Wall clock time and date at job start Tue Mar 31 2020 10:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86805 * 119.99942 * 2 1 4 4 H 1.48502 * 109.46768 * 239.99482 * 3 2 1 5 5 H 1.48490 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47356 * 119.99880 * 3 2 1 7 7 C 1.38816 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00012 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00302 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61687 * 155.00490 * 10 9 7 12 12 C 1.53781 * 87.08219 * 89.11614 * 11 10 9 13 13 C 1.52996 * 113.61494 * 139.98040 * 12 11 10 14 14 N 1.46498 * 109.47059 * 176.52844 * 13 12 11 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 12 16 16 O 1.21563 * 119.99930 * 0.28080 * 15 14 13 17 17 C 1.47784 * 120.00079 * 180.27815 * 15 14 13 18 18 N 1.32815 * 120.07384 * 359.72664 * 17 15 14 19 19 C 1.31672 * 122.01472 * 179.74401 * 18 17 15 20 20 C 1.38400 * 121.69973 * 0.51864 * 19 18 17 21 21 C 1.38866 * 119.12930 * 359.75778 * 20 19 18 22 22 O 1.34430 * 134.63057 * 179.97438 * 21 20 19 23 23 C 1.34452 * 110.84573 * 180.02562 * 22 21 20 24 24 C 1.34300 * 110.17288 * 0.02562 * 23 22 21 25 25 C 1.40199 * 120.07428 * 180.02562 * 17 15 14 26 26 C 1.53784 * 87.17365 * 25.39029 * 12 11 10 27 27 H 0.97005 * 120.00422 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99812 * 0.02562 * 9 7 2 29 29 H 1.09005 * 112.84572 * 23.80493 * 10 9 7 30 30 H 1.09001 * 113.61002 * 334.57266 * 11 10 9 31 31 H 1.08999 * 113.61625 * 203.66756 * 11 10 9 32 32 H 1.08997 * 113.61492 * 270.80453 * 12 11 10 33 33 H 1.09004 * 109.47066 * 56.53112 * 13 12 11 34 34 H 1.08994 * 109.46974 * 296.53260 * 13 12 11 35 35 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 36 36 H 1.07998 * 119.15273 * 180.28068 * 19 18 17 37 37 H 1.07996 * 120.43403 * 179.73660 * 20 19 18 38 38 H 1.08000 * 124.90999 * 179.97438 * 23 22 21 39 39 H 1.07992 * 126.89932 * 180.02562 * 24 23 22 40 40 H 1.09004 * 113.61160 * 89.15289 * 26 12 11 41 41 H 1.08999 * 113.62074 * 220.06161 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.2601 -4.8283 0.5991 12 6 0.7205 -5.0799 -0.8187 13 6 0.6197 -6.5626 -1.1821 14 7 0.0212 -6.6999 -2.5122 15 6 -0.1619 -7.9240 -3.0456 16 8 0.1649 -8.9143 -2.4209 17 6 -0.7599 -8.0623 -4.3899 18 7 -1.1225 -6.9815 -5.0715 19 6 -1.6542 -7.0600 -6.2735 20 6 -1.8757 -8.2779 -6.8926 21 6 -1.5234 -9.4466 -6.2306 22 8 -1.5947 -10.7565 -6.5243 23 6 -1.1070 -11.5002 -5.5159 24 6 -0.6937 -10.7075 -4.5137 25 6 -0.9516 -9.3348 -4.9461 26 6 1.9979 -4.4027 -1.3428 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0016 29 1 3.0656 -3.5634 0.4081 30 1 0.4937 -4.5178 1.3092 31 1 1.8869 -5.6358 0.9774 32 1 -0.1909 -4.5260 -1.0437 33 1 -0.0032 -7.0749 -0.4487 34 1 1.6160 -7.0046 -1.1845 35 1 -0.2392 -5.9097 -3.0108 36 1 -1.9279 -6.1508 -6.7881 37 1 -2.3170 -8.3186 -7.8775 38 1 -1.0557 -12.5790 -5.5122 39 1 -0.2577 -11.0209 -3.5767 40 1 2.8268 -5.0936 -1.4963 41 1 1.8263 -3.7491 -2.1981 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091157533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:19 Heat of formation + Delta-G solvation = 41.011246 kcal Electronic energy + Delta-G solvation = -24726.153244 eV Core-core repulsion = 20994.783040 eV Total energy + Delta-G solvation = -3731.370204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.05567 -40.15992 -38.98166 -38.26990 -34.72648 -33.27411 -33.21873 -32.15970 -30.40821 -29.97230 -27.50125 -25.14132 -25.00296 -23.69923 -23.38947 -22.49964 -21.56839 -20.67249 -18.64515 -18.29449 -18.00323 -17.32126 -16.99347 -16.71155 -16.01452 -15.66086 -15.43433 -14.92358 -14.66479 -14.46359 -14.20031 -13.83558 -13.70733 -13.49046 -13.24105 -13.05814 -12.85659 -12.25891 -12.20019 -11.89604 -11.38196 -11.02968 -10.82276 -10.70558 -10.53475 -10.47324 -10.19287 -10.09477 -9.84540 -9.79680 -9.67236 -9.45500 -9.04116 -8.86694 -8.69982 -6.98593 -5.79168 -3.08146 -0.01897 0.79197 1.91005 2.20988 2.54848 3.00233 3.43532 3.47944 3.48910 3.56160 3.82854 4.05160 4.15009 4.52117 4.57028 4.64125 4.83054 4.96876 5.08564 5.10171 5.24936 5.30795 5.34744 5.46836 5.49544 5.65014 5.71537 5.86124 5.88045 5.95368 6.00486 6.12840 6.23364 6.39312 6.41485 6.53593 6.61008 6.78173 6.91852 7.07090 7.27208 7.59243 7.69853 8.11960 8.39998 9.50553 10.08413 10.42638 11.43209 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.002362 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.688307 B =11851.529160 C =12757.703373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.129 3.871 14 N -0.699 5.699 15 C 0.567 3.433 16 O -0.535 6.535 17 C 0.139 3.861 18 N -0.460 5.460 19 C 0.112 3.888 20 C -0.137 4.137 21 C 0.079 3.921 22 O -0.189 6.189 23 C 0.002 3.998 24 C -0.175 4.175 25 C -0.135 4.135 26 C -0.169 4.169 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.414 0.586 36 H 0.178 0.822 37 H 0.150 0.850 38 H 0.216 0.784 39 H 0.174 0.826 40 H 0.067 0.933 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 -22.343 -13.183 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.006 3.994 14 N -0.350 5.350 15 C 0.351 3.649 16 O -0.411 6.411 17 C -0.004 4.004 18 N -0.173 5.173 19 C -0.042 4.042 20 C -0.158 4.158 21 C 0.024 3.976 22 O -0.089 6.089 23 C -0.062 4.062 24 C -0.195 4.195 25 C -0.139 4.139 26 C -0.210 4.210 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.194 0.806 37 H 0.167 0.833 38 H 0.232 0.768 39 H 0.191 0.809 40 H 0.086 0.914 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.611 -22.124 -12.574 25.702 hybrid contribution -0.168 0.399 -0.671 0.799 sum -3.780 -21.725 -13.246 25.723 Atomic orbital electron populations 1.69646 1.05130 1.25889 1.57400 1.24760 0.95535 0.97772 1.02803 0.86245 0.78515 0.83411 0.77882 1.21226 1.21696 1.21216 1.19244 0.91082 0.83990 1.43046 0.91058 1.42165 1.05692 0.99424 1.87127 1.21090 0.95070 0.85586 0.92728 1.23441 1.00488 0.99697 0.95064 1.22719 0.99763 0.92783 0.98608 1.21571 0.98082 0.97366 0.82349 1.45938 1.61428 1.08154 1.19452 1.17672 0.78995 0.84024 0.84201 1.90755 1.51348 1.37646 1.61391 1.20778 0.97294 0.87290 0.95050 1.67693 1.10362 1.30903 1.08313 1.22655 0.94507 0.96719 0.90276 1.21230 1.03712 0.88574 1.02242 1.19721 0.99297 0.84258 0.94293 1.83980 1.68609 1.14669 1.41605 1.24291 0.98553 0.97497 0.85848 1.22726 1.05442 0.89491 1.01832 1.20644 1.02870 0.95099 0.95305 1.23921 0.95609 0.99645 1.01794 0.93391 0.78090 0.91961 0.91286 0.90451 0.88747 0.91530 0.91298 0.74977 0.80553 0.83275 0.76758 0.80876 0.91441 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.42 5.31 -52.54 -0.28 -17.70 16 10 C 0.17 3.27 4.57 -67.02 -0.31 2.97 16 11 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 12 C -0.12 -1.83 3.62 -89.81 -0.33 -2.16 16 13 C 0.13 1.78 5.50 -4.04 -0.02 1.76 16 14 N -0.70 -9.60 5.55 -61.27 -0.34 -9.94 16 15 C 0.57 8.28 7.80 -12.36 -0.10 8.18 16 16 O -0.53 -8.75 15.20 5.31 0.08 -8.67 16 17 C 0.14 1.84 6.78 -82.80 -0.56 1.28 16 18 N -0.46 -5.46 9.55 -9.68 -0.09 -5.56 16 19 C 0.11 0.98 11.13 -17.56 -0.20 0.79 16 20 C -0.14 -1.11 10.13 -39.29 -0.40 -1.51 16 21 C 0.08 0.82 7.48 -38.29 -0.29 0.53 16 22 O -0.19 -1.76 10.57 4.96 0.05 -1.70 16 23 C 0.00 0.02 11.97 29.34 0.35 0.37 16 24 C -0.17 -1.78 10.31 -37.77 -0.39 -2.17 16 25 C -0.13 -1.64 6.16 -104.90 -0.65 -2.29 16 26 C -0.17 -2.85 7.44 -25.82 -0.19 -3.04 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.39 10.05 7.90 -40.82 -0.32 9.73 16 29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 35 H 0.41 5.47 7.81 -40.82 -0.32 5.15 16 36 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.17 1.76 7.29 -52.49 -0.38 1.38 16 40 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -33.12 353.75 -8.24 -41.37 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.19 Total: 11.95 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.51 Total: -5.12 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.01 Total: -60.35 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.13 Total: -10.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.12 -8.24 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091157533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.378 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds