Wall clock time and date at job start Tue Mar 31 2020 10:54:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31607 * 1
3 3 Si 1.86805 * 119.99942 * 2 1
4 4 H 1.48502 * 109.46768 * 239.99482 * 3 2 1
5 5 H 1.48490 * 109.47033 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47356 * 119.99880 * 3 2 1
7 7 C 1.38816 * 120.00253 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00012 * 180.02562 * 7 2 1
9 9 N 1.36936 * 119.99992 * 359.97438 * 7 2 1
10 10 C 1.46498 * 120.00302 * 180.02562 * 9 7 2
11 11 C 1.53781 * 113.61687 * 155.00490 * 10 9 7
12 12 C 1.53781 * 87.08219 * 89.11614 * 11 10 9
13 13 C 1.52996 * 113.61494 * 139.98040 * 12 11 10
14 14 N 1.46498 * 109.47059 * 176.52844 * 13 12 11
15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 12
16 16 O 1.21563 * 119.99930 * 0.28080 * 15 14 13
17 17 C 1.47784 * 120.00079 * 180.27815 * 15 14 13
18 18 N 1.32815 * 120.07384 * 359.72664 * 17 15 14
19 19 C 1.31672 * 122.01472 * 179.74401 * 18 17 15
20 20 C 1.38400 * 121.69973 * 0.51864 * 19 18 17
21 21 C 1.38866 * 119.12930 * 359.75778 * 20 19 18
22 22 O 1.34430 * 134.63057 * 179.97438 * 21 20 19
23 23 C 1.34452 * 110.84573 * 180.02562 * 22 21 20
24 24 C 1.34300 * 110.17288 * 0.02562 * 23 22 21
25 25 C 1.40199 * 120.07428 * 180.02562 * 17 15 14
26 26 C 1.53784 * 87.17365 * 25.39029 * 12 11 10
27 27 H 0.97005 * 120.00422 * 0.02562 * 1 2 3
28 28 H 0.97003 * 119.99812 * 0.02562 * 9 7 2
29 29 H 1.09005 * 112.84572 * 23.80493 * 10 9 7
30 30 H 1.09001 * 113.61002 * 334.57266 * 11 10 9
31 31 H 1.08999 * 113.61625 * 203.66756 * 11 10 9
32 32 H 1.08997 * 113.61492 * 270.80453 * 12 11 10
33 33 H 1.09004 * 109.47066 * 56.53112 * 13 12 11
34 34 H 1.08994 * 109.46974 * 296.53260 * 13 12 11
35 35 H 0.97001 * 120.00384 * 0.02562 * 14 13 12
36 36 H 1.07998 * 119.15273 * 180.28068 * 19 18 17
37 37 H 1.07996 * 120.43403 * 179.73660 * 20 19 18
38 38 H 1.08000 * 124.90999 * 179.97438 * 23 22 21
39 39 H 1.07992 * 126.89932 * 180.02562 * 24 23 22
40 40 H 1.09004 * 113.61160 * 89.15289 * 26 12 11
41 41 H 1.08999 * 113.62074 * 220.06161 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6963 -1.2125
5 1 1.2851 2.7464 -0.0006
6 1 3.1038 1.6965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0016
10 6 2.0580 -3.6568 0.0027
11 6 1.2601 -4.8283 0.5991
12 6 0.7205 -5.0799 -0.8187
13 6 0.6197 -6.5626 -1.1821
14 7 0.0212 -6.6999 -2.5122
15 6 -0.1619 -7.9240 -3.0456
16 8 0.1649 -8.9143 -2.4209
17 6 -0.7599 -8.0623 -4.3899
18 7 -1.1225 -6.9815 -5.0715
19 6 -1.6542 -7.0600 -6.2735
20 6 -1.8757 -8.2779 -6.8926
21 6 -1.5234 -9.4466 -6.2306
22 8 -1.5947 -10.7565 -6.5243
23 6 -1.1070 -11.5002 -5.5159
24 6 -0.6937 -10.7075 -4.5137
25 6 -0.9516 -9.3348 -4.9461
26 6 1.9979 -4.4027 -1.3428
27 1 -0.4851 0.8401 -0.0004
28 1 0.3555 -2.3881 0.0016
29 1 3.0656 -3.5634 0.4081
30 1 0.4937 -4.5178 1.3092
31 1 1.8869 -5.6358 0.9774
32 1 -0.1909 -4.5260 -1.0437
33 1 -0.0032 -7.0749 -0.4487
34 1 1.6160 -7.0046 -1.1845
35 1 -0.2392 -5.9097 -3.0108
36 1 -1.9279 -6.1508 -6.7881
37 1 -2.3170 -8.3186 -7.8775
38 1 -1.0557 -12.5790 -5.5122
39 1 -0.2577 -11.0209 -3.5767
40 1 2.8268 -5.0936 -1.4963
41 1 1.8263 -3.7491 -2.1981
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001091157533.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:19
Heat of formation + Delta-G solvation = 41.011246 kcal
Electronic energy + Delta-G solvation = -24726.153244 eV
Core-core repulsion = 20994.783040 eV
Total energy + Delta-G solvation = -3731.370204 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-43.05567 -40.15992 -38.98166 -38.26990 -34.72648 -33.27411 -33.21873 -32.15970
-30.40821 -29.97230 -27.50125 -25.14132 -25.00296 -23.69923 -23.38947 -22.49964
-21.56839 -20.67249 -18.64515 -18.29449 -18.00323 -17.32126 -16.99347 -16.71155
-16.01452 -15.66086 -15.43433 -14.92358 -14.66479 -14.46359 -14.20031 -13.83558
-13.70733 -13.49046 -13.24105 -13.05814 -12.85659 -12.25891 -12.20019 -11.89604
-11.38196 -11.02968 -10.82276 -10.70558 -10.53475 -10.47324 -10.19287 -10.09477
-9.84540 -9.79680 -9.67236 -9.45500 -9.04116 -8.86694 -8.69982 -6.98593
-5.79168 -3.08146 -0.01897 0.79197 1.91005 2.20988 2.54848 3.00233
3.43532 3.47944 3.48910 3.56160 3.82854 4.05160 4.15009 4.52117
4.57028 4.64125 4.83054 4.96876 5.08564 5.10171 5.24936 5.30795
5.34744 5.46836 5.49544 5.65014 5.71537 5.86124 5.88045 5.95368
6.00486 6.12840 6.23364 6.39312 6.41485 6.53593 6.61008 6.78173
6.91852 7.07090 7.27208 7.59243 7.69853 8.11960 8.39998 9.50553
10.08413 10.42638 11.43209
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.023510 B = 0.002362 C = 0.002194
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1190.688307 B =11851.529160 C =12757.703373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.013 4.013
3 Si 0.909 3.091
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.285 1.285
7 C -0.243 4.243
8 H 0.071 0.929
9 N -0.706 5.706
10 C 0.168 3.832
11 C -0.147 4.147
12 C -0.120 4.120
13 C 0.129 3.871
14 N -0.699 5.699
15 C 0.567 3.433
16 O -0.535 6.535
17 C 0.139 3.861
18 N -0.460 5.460
19 C 0.112 3.888
20 C -0.137 4.137
21 C 0.079 3.921
22 O -0.189 6.189
23 C 0.002 3.998
24 C -0.175 4.175
25 C -0.135 4.135
26 C -0.169 4.169
27 H 0.256 0.744
28 H 0.385 0.615
29 H 0.062 0.938
30 H 0.068 0.932
31 H 0.077 0.923
32 H 0.094 0.906
33 H 0.066 0.934
34 H 0.069 0.931
35 H 0.414 0.586
36 H 0.178 0.822
37 H 0.150 0.850
38 H 0.216 0.784
39 H 0.174 0.826
40 H 0.067 0.933
41 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.972 -22.343 -13.183 26.245
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.209 4.209
3 Si 0.739 3.261
4 H -0.212 1.212
5 H -0.217 1.217
6 H -0.212 1.212
7 C -0.374 4.374
8 H 0.089 0.911
9 N -0.344 5.344
10 C 0.055 3.945
11 C -0.187 4.187
12 C -0.139 4.139
13 C 0.006 3.994
14 N -0.350 5.350
15 C 0.351 3.649
16 O -0.411 6.411
17 C -0.004 4.004
18 N -0.173 5.173
19 C -0.042 4.042
20 C -0.158 4.158
21 C 0.024 3.976
22 O -0.089 6.089
23 C -0.062 4.062
24 C -0.195 4.195
25 C -0.139 4.139
26 C -0.210 4.210
27 H 0.066 0.934
28 H 0.219 0.781
29 H 0.080 0.920
30 H 0.087 0.913
31 H 0.095 0.905
32 H 0.113 0.887
33 H 0.085 0.915
34 H 0.087 0.913
35 H 0.250 0.750
36 H 0.194 0.806
37 H 0.167 0.833
38 H 0.232 0.768
39 H 0.191 0.809
40 H 0.086 0.914
41 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -3.611 -22.124 -12.574 25.702
hybrid contribution -0.168 0.399 -0.671 0.799
sum -3.780 -21.725 -13.246 25.723
Atomic orbital electron populations
1.69646 1.05130 1.25889 1.57400 1.24760 0.95535 0.97772 1.02803
0.86245 0.78515 0.83411 0.77882 1.21226 1.21696 1.21216 1.19244
0.91082 0.83990 1.43046 0.91058 1.42165 1.05692 0.99424 1.87127
1.21090 0.95070 0.85586 0.92728 1.23441 1.00488 0.99697 0.95064
1.22719 0.99763 0.92783 0.98608 1.21571 0.98082 0.97366 0.82349
1.45938 1.61428 1.08154 1.19452 1.17672 0.78995 0.84024 0.84201
1.90755 1.51348 1.37646 1.61391 1.20778 0.97294 0.87290 0.95050
1.67693 1.10362 1.30903 1.08313 1.22655 0.94507 0.96719 0.90276
1.21230 1.03712 0.88574 1.02242 1.19721 0.99297 0.84258 0.94293
1.83980 1.68609 1.14669 1.41605 1.24291 0.98553 0.97497 0.85848
1.22726 1.05442 0.89491 1.01832 1.20644 1.02870 0.95099 0.95305
1.23921 0.95609 0.99645 1.01794 0.93391 0.78090 0.91961 0.91286
0.90451 0.88747 0.91530 0.91298 0.74977 0.80553 0.83275 0.76758
0.80876 0.91441 0.91402
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16
2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16
3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16
4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16
6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
7 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16
8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
9 N -0.71 -17.42 5.31 -52.54 -0.28 -17.70 16
10 C 0.17 3.27 4.57 -67.02 -0.31 2.97 16
11 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16
12 C -0.12 -1.83 3.62 -89.81 -0.33 -2.16 16
13 C 0.13 1.78 5.50 -4.04 -0.02 1.76 16
14 N -0.70 -9.60 5.55 -61.27 -0.34 -9.94 16
15 C 0.57 8.28 7.80 -12.36 -0.10 8.18 16
16 O -0.53 -8.75 15.20 5.31 0.08 -8.67 16
17 C 0.14 1.84 6.78 -82.80 -0.56 1.28 16
18 N -0.46 -5.46 9.55 -9.68 -0.09 -5.56 16
19 C 0.11 0.98 11.13 -17.56 -0.20 0.79 16
20 C -0.14 -1.11 10.13 -39.29 -0.40 -1.51 16
21 C 0.08 0.82 7.48 -38.29 -0.29 0.53 16
22 O -0.19 -1.76 10.57 4.96 0.05 -1.70 16
23 C 0.00 0.02 11.97 29.34 0.35 0.37 16
24 C -0.17 -1.78 10.31 -37.77 -0.39 -2.17 16
25 C -0.13 -1.64 6.16 -104.90 -0.65 -2.29 16
26 C -0.17 -2.85 7.44 -25.82 -0.19 -3.04 16
27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
28 H 0.39 10.05 7.90 -40.82 -0.32 9.73 16
29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16
30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16
31 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16
32 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16
33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
34 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16
35 H 0.41 5.47 7.81 -40.82 -0.32 5.15 16
36 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16
37 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16
38 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16
39 H 0.17 1.76 7.29 -52.49 -0.38 1.38 16
40 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16
41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
LS Contribution 353.75 15.07 5.33 5.33
Total: -1.00 -33.12 353.75 -8.24 -41.37
By element:
Atomic # 1 Polarization: 17.14 SS G_CDS: -5.19 Total: 11.95 kcal
Atomic # 6 Polarization: -1.62 SS G_CDS: -3.51 Total: -5.12 kcal
Atomic # 7 Polarization: -60.36 SS G_CDS: 0.01 Total: -60.35 kcal
Atomic # 8 Polarization: -10.51 SS G_CDS: 0.13 Total: -10.37 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -33.12 -8.24 -41.37 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001091157533.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.378 kcal
(2) G-P(sol) polarization free energy of solvation -33.123 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.255 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.011 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds