Wall clock time and date at job start Tue Mar 31 2020 10:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48499 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47668 * 299.99917 * 3 2 1 6 6 H 1.48499 * 109.46948 * 60.00224 * 3 2 1 7 7 C 1.38812 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99764 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83822 * 0.03037 * 9 7 2 11 11 H 1.09002 * 115.86055 * 0.33431 * 10 9 7 12 12 C 1.55849 * 101.04858 * 233.94277 * 10 9 7 13 13 C 1.56679 * 103.60190 * 326.83058 * 12 10 9 14 14 C 1.50238 * 130.83675 * 179.97438 * 9 7 2 15 15 H 1.08997 * 115.86246 * 359.66767 * 14 9 7 16 16 C 1.55846 * 101.04973 * 233.99034 * 14 9 7 17 17 H 1.09000 * 110.62568 * 208.41282 * 16 14 9 18 18 N 1.46501 * 110.62764 * 85.55648 * 16 14 9 19 19 C 1.34775 * 120.00233 * 155.00012 * 18 16 14 20 20 O 1.21729 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.46498 * 119.99860 * 180.02562 * 19 18 16 22 22 C 1.37778 * 125.85624 * 180.02562 * 21 19 18 23 23 C 1.39935 * 107.68533 * 180.02562 * 22 21 19 24 24 O 1.35120 * 145.13737 * 179.97438 * 23 22 21 25 25 C 1.34377 * 109.62046 * 179.97438 * 24 23 22 26 26 C 1.34455 * 109.44947 * 359.97438 * 25 24 23 27 27 C 1.39132 * 107.40332 * 0.02562 * 23 22 21 28 28 N 1.37103 * 108.11193 * 0.02562 * 27 23 22 29 29 H 0.96999 * 125.74442 * 180.02562 * 28 27 23 30 30 C 1.54848 * 103.44670 * 327.06481 * 16 14 9 31 31 H 0.96998 * 119.99939 * 0.02562 * 1 2 3 32 32 H 1.08995 * 110.61981 * 85.55462 * 12 10 9 33 33 H 1.09000 * 110.62198 * 208.41443 * 12 10 9 34 34 H 1.08995 * 111.44399 * 241.93903 * 13 12 10 35 35 H 1.09008 * 110.61572 * 118.35204 * 13 12 10 36 36 H 0.97000 * 119.99780 * 334.99513 * 18 16 14 37 37 H 1.08005 * 126.15708 * 0.27654 * 22 21 19 38 38 H 1.08002 * 125.27112 * 180.02562 * 25 24 23 39 39 H 1.07999 * 126.41310 * 180.02562 * 26 25 24 40 40 H 1.08997 * 110.62827 * 118.49402 * 30 16 14 41 41 H 1.09004 * 110.62515 * 241.50865 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6705 -0.0006 11 1 -0.8014 -1.7965 -0.0064 12 6 -0.2742 -3.6109 1.2360 13 6 1.0789 -4.4008 1.2356 14 6 1.8187 -3.8072 -0.0016 15 1 2.9012 -3.9344 -0.0081 16 6 1.0663 -4.3840 -1.2385 17 1 0.8949 -5.4538 -1.1192 18 7 1.8155 -4.1171 -2.4689 19 6 1.6508 -4.9128 -3.5442 20 8 0.8800 -5.8535 -3.4929 21 6 2.4005 -4.6462 -4.7743 22 6 2.3257 -5.3776 -5.9395 23 6 3.1971 -4.7928 -6.8652 24 8 3.6904 -4.8629 -8.1211 25 6 4.5703 -3.8662 -8.3166 26 6 4.6676 -3.1288 -7.1966 27 6 3.7959 -3.7025 -6.2418 28 7 3.3052 -3.6196 -4.9642 29 1 3.5508 -2.9516 -4.3052 30 6 -0.2747 -3.6097 -1.2376 31 1 -0.4850 0.8400 -0.0004 32 1 -0.3816 -3.0291 2.1514 33 1 -1.1150 -4.2941 1.1158 34 1 0.9155 -5.4709 1.1081 35 1 1.6391 -4.2029 2.1495 36 1 2.4300 -3.3677 -2.5096 37 1 1.7032 -6.2437 -6.1094 38 1 5.1142 -3.6852 -9.2319 39 1 5.2950 -2.2617 -7.0524 40 1 -0.3824 -3.0272 -2.1525 41 1 -1.1137 -4.2950 -1.1166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097163670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:15 Heat of formation + Delta-G solvation = 74.638209 kcal Electronic energy + Delta-G solvation = -26168.572131 eV Core-core repulsion = 22438.660102 eV Total energy + Delta-G solvation = -3729.912029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.97442 -40.19165 -39.18832 -37.93711 -33.97329 -32.61765 -32.43149 -30.64670 -29.19992 -29.16658 -28.52585 -27.39748 -24.36912 -23.64120 -21.73442 -21.19787 -20.72619 -19.94794 -19.69355 -18.83611 -18.25260 -17.11187 -17.04335 -16.31547 -16.05443 -15.42431 -14.93960 -14.72805 -14.54781 -13.99326 -13.82256 -13.72279 -13.43464 -13.20384 -12.95878 -12.81045 -12.12044 -11.91600 -11.81413 -11.33589 -11.19869 -11.01496 -10.99438 -10.60225 -10.41872 -10.16856 -10.15759 -10.06663 -9.94176 -9.37883 -9.26091 -9.06343 -8.67269 -8.64219 -7.90975 -7.03968 -5.83702 -3.23326 0.98264 2.19999 2.44123 2.60982 2.86898 3.28391 3.33362 3.36989 3.45697 3.51756 4.31741 4.49360 4.72377 4.97839 5.04980 5.19330 5.26848 5.41469 5.44727 5.56038 5.59974 5.74082 5.79288 5.97581 6.01370 6.03375 6.09740 6.20982 6.23861 6.33781 6.41383 6.49542 6.55733 6.66041 6.75919 6.88304 7.00224 7.07097 7.22973 7.27214 7.38131 7.70733 7.80465 8.08798 8.37909 8.97966 9.61235 10.42390 11.25138 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.004080 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.595071 B = 6860.427690 C = 8466.518454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.153 3.847 11 H 0.154 0.846 12 C -0.137 4.137 13 C -0.129 4.129 14 C 0.125 3.875 15 H 0.086 0.914 16 C 0.128 3.872 17 H 0.085 0.915 18 N -0.701 5.701 19 C 0.583 3.417 20 O -0.532 6.532 21 C 0.017 3.983 22 C -0.088 4.088 23 C -0.040 4.040 24 O -0.170 6.170 25 C 0.005 3.995 26 C -0.200 4.200 27 C 0.008 3.992 28 N -0.529 5.529 29 H 0.423 0.577 30 C -0.144 4.144 31 H 0.254 0.746 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.159 0.841 38 H 0.211 0.789 39 H 0.153 0.847 40 H 0.060 0.940 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.179 -7.260 -10.098 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.312 5.312 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.016 3.984 15 H 0.104 0.896 16 C 0.022 3.978 17 H 0.103 0.897 18 N -0.349 5.349 19 C 0.369 3.631 20 O -0.410 6.410 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.092 4.092 24 O -0.068 6.068 25 C -0.063 4.063 26 C -0.221 4.221 27 C -0.106 4.106 28 N -0.133 5.133 29 H 0.262 0.738 30 C -0.184 4.184 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.232 0.768 37 H 0.177 0.823 38 H 0.227 0.773 39 H 0.171 0.829 40 H 0.078 0.922 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.579 -7.711 -10.091 14.303 hybrid contribution 1.086 1.826 0.314 2.147 sum 7.665 -5.886 -9.777 13.748 Atomic orbital electron populations 1.69468 1.05002 1.24978 1.56983 1.24709 0.95591 0.97493 1.02657 0.86014 0.78514 0.83650 0.77346 1.20641 1.21826 1.21691 1.19026 0.90183 0.81894 1.43468 0.90406 1.46543 1.01697 0.98540 1.84433 1.23768 0.87350 0.95331 0.88877 0.82942 1.23360 0.95103 0.98063 1.01124 1.23197 0.97741 0.97599 0.98392 1.23158 0.96017 0.86988 0.92252 0.89569 1.22740 0.92868 0.98979 0.83175 0.89734 1.45918 1.45124 1.30940 1.12937 1.16857 0.81706 0.82955 0.81582 1.90840 1.37220 1.30232 1.82666 1.20488 0.99074 0.93141 0.96866 1.19856 1.01342 1.02329 0.88015 1.19294 1.04440 1.00854 0.84629 1.84008 1.48919 1.45938 1.27919 1.23995 0.94218 0.88136 0.99919 1.20571 1.04848 1.04712 0.91981 1.19018 1.03344 1.00970 0.87257 1.41251 1.35019 1.26152 1.10849 0.73817 1.23470 0.94882 0.98451 1.01611 0.93493 0.92581 0.93249 0.92671 0.92366 0.76790 0.82295 0.77294 0.82943 0.92165 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.99 10.46 55.49 0.58 -24.41 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -5.46 10.59 -15.06 -0.16 -5.62 16 8 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.59 -13.40 2.99 -145.81 -0.44 -13.84 16 10 C 0.15 3.37 4.72 -62.82 -0.30 3.07 16 11 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 12 C -0.14 -2.62 6.49 -23.22 -0.15 -2.77 16 13 C -0.13 -2.25 6.58 -23.20 -0.15 -2.40 16 14 C 0.12 2.31 5.01 -62.78 -0.31 2.00 16 15 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 16 C 0.13 2.30 2.80 -65.44 -0.18 2.11 16 17 H 0.08 1.51 7.21 -51.93 -0.37 1.13 16 18 N -0.70 -11.59 5.07 -52.75 -0.27 -11.86 16 19 C 0.58 9.85 7.78 -12.93 -0.10 9.75 16 20 O -0.53 -10.40 16.51 5.16 0.09 -10.32 16 21 C 0.02 0.26 7.03 -81.86 -0.58 -0.32 16 22 C -0.09 -1.28 10.58 -39.11 -0.41 -1.70 16 23 C -0.04 -0.57 8.20 -38.61 -0.32 -0.89 16 24 O -0.17 -2.13 10.68 3.21 0.03 -2.10 16 25 C 0.01 0.05 12.02 29.40 0.35 0.40 16 26 C -0.20 -2.05 10.89 -39.70 -0.43 -2.48 16 27 C 0.01 0.10 8.11 -83.96 -0.68 -0.58 16 28 N -0.53 -6.91 6.08 -7.04 -0.04 -6.95 16 29 H 0.42 4.72 8.16 -40.82 -0.33 4.39 16 30 C -0.14 -2.84 6.23 -24.26 -0.15 -2.99 16 31 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 34 H 0.05 0.84 7.81 -51.93 -0.41 0.44 16 35 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 36 H 0.40 6.23 7.75 -40.82 -0.32 5.91 16 37 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 41 H 0.06 1.04 7.82 -51.93 -0.41 0.64 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -30.52 339.97 -8.64 -39.17 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.02 Total: 12.20 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.67 Total: -2.73 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.17 Total: -57.06 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.12 Total: -12.42 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.52 -8.64 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097163670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.803 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds