Wall clock time and date at job start Tue Mar 31 2020 10:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48499 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47668 * 299.99917 * 3 2 1 6 6 H 1.48499 * 109.46948 * 60.00224 * 3 2 1 7 7 C 1.38812 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99764 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83822 * 0.03037 * 9 7 2 11 11 H 1.09002 * 115.86055 * 0.33431 * 10 9 7 12 12 C 1.55849 * 101.04858 * 233.94277 * 10 9 7 13 13 C 1.56679 * 103.60190 * 326.83058 * 12 10 9 14 14 C 1.50238 * 130.83675 * 179.97438 * 9 7 2 15 15 H 1.08997 * 115.86246 * 359.66767 * 14 9 7 16 16 C 1.55846 * 101.04973 * 233.99034 * 14 9 7 17 17 H 1.09000 * 110.62568 * 208.41282 * 16 14 9 18 18 N 1.46501 * 110.62764 * 85.55648 * 16 14 9 19 19 C 1.34775 * 120.00233 * 155.00012 * 18 16 14 20 20 O 1.21729 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.46498 * 119.99860 * 180.02562 * 19 18 16 22 22 C 1.37778 * 125.85624 * 180.02562 * 21 19 18 23 23 C 1.39935 * 107.68533 * 180.02562 * 22 21 19 24 24 O 1.35120 * 145.13737 * 179.97438 * 23 22 21 25 25 C 1.34377 * 109.62046 * 179.97438 * 24 23 22 26 26 C 1.34455 * 109.44947 * 359.97438 * 25 24 23 27 27 C 1.39132 * 107.40332 * 0.02562 * 23 22 21 28 28 N 1.37103 * 108.11193 * 0.02562 * 27 23 22 29 29 H 0.96999 * 125.74442 * 180.02562 * 28 27 23 30 30 C 1.54848 * 103.44670 * 327.06481 * 16 14 9 31 31 H 0.96998 * 119.99939 * 0.02562 * 1 2 3 32 32 H 1.08995 * 110.61981 * 85.55462 * 12 10 9 33 33 H 1.09000 * 110.62198 * 208.41443 * 12 10 9 34 34 H 1.08995 * 111.44399 * 241.93903 * 13 12 10 35 35 H 1.09008 * 110.61572 * 118.35204 * 13 12 10 36 36 H 0.97000 * 119.99780 * 334.99513 * 18 16 14 37 37 H 1.08005 * 126.15708 * 0.27654 * 22 21 19 38 38 H 1.08002 * 125.27112 * 180.02562 * 25 24 23 39 39 H 1.07999 * 126.41310 * 180.02562 * 26 25 24 40 40 H 1.08997 * 110.62827 * 118.49402 * 30 16 14 41 41 H 1.09004 * 110.62515 * 241.50865 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6705 -0.0006 11 1 -0.8014 -1.7965 -0.0064 12 6 -0.2742 -3.6109 1.2360 13 6 1.0789 -4.4008 1.2356 14 6 1.8187 -3.8072 -0.0016 15 1 2.9012 -3.9344 -0.0081 16 6 1.0663 -4.3840 -1.2385 17 1 0.8949 -5.4538 -1.1192 18 7 1.8155 -4.1171 -2.4689 19 6 1.6508 -4.9128 -3.5442 20 8 0.8800 -5.8535 -3.4929 21 6 2.4005 -4.6462 -4.7743 22 6 2.3257 -5.3776 -5.9395 23 6 3.1971 -4.7928 -6.8652 24 8 3.6904 -4.8629 -8.1211 25 6 4.5703 -3.8662 -8.3166 26 6 4.6676 -3.1288 -7.1966 27 6 3.7959 -3.7025 -6.2418 28 7 3.3052 -3.6196 -4.9642 29 1 3.5508 -2.9516 -4.3052 30 6 -0.2747 -3.6097 -1.2376 31 1 -0.4850 0.8400 -0.0004 32 1 -0.3816 -3.0291 2.1514 33 1 -1.1150 -4.2941 1.1158 34 1 0.9155 -5.4709 1.1081 35 1 1.6391 -4.2029 2.1495 36 1 2.4300 -3.3677 -2.5096 37 1 1.7032 -6.2437 -6.1094 38 1 5.1142 -3.6852 -9.2319 39 1 5.2950 -2.2617 -7.0524 40 1 -0.3824 -3.0272 -2.1525 41 1 -1.1137 -4.2950 -1.1166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097163670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:14 Heat of formation + Delta-G solvation = 55.159960 kcal Electronic energy + Delta-G solvation = -26169.416771 eV Core-core repulsion = 22438.660102 eV Total energy + Delta-G solvation = -3730.756670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.91411 -41.49257 -40.50393 -39.26819 -35.43781 -34.43163 -33.32392 -31.70203 -30.96217 -30.57629 -29.92892 -28.66903 -26.15904 -24.83685 -22.74483 -22.52274 -21.73422 -21.53998 -21.03837 -20.33496 -19.34456 -18.85817 -18.10196 -17.41677 -17.26241 -16.78346 -16.51565 -16.07563 -15.90737 -15.59684 -15.11171 -14.96110 -14.54007 -14.38629 -14.30201 -13.73086 -13.68158 -13.65335 -12.92560 -12.91069 -12.79663 -12.78511 -12.70363 -12.11022 -11.95761 -11.89069 -11.70848 -11.45523 -11.07936 -11.05079 -10.96820 -10.78952 -10.10375 -9.66814 -8.91868 -8.86131 -7.77091 -5.17093 -0.05521 1.20531 1.46999 1.48766 1.48941 1.57103 1.68237 1.82117 2.22317 2.32613 2.48648 3.36262 3.44560 3.60193 3.73928 3.95619 3.99507 4.05924 4.25151 4.30369 4.44086 4.46084 4.49800 4.62489 4.66288 4.72330 4.75842 4.82524 4.90796 5.02303 5.04718 5.16511 5.18541 5.37217 5.42573 5.46833 5.52096 5.58317 5.69622 5.88797 6.12602 6.26492 6.28999 6.49548 7.03764 7.05975 7.71584 8.57394 9.30270 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.004080 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.595071 B = 6860.427690 C = 8466.518454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.301 1.301 7 C -0.213 4.213 8 H 0.087 0.913 9 N -0.610 5.610 10 C 0.139 3.861 11 H 0.116 0.884 12 C -0.131 4.131 13 C -0.120 4.120 14 C 0.127 3.873 15 H 0.102 0.898 16 C 0.139 3.861 17 H 0.094 0.906 18 N -0.698 5.698 19 C 0.588 3.412 20 O -0.563 6.563 21 C -0.007 4.007 22 C -0.090 4.090 23 C -0.073 4.073 24 O -0.183 6.183 25 C 0.031 3.969 26 C -0.219 4.219 27 C 0.009 3.991 28 N -0.523 5.523 29 H 0.430 0.570 30 C -0.134 4.134 31 H 0.245 0.755 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.402 0.598 37 H 0.162 0.838 38 H 0.262 0.738 39 H 0.180 0.820 40 H 0.034 0.966 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 -7.976 -11.291 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.228 1.228 7 C -0.342 4.342 8 H 0.105 0.895 9 N -0.331 5.331 10 C 0.032 3.968 11 H 0.133 0.867 12 C -0.170 4.170 13 C -0.159 4.159 14 C 0.019 3.981 15 H 0.120 0.880 16 C 0.033 3.967 17 H 0.112 0.888 18 N -0.346 5.346 19 C 0.376 3.624 20 O -0.443 6.443 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.124 4.124 24 O -0.081 6.081 25 C -0.036 4.036 26 C -0.240 4.240 27 C -0.106 4.106 28 N -0.128 5.128 29 H 0.270 0.730 30 C -0.175 4.175 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.237 0.763 37 H 0.179 0.821 38 H 0.278 0.722 39 H 0.197 0.803 40 H 0.052 0.948 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.945 -8.449 -11.271 16.686 hybrid contribution 0.422 2.023 0.541 2.136 sum 9.367 -6.426 -10.730 15.626 Atomic orbital electron populations 1.69725 1.06231 1.24676 1.59041 1.25409 0.96257 1.00283 1.03907 0.85089 0.78323 0.80211 0.76170 1.18881 1.22698 1.22843 1.19384 0.90781 0.82872 1.41170 0.89524 1.46725 1.02240 0.99621 1.84562 1.23595 0.86795 0.95131 0.91233 0.86706 1.23256 0.97259 0.97840 0.98689 1.23162 0.96118 0.98948 0.97714 1.23361 0.97121 0.84650 0.92940 0.87971 1.22571 0.91740 0.98947 0.83464 0.88786 1.45820 1.45005 1.31090 1.12657 1.17003 0.81201 0.82262 0.81930 1.90811 1.38667 1.31526 1.83277 1.20108 1.00721 0.94740 0.96350 1.20000 1.01214 1.02245 0.88305 1.19371 1.05566 1.01823 0.85688 1.84022 1.49716 1.47291 1.27116 1.25098 0.91750 0.85634 1.01076 1.21017 1.05337 1.06157 0.91458 1.19591 1.03115 1.00742 0.87114 1.41176 1.34556 1.25819 1.11217 0.72989 1.23333 0.96725 0.98093 0.99335 0.94563 0.94357 0.91052 0.89612 0.92097 0.76279 0.82059 0.72233 0.80303 0.94757 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.48 10.46 21.65 0.23 -53.25 16 2 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.97 43.16 29.55 68.60 2.03 45.19 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.21 -10.65 10.59 84.03 0.89 -9.76 16 8 H 0.09 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.61 -27.50 2.99 -615.23 -1.84 -29.34 16 10 C 0.14 6.19 4.72 46.22 0.22 6.41 16 11 H 0.12 6.11 5.52 -2.39 -0.01 6.10 16 12 C -0.13 -4.89 6.49 32.87 0.21 -4.68 16 13 C -0.12 -3.87 6.58 32.88 0.22 -3.65 16 14 C 0.13 4.48 5.01 46.24 0.23 4.71 16 15 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 16 C 0.14 4.81 2.80 46.61 0.13 4.94 16 17 H 0.09 3.15 7.21 -2.39 -0.02 3.13 16 18 N -0.70 -22.69 5.07 -439.01 -2.23 -24.91 16 19 C 0.59 19.82 7.78 86.40 0.67 20.49 16 20 O -0.56 -22.01 16.51 -4.44 -0.07 -22.09 16 21 C -0.01 -0.20 7.03 40.19 0.28 0.09 16 22 C -0.09 -2.63 10.58 22.57 0.24 -2.39 16 23 C -0.07 -2.01 8.20 22.90 0.19 -1.83 16 24 O -0.18 -4.21 10.68 -11.44 -0.12 -4.33 16 25 C 0.03 0.45 12.02 66.95 0.80 1.25 16 26 C -0.22 -3.81 10.89 22.19 0.24 -3.57 16 27 C 0.01 0.22 8.11 39.32 0.32 0.54 16 28 N -0.52 -13.29 6.08 -176.20 -1.07 -14.37 16 29 H 0.43 9.26 8.16 -92.71 -0.76 8.51 16 30 C -0.13 -5.32 6.23 32.20 0.20 -5.12 16 31 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 2.32 7.82 -2.39 -0.02 2.30 16 34 H 0.09 2.29 7.81 -2.39 -0.02 2.27 16 35 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.40 12.36 7.75 -92.71 -0.72 11.64 16 37 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.26 0.70 8.06 -2.91 -0.02 0.67 16 39 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.03 1.50 7.98 -2.39 -0.02 1.48 16 41 H 0.07 2.53 7.82 -2.38 -0.02 2.51 16 Total: -1.00 -67.82 339.97 1.85 -65.97 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -0.38 Total: 32.71 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.31 Total: 4.43 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -4.91 Total: -121.88 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.20 Total: -26.42 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.82 1.85 -65.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097163670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.131 kcal (2) G-P(sol) polarization free energy of solvation -67.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds