Wall clock time and date at job start Tue Mar 31 2020 10:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86805 * 119.99942 * 2 1 4 4 H 1.48502 * 109.46768 * 239.99482 * 3 2 1 5 5 H 1.48490 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47356 * 119.99880 * 3 2 1 7 7 C 1.38816 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00012 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00302 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61687 * 155.00490 * 10 9 7 12 12 C 1.53781 * 87.08219 * 89.11614 * 11 10 9 13 13 C 1.52996 * 113.61494 * 139.98040 * 12 11 10 14 14 N 1.46498 * 109.47059 * 176.52844 * 13 12 11 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 12 16 16 O 1.21563 * 119.99930 * 0.28080 * 15 14 13 17 17 C 1.47784 * 120.00079 * 180.27815 * 15 14 13 18 18 N 1.32815 * 120.07384 * 359.72664 * 17 15 14 19 19 C 1.31672 * 122.01472 * 179.74401 * 18 17 15 20 20 C 1.38400 * 121.69973 * 0.51864 * 19 18 17 21 21 C 1.38866 * 119.12930 * 359.75778 * 20 19 18 22 22 O 1.34430 * 134.63057 * 179.97438 * 21 20 19 23 23 C 1.34452 * 110.84573 * 180.02562 * 22 21 20 24 24 C 1.34300 * 110.17288 * 0.02562 * 23 22 21 25 25 C 1.40199 * 120.07428 * 180.02562 * 17 15 14 26 26 C 1.53784 * 87.17365 * 25.39029 * 12 11 10 27 27 H 0.97005 * 120.00422 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99812 * 0.02562 * 9 7 2 29 29 H 1.09005 * 112.84572 * 23.80493 * 10 9 7 30 30 H 1.09001 * 113.61002 * 334.57266 * 11 10 9 31 31 H 1.08999 * 113.61625 * 203.66756 * 11 10 9 32 32 H 1.08997 * 113.61492 * 270.80453 * 12 11 10 33 33 H 1.09004 * 109.47066 * 56.53112 * 13 12 11 34 34 H 1.08994 * 109.46974 * 296.53260 * 13 12 11 35 35 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 36 36 H 1.07998 * 119.15273 * 180.28068 * 19 18 17 37 37 H 1.07996 * 120.43403 * 179.73660 * 20 19 18 38 38 H 1.08000 * 124.90999 * 179.97438 * 23 22 21 39 39 H 1.07992 * 126.89932 * 180.02562 * 24 23 22 40 40 H 1.09004 * 113.61160 * 89.15289 * 26 12 11 41 41 H 1.08999 * 113.62074 * 220.06161 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.2601 -4.8283 0.5991 12 6 0.7205 -5.0799 -0.8187 13 6 0.6197 -6.5626 -1.1821 14 7 0.0212 -6.6999 -2.5122 15 6 -0.1619 -7.9240 -3.0456 16 8 0.1649 -8.9143 -2.4209 17 6 -0.7599 -8.0623 -4.3899 18 7 -1.1225 -6.9815 -5.0715 19 6 -1.6542 -7.0600 -6.2735 20 6 -1.8757 -8.2779 -6.8926 21 6 -1.5234 -9.4466 -6.2306 22 8 -1.5947 -10.7565 -6.5243 23 6 -1.1070 -11.5002 -5.5159 24 6 -0.6937 -10.7075 -4.5137 25 6 -0.9516 -9.3348 -4.9461 26 6 1.9979 -4.4027 -1.3428 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0016 29 1 3.0656 -3.5634 0.4081 30 1 0.4937 -4.5178 1.3092 31 1 1.8869 -5.6358 0.9774 32 1 -0.1909 -4.5260 -1.0437 33 1 -0.0032 -7.0749 -0.4487 34 1 1.6160 -7.0046 -1.1845 35 1 -0.2392 -5.9097 -3.0108 36 1 -1.9279 -6.1508 -6.7881 37 1 -2.3170 -8.3186 -7.8775 38 1 -1.0557 -12.5790 -5.5122 39 1 -0.2577 -11.0209 -3.5767 40 1 2.8268 -5.0936 -1.4963 41 1 1.8263 -3.7491 -2.1981 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091157533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:18 Heat of formation + Delta-G solvation = 17.995996 kcal Electronic energy + Delta-G solvation = -24727.151260 eV Core-core repulsion = 20994.783040 eV Total energy + Delta-G solvation = -3732.368220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.75949 -41.16563 -40.12982 -39.41400 -36.07732 -34.99890 -33.99774 -32.98702 -32.03390 -30.97146 -28.79442 -26.43380 -26.16327 -25.45737 -24.12720 -23.50388 -22.77881 -21.64876 -19.95610 -19.38008 -19.02397 -18.89694 -17.90543 -17.43526 -17.13503 -16.68609 -16.50376 -16.35256 -15.84208 -15.74756 -15.38713 -15.08473 -14.90811 -14.61735 -14.38781 -14.21296 -13.91965 -13.70770 -13.28162 -12.94289 -12.91969 -12.91398 -12.61830 -12.19381 -12.07403 -11.65216 -11.48863 -11.44703 -11.34128 -10.99529 -10.86730 -10.72635 -10.59292 -10.15560 -9.42613 -8.99081 -7.94055 -5.22488 -0.79857 0.04815 1.21901 1.48460 1.51252 1.56729 1.57317 1.60397 1.99111 2.56841 2.70634 3.03443 3.28679 3.38283 3.47395 3.71841 3.78079 3.79140 3.89519 4.00646 4.14212 4.24008 4.28841 4.32702 4.40732 4.57000 4.70495 4.71937 4.73472 4.86223 4.93235 4.98957 5.11463 5.18219 5.25028 5.32356 5.35310 5.46223 5.54124 5.66657 5.84718 6.29295 6.32399 6.67803 7.04366 7.34208 8.11582 8.33932 9.29094 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.002362 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.688307 B =11851.529160 C =12757.703373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.145 3.855 11 C -0.131 4.131 12 C -0.104 4.104 13 C 0.138 3.862 14 N -0.699 5.699 15 C 0.565 3.435 16 O -0.561 6.561 17 C 0.103 3.897 18 N -0.475 5.475 19 C 0.102 3.898 20 C -0.114 4.114 21 C 0.061 3.939 22 O -0.189 6.189 23 C 0.038 3.962 24 C -0.217 4.217 25 C -0.153 4.153 26 C -0.154 4.154 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.211 0.789 37 H 0.188 0.812 38 H 0.264 0.736 39 H 0.165 0.835 40 H 0.091 0.909 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -23.878 -14.889 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.035 3.965 11 C -0.171 4.171 12 C -0.123 4.123 13 C 0.016 3.984 14 N -0.349 5.349 15 C 0.350 3.650 16 O -0.440 6.440 17 C -0.039 4.039 18 N -0.188 5.188 19 C -0.052 4.052 20 C -0.134 4.134 21 C 0.006 3.994 22 O -0.089 6.089 23 C -0.026 4.026 24 C -0.237 4.237 25 C -0.158 4.158 26 C -0.195 4.195 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.228 0.772 37 H 0.205 0.795 38 H 0.280 0.720 39 H 0.183 0.817 40 H 0.110 0.890 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.304 -23.692 -14.278 27.858 hybrid contribution -0.250 0.747 -0.230 0.820 sum -3.554 -22.945 -14.508 27.379 Atomic orbital electron populations 1.69804 1.06586 1.26148 1.59445 1.25564 0.96391 1.01097 1.03751 0.85212 0.77186 0.79189 0.78179 1.20444 1.22243 1.20379 1.19642 0.91529 0.85196 1.41165 0.90546 1.42306 1.05322 1.00583 1.87591 1.21416 0.95139 0.84912 0.95046 1.23337 0.99953 0.98683 0.95098 1.22500 0.98379 0.93519 0.97913 1.21432 0.98479 0.95911 0.82621 1.45909 1.61402 1.08195 1.19364 1.17972 0.78517 0.83639 0.84855 1.90720 1.52621 1.38282 1.62331 1.20543 1.00099 0.88299 0.94997 1.67629 1.10691 1.30856 1.09663 1.23294 0.94017 0.98469 0.89460 1.21696 1.01174 0.87374 1.03147 1.20054 1.00032 0.85262 0.94023 1.84012 1.68566 1.14309 1.41995 1.25138 0.94669 0.98933 0.83850 1.22791 1.08407 0.89486 1.02999 1.20964 1.02916 0.95467 0.96404 1.23754 0.97257 0.99266 0.99224 0.94012 0.79393 0.91998 0.92246 0.87345 0.90299 0.91256 0.90773 0.74817 0.77238 0.79453 0.72009 0.81744 0.89021 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.24 -13.52 9.97 84.03 0.84 -12.68 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.72 -36.13 5.31 -320.15 -1.70 -37.83 16 10 C 0.14 5.62 4.57 45.58 0.21 5.82 16 11 C -0.13 -4.08 7.39 31.12 0.23 -3.85 16 12 C -0.10 -3.14 3.62 -10.27 -0.04 -3.18 16 13 C 0.14 3.74 5.50 86.38 0.47 4.21 16 14 N -0.70 -19.43 5.55 -466.04 -2.58 -22.01 16 15 C 0.56 16.95 7.80 86.77 0.68 17.63 16 16 O -0.56 -18.91 15.20 -3.91 -0.06 -18.97 16 17 C 0.10 2.76 6.78 42.00 0.28 3.05 16 18 N -0.48 -11.19 9.55 -184.55 -1.76 -12.96 16 19 C 0.10 1.60 11.13 84.76 0.94 2.55 16 20 C -0.11 -1.55 10.13 22.46 0.23 -1.32 16 21 C 0.06 1.16 7.48 23.11 0.17 1.34 16 22 O -0.19 -3.05 10.57 -5.17 -0.05 -3.10 16 23 C 0.04 0.47 11.97 66.92 0.80 1.28 16 24 C -0.22 -4.37 10.31 23.44 0.24 -4.13 16 25 C -0.15 -3.71 6.16 -20.04 -0.12 -3.84 16 26 C -0.15 -5.13 7.44 31.18 0.23 -4.89 16 27 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 28 H 0.37 20.13 7.90 -92.71 -0.73 19.40 16 29 H 0.06 2.39 8.10 -2.38 -0.02 2.37 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 2.72 8.10 -2.39 -0.02 2.70 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.07 1.96 7.87 -2.39 -0.02 1.94 16 35 H 0.42 11.24 7.81 -92.71 -0.72 10.52 16 36 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.26 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.17 3.50 7.29 -2.91 -0.02 3.48 16 40 H 0.09 2.62 7.92 -2.38 -0.02 2.60 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -74.12 353.75 1.41 -72.71 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.38 Total: 34.95 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.64 Total: -1.91 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -5.76 Total: -131.80 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.11 Total: -22.08 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -74.12 1.41 -72.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091157533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.707 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds