16647 -25.02855 -23.87006 -23.60866 -22.28368 -21.67961 -21.04427 -19.10787 -18.21990 -18.10288 -17.35042 -16.96438 -16.86756 -16.13353 -15.99171 -15.39903 -14.94590 -14.56898 -14.22006 -14.19269 -13.79151 -13.72862 -13.50429 -13.43245 -13.32323 -13.06441 -12.91790 -12.35755 -11.97858 -11.49236 -11.09622 -11.00864 -10.88715 -10.72005 -10.52148 -10.20611 -9.96615 -9.92425 -9.73412 -9.57952 -9.46315 -9.30345 -9.00409 -8.92628 -7.04467 -5.84603 -3.13793 0.03614 0.67204 1.36103 1.94915 2.78749 2.82371 3.28855 3.39082 3.44658 3.46194 3.64629 3.97244 4.27106 4.40790 4.51010 4.52316 4.73118 4.88813 4.96703 4.98577 5.13321 5.17206 5.33996 5.41010 5.48940 5.53566 5.61217 5.69029 5.75927 5.84756 5.87805 6.00824 6.15210 6.17535 6.32231 6.41607 6.52698 6.69518 6.82829 6.99024 7.22017 7.38901 7.65458 7.79076 8.34561 9.45299 10.02473 10.36575 11.37819 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.002415 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.182089 B =11589.877357 C =13003.505766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.121 4.121 14 H 0.095 0.905 15 C 0.128 3.872 16 N -0.705 5.705 17 C 0.596 3.404 18 O -0.514 6.514 19 C -0.001 4.001 20 C -0.107 4.107 21 C 0.063 3.937 22 N -0.440 5.440 23 C 0.101 3.899 24 C -0.143 4.143 25 C -0.058 4.058 26 C 0.018 3.982 27 O -0.175 6.175 28 C -0.169 4.169 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.068 0.932 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -17.308 -14.923 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.186 4.186 13 C -0.140 4.140 14 H 0.113 0.887 15 C 0.006 3.994 16 N -0.355 5.355 17 C 0.380 3.620 18 O -0.392 6.392 19 C -0.053 4.053 20 C -0.128 4.128 21 C -0.067 4.067 22 N -0.150 5.150 23 C -0.064 4.064 24 C -0.163 4.163 25 C -0.085 4.085 26 C -0.033 4.033 27 O -0.075 6.075 28 C -0.211 4.211 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.196 0.804 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.087 0.913 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.513 -18.433 -14.215 23.711 hybrid contribution -0.199 2.115 -0.524 2.188 sum -4.712 -16.318 -14.739 22.488 Atomic orbital electron populations 1.69660 1.05146 1.25824 1.57436 1.24770 0.95549 0.97820 1.02746 0.86165 0.78685 0.83652 0.77540 1.21679 1.21736 1.20670 1.19290 0.91132 0.83955 1.43003 0.90969 1.42173 1.05685 0.99443 1.87120 1.21047 0.95164 0.85587 0.92683 0.91867 1.23447 1.00528 0.99750 0.94918 1.22740 0.99808 0.92581 0.98891 0.88723 1.21652 0.98328 0.97678 0.81745 1.46020 1.61811 1.07564 1.20123 1.16635 0.78833 0.84492 0.82082 1.90898 1.51217 1.37490 1.59545 1.22213 1.03667 0.85871 0.93571 1.22498 0.99986 0.99423 0.90938 1.20649 1.01651 0.89240 0.95142 1.67041 1.08451 1.40129 0.99331 1.22875 0.95760 0.92630 0.95175 1.22105 1.00233 0.94923 0.99029 1.20577 0.97090 1.01604 0.89227 1.20587 1.00415 0.94226 0.88041 1.84038 1.65059 1.34269 1.24181 1.23907 0.95568 0.99689 1.01892 0.93417 0.78111 0.91214 0.90337 0.90880 0.91108 0.75461 0.80393 0.81499 0.82979 0.83255 0.91299 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.00 5.31 -52.64 -0.28 -17.28 16 10 C 0.17 3.16 4.56 -67.12 -0.31 2.85 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.15 -2.24 7.39 -25.92 -0.19 -2.43 16 13 C -0.12 -1.72 3.63 -89.81 -0.33 -2.05 16 14 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 15 C 0.13 1.60 5.50 -4.04 -0.02 1.58 16 16 N -0.71 -8.53 5.55 -61.47 -0.34 -8.87 16 17 C 0.60 7.81 7.80 -12.64 -0.10 7.71 16 18 O -0.51 -7.99 16.83 5.25 0.09 -7.90 16 19 C 0.00 -0.01 7.07 -36.85 -0.26 -0.27 16 20 C -0.11 -1.25 10.81 -37.18 -0.40 -1.65 16 21 C 0.06 0.74 7.52 -83.18 -0.63 0.11 16 22 N -0.44 -4.81 10.41 -9.87 -0.10 -4.92 16 23 C 0.10 0.74 11.17 -17.49 -0.20 0.55 16 24 C -0.14 -0.84 10.09 -39.36 -0.40 -1.24 16 25 C -0.06 -0.46 10.19 -39.19 -0.40 -0.86 16 26 C 0.02 0.20 7.42 -38.27 -0.28 -0.09 16 27 O -0.18 -2.05 10.28 3.36 0.03 -2.01 16 28 C -0.17 -2.71 7.43 -25.92 -0.19 -2.90 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.38 9.81 7.90 -40.82 -0.32 9.48 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.02 8.10 -51.92 -0.42 0.60 16 33 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.41 4.57 8.19 -40.82 -0.33 4.23 16 36 H 0.18 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 39 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 41 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -32.48 357.38 -8.71 -41.19 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.25 Total: 10.13 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.95 Total: -5.85 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.00 Total: -57.84 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.12 Total: -9.91 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.48 -8.71 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086430411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.742 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds