Wall clock time and date at job start Tue Mar 31 2020 10:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48505 * 109.46630 * 269.99461 * 3 2 1 5 5 H 1.48497 * 109.47270 * 29.98988 * 3 2 1 6 6 H 1.48501 * 109.47384 * 149.99503 * 3 2 1 7 7 C 1.38816 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99650 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00396 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00137 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.85068 * 23.81063 * 10 9 7 12 12 C 1.53777 * 113.61088 * 155.00333 * 10 9 7 13 13 C 1.53781 * 87.08336 * 89.11940 * 12 10 9 14 14 H 1.09002 * 113.61228 * 270.88201 * 13 12 10 15 15 C 1.53000 * 113.61707 * 140.06298 * 13 12 10 16 16 N 1.46499 * 109.46974 * 176.53042 * 15 13 12 17 17 C 1.34782 * 119.99847 * 180.02562 * 16 15 13 18 18 O 1.21634 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.47162 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.35747 * 125.13621 * 179.71783 * 19 17 16 21 21 C 1.46415 * 106.14566 * 179.89486 * 20 19 17 22 22 N 1.32948 * 133.89157 * 180.14299 * 21 20 19 23 23 C 1.31429 * 121.38743 * 180.28275 * 22 21 20 24 24 C 1.38866 * 121.18327 * 359.95245 * 23 22 21 25 25 C 1.38214 * 119.71170 * 0.02942 * 24 23 22 26 26 C 1.39306 * 118.33139 * 359.97438 * 25 24 23 27 27 O 1.34590 * 133.42235 * 180.02562 * 26 25 24 28 28 C 1.53775 * 113.61823 * 252.49932 * 10 9 7 29 29 H 0.96998 * 120.00023 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00159 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.61941 * 334.56647 * 12 10 9 32 32 H 1.09009 * 113.68972 * 203.67727 * 12 10 9 33 33 H 1.09001 * 109.47043 * 296.52693 * 15 13 12 34 34 H 1.08992 * 109.47277 * 56.52863 * 15 13 12 35 35 H 0.96991 * 120.00303 * 359.97438 * 16 15 13 36 36 H 1.08004 * 126.92609 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.41125 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.14504 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.83681 * 180.02562 * 25 24 23 40 40 H 1.08993 * 113.61636 * 156.33149 * 28 10 9 41 41 H 1.09008 * 113.61006 * 25.43391 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0655 -3.5639 0.4060 12 6 1.2601 -4.8288 0.5959 13 6 0.7205 -5.0791 -0.8221 14 1 -0.1902 -4.5240 -1.0471 15 6 0.6177 -6.5617 -1.1860 16 7 0.0194 -6.6976 -2.5163 17 6 -0.1709 -7.9216 -3.0477 18 8 0.1545 -8.9131 -2.4229 19 6 -0.7714 -8.0582 -4.3843 20 6 -1.0046 -9.2351 -5.0194 21 6 -1.6086 -8.8898 -6.3077 22 7 -2.0480 -9.6026 -7.3403 23 6 -2.5546 -9.0235 -8.4058 24 6 -2.6522 -7.6412 -8.4950 25 6 -2.2099 -6.8543 -7.4484 26 6 -1.6757 -7.4849 -6.3269 27 8 -1.1681 -7.0328 -5.1653 28 6 1.9992 -4.4022 -1.3432 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 0.4937 -4.5190 1.3064 32 1 1.8857 -5.6374 0.9741 33 1 1.6134 -7.0051 -1.1884 34 1 -0.0060 -7.0733 -0.4531 35 1 -0.2404 -5.9070 -3.0144 36 1 -0.7894 -10.2263 -4.6485 37 1 -2.9016 -9.6336 -9.2266 38 1 -3.0718 -7.1830 -9.3784 39 1 -2.2775 -5.7776 -7.4983 40 1 2.8280 -5.0934 -1.4958 41 1 1.8294 -3.7479 -2.1984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086430411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:57 Heat of formation + Delta-G solvation = 17.210049 kcal Electronic energy + Delta-G solvation = -24480.050470 eV Core-core repulsion = 20747.648168 eV Total energy + Delta-G solvation = -3732.402301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.85725 -41.02695 -40.04465 -39.71180 -36.18948 -35.05283 -34.32717 -32.66255 -32.19612 -31.26832 -28.94002 -26.43721 -26.17329 -25.37317 -24.48657 -23.30457 -22.76451 -21.96104 -20.22669 -19.49519 -19.22626 -18.81438 -17.81289 -17.58619 -17.15894 -16.84258 -16.65761 -16.40290 -15.79760 -15.75600 -15.13713 -14.81051 -14.77141 -14.63380 -14.42317 -14.31574 -14.10519 -13.77833 -13.60885 -13.29545 -12.95157 -12.93387 -12.65256 -12.17148 -12.08829 -11.85363 -11.71021 -11.49506 -11.36855 -10.95473 -10.81490 -10.58519 -10.33241 -10.20108 -9.77577 -9.00129 -7.95810 -5.23890 -0.72093 0.02190 0.58062 1.13852 1.47906 1.48793 1.57395 1.85461 1.87167 2.55543 2.63655 2.88473 3.26271 3.36930 3.54691 3.70008 3.73148 3.76612 3.86165 3.91585 4.12462 4.17617 4.25438 4.32185 4.39465 4.47478 4.67376 4.70471 4.72502 4.89975 4.93809 4.99192 5.00821 5.04630 5.14853 5.26024 5.34632 5.42696 5.52941 5.66152 5.68193 6.23523 6.28160 6.74533 6.79063 7.33094 8.10653 8.32503 9.27537 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.002415 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.182089 B =11589.877357 C =13003.505766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.061 0.939 12 C -0.132 4.132 13 C -0.105 4.105 14 H 0.081 0.919 15 C 0.137 3.863 16 N -0.701 5.701 17 C 0.600 3.400 18 O -0.543 6.543 19 C -0.017 4.017 20 C -0.109 4.109 21 C 0.033 3.967 22 N -0.472 5.472 23 C 0.102 3.898 24 C -0.121 4.121 25 C -0.067 4.067 26 C -0.002 4.002 27 O -0.182 6.182 28 C -0.155 4.155 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.414 0.586 36 H 0.182 0.818 37 H 0.204 0.796 38 H 0.198 0.802 39 H 0.172 0.828 40 H 0.094 0.906 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -17.880 -16.800 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.079 0.921 12 C -0.171 4.171 13 C -0.124 4.124 14 H 0.099 0.901 15 C 0.014 3.986 16 N -0.350 5.350 17 C 0.386 3.614 18 O -0.422 6.422 19 C -0.068 4.068 20 C -0.130 4.130 21 C -0.095 4.095 22 N -0.182 5.182 23 C -0.064 4.064 24 C -0.140 4.140 25 C -0.093 4.093 26 C -0.052 4.052 27 O -0.083 6.083 28 C -0.196 4.196 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.200 0.800 37 H 0.220 0.780 38 H 0.215 0.785 39 H 0.190 0.810 40 H 0.112 0.888 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.354 -19.034 -16.089 25.300 hybrid contribution -0.267 2.205 -0.106 2.224 sum -4.621 -16.829 -16.195 23.808 Atomic orbital electron populations 1.69809 1.06559 1.26059 1.59588 1.25549 0.96382 1.01054 1.03833 0.85159 0.77742 0.79600 0.77383 1.21478 1.22327 1.19436 1.19673 0.91534 0.85200 1.40911 0.90541 1.42311 1.05334 1.00599 1.87593 1.21392 0.95167 0.84924 0.95231 0.92085 1.23342 0.99969 0.98675 0.95105 1.22516 0.98420 0.93498 0.97942 0.90107 1.21537 0.98941 0.96086 0.82024 1.45961 1.61468 1.07572 1.20004 1.16664 0.78337 0.84181 0.82263 1.90872 1.52619 1.38262 1.60475 1.21927 1.05120 0.86242 0.93557 1.22674 0.99437 0.99524 0.91373 1.20732 1.03170 0.89925 0.95636 1.67060 1.09849 1.41090 1.00216 1.23648 0.93962 0.94043 0.94769 1.22648 0.97732 0.94221 0.99438 1.21084 0.96558 1.03106 0.88534 1.21069 1.01223 0.94429 0.88502 1.83989 1.65422 1.34164 1.24682 1.23739 0.97352 0.99314 0.99169 0.94032 0.79372 0.92270 0.87224 0.90117 0.90573 0.74933 0.80043 0.77978 0.78494 0.81036 0.88770 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.41 13.06 21.65 0.28 -58.12 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.24 -13.13 9.97 84.04 0.84 -12.29 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.12 5.31 -320.46 -1.70 -36.82 16 10 C 0.14 5.29 4.56 45.51 0.21 5.50 16 11 H 0.06 2.27 8.10 -2.39 -0.02 2.25 16 12 C -0.13 -3.82 7.39 31.12 0.23 -3.59 16 13 C -0.10 -2.87 3.63 -10.27 -0.04 -2.91 16 14 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 15 C 0.14 3.22 5.50 86.38 0.48 3.69 16 16 N -0.70 -16.63 5.55 -466.63 -2.59 -19.22 16 17 C 0.60 15.84 7.80 86.59 0.68 16.51 16 18 O -0.54 -16.93 16.83 -4.14 -0.07 -17.00 16 19 C -0.02 -0.41 7.07 24.04 0.17 -0.24 16 20 C -0.11 -2.63 10.81 23.82 0.26 -2.37 16 21 C 0.03 0.79 7.52 41.70 0.31 1.10 16 22 N -0.47 -9.89 10.41 -185.14 -1.93 -11.82 16 23 C 0.10 1.20 11.17 84.90 0.95 2.15 16 24 C -0.12 -0.99 10.09 22.41 0.23 -0.76 16 25 C -0.07 -0.89 10.19 22.52 0.23 -0.66 16 26 C 0.00 -0.04 7.42 23.12 0.17 0.13 16 27 O -0.18 -4.32 10.28 -10.87 -0.11 -4.43 16 28 C -0.16 -4.79 7.43 31.12 0.23 -4.55 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.37 19.56 7.90 -92.71 -0.73 18.83 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.11 2.53 8.10 -2.38 -0.02 2.52 16 33 H 0.08 1.84 7.88 -2.39 -0.02 1.82 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.41 9.16 8.19 -92.71 -0.76 8.41 16 36 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 37 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 38 H 0.20 -0.19 8.06 -2.91 -0.02 -0.21 16 39 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.09 2.45 7.92 -2.39 -0.02 2.43 16 41 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -72.27 357.38 0.90 -71.37 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.41 Total: 30.66 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.40 Total: -2.12 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -5.94 Total: -125.98 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.18 Total: -21.43 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.27 0.90 -71.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086430411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.584 kcal (2) G-P(sol) polarization free energy of solvation -72.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds