Wall clock time and date at job start Tue Mar 31 2020 10:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47113 * 269.99635 * 3 2 1 5 5 H 1.48502 * 109.47417 * 29.99758 * 3 2 1 6 6 H 1.48506 * 109.47523 * 149.99871 * 3 2 1 7 7 C 1.37877 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00115 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.46873 * 175.30820 * 9 7 2 11 11 C 1.46897 * 110.99479 * 198.87175 * 10 9 7 12 12 C 1.50703 * 109.47457 * 66.04524 * 11 10 9 13 13 C 1.38235 * 119.99971 * 269.72819 * 12 11 10 14 14 C 1.38231 * 119.99986 * 179.76803 * 13 12 11 15 15 C 1.38238 * 119.99844 * 0.49769 * 14 13 12 16 16 C 1.38233 * 120.00178 * 359.75424 * 15 14 13 17 17 C 1.38234 * 119.99931 * 359.97438 * 16 15 14 18 18 C 1.46891 * 110.99957 * 74.91861 * 10 9 7 19 19 C 1.50707 * 109.46759 * 199.50989 * 18 10 9 20 20 C 1.38178 * 120.01227 * 254.81408 * 19 18 10 21 21 C 1.38429 * 120.02796 * 180.02562 * 20 19 18 22 22 F 1.35104 * 119.97034 * 179.97438 * 21 20 19 23 23 C 1.38470 * 120.06139 * 359.97438 * 21 20 19 24 24 C 1.38137 * 120.03296 * 359.71524 * 23 21 20 25 25 C 1.38681 * 120.01566 * 74.83746 * 19 18 10 26 26 O 1.35942 * 120.03427 * 359.97438 * 25 19 18 27 27 H 0.97004 * 120.00248 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47100 * 55.30206 * 9 7 2 29 29 H 1.08998 * 109.46759 * 295.30278 * 9 7 2 30 30 H 1.08998 * 109.46994 * 186.04612 * 11 10 9 31 31 H 1.09000 * 109.47241 * 306.04049 * 11 10 9 32 32 H 1.08002 * 119.99741 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.00456 * 180.23063 * 14 13 12 34 34 H 1.08001 * 119.99901 * 179.72301 * 15 14 13 35 35 H 1.08000 * 120.00634 * 179.97438 * 16 15 14 36 36 H 1.08000 * 120.00566 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.47366 * 79.51068 * 18 10 9 38 38 H 1.08999 * 109.47628 * 319.50266 * 18 10 9 39 39 H 1.08001 * 119.98264 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.98300 * 180.02562 * 23 21 20 41 41 H 1.07991 * 120.01687 * 180.30575 * 24 23 21 42 42 H 0.96701 * 113.99475 * 89.99803 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5743 0.1149 11 6 5.4000 -2.6014 0.5628 12 6 5.4868 -2.0729 1.9714 13 6 5.6899 -0.7234 2.1920 14 6 5.7647 -0.2379 3.4841 15 6 5.6468 -1.1034 4.5556 16 6 5.4489 -2.4536 4.3350 17 6 5.3685 -2.9383 3.0429 18 6 3.8408 -3.2961 -1.1544 19 6 3.8881 -4.7804 -0.8976 20 6 5.0149 -5.5048 -1.2366 21 6 5.0586 -6.8683 -1.0014 22 9 6.1606 -7.5755 -1.3339 23 6 3.9738 -7.5079 -0.4257 24 6 2.8486 -6.7851 -0.0799 25 6 2.8008 -5.4198 -0.3214 26 8 1.6916 -4.7083 0.0127 27 1 -0.4851 0.8401 -0.0004 28 1 3.8746 -0.6088 0.8460 29 1 3.8752 -0.7549 -0.9279 30 1 5.7704 -3.6261 0.5357 31 1 6.0048 -1.9790 -0.0968 32 1 5.7867 -0.0480 1.3549 33 1 5.9197 0.8169 3.6566 34 1 5.7098 -0.7247 5.5651 35 1 5.3572 -3.1299 5.1720 36 1 5.2143 -3.9932 2.8704 37 1 4.6464 -3.0191 -1.8343 38 1 2.8817 -3.0354 -1.6020 39 1 5.8618 -5.0070 -1.6853 40 1 4.0094 -8.5717 -0.2424 41 1 2.0046 -7.2834 0.3736 42 1 1.0333 -4.6517 -0.6933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140052924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:29 Heat of formation + Delta-G solvation = -25.141353 kcal Electronic energy + Delta-G solvation = -26209.300181 eV Core-core repulsion = 22455.141424 eV Total energy + Delta-G solvation = -3754.158757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.80947 -39.73954 -38.94319 -36.52072 -36.05190 -32.58607 -32.10073 -30.77755 -30.50578 -29.17277 -27.79315 -26.15405 -23.88935 -22.61304 -22.29601 -21.46487 -21.11500 -19.82508 -18.02919 -17.08918 -16.87680 -16.52738 -16.32055 -15.63792 -15.20507 -15.00498 -14.89089 -14.60664 -14.28617 -14.02972 -13.74397 -13.56486 -13.25880 -13.07208 -12.90368 -12.46859 -12.27512 -12.10377 -11.98127 -11.75758 -11.60788 -11.43601 -11.08739 -10.71697 -10.67215 -10.58031 -10.30694 -9.97691 -9.80990 -9.27599 -8.90354 -8.57635 -8.45658 -8.34859 -8.21054 -7.39796 -6.00344 -3.95084 1.21720 1.25254 1.73800 1.79449 3.28252 3.36912 3.37821 3.56081 4.12225 4.31059 4.44614 4.52620 4.76832 4.89491 5.01109 5.16612 5.18954 5.23730 5.32600 5.35108 5.45354 5.46072 5.64392 5.80050 5.85566 5.87769 5.97533 5.98919 6.02229 6.15703 6.23833 6.33750 6.37350 6.41592 6.62605 6.80628 6.82548 6.84998 6.88019 6.92251 7.05524 7.37844 7.66295 7.88978 7.97752 8.12808 8.70952 9.15825 9.62711 11.12792 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010455 B = 0.005395 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.534254 B = 5188.708188 C = 6824.830002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.865 3.135 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.153 3.847 10 N -0.503 5.503 11 C 0.087 3.913 12 C -0.060 4.060 13 C -0.107 4.107 14 C -0.124 4.124 15 C -0.127 4.127 16 C -0.125 4.125 17 C -0.096 4.096 18 C 0.103 3.897 19 C -0.068 4.068 20 C -0.138 4.138 21 C 0.076 3.924 22 F -0.146 7.146 23 C -0.144 4.144 24 C -0.127 4.127 25 C 0.134 3.866 26 O -0.467 6.467 27 H 0.261 0.739 28 H 0.041 0.959 29 H -0.019 1.019 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.032 0.968 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.550 -10.225 0.699 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.693 3.307 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.536 4.536 8 H 0.109 0.891 9 C 0.027 3.973 10 N -0.227 5.227 11 C -0.041 4.041 12 C -0.061 4.061 13 C -0.126 4.126 14 C -0.142 4.142 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.025 4.025 19 C -0.069 4.069 20 C -0.158 4.158 21 C 0.057 3.943 22 F -0.125 7.125 23 C -0.164 4.164 24 C -0.146 4.146 25 C 0.088 3.912 26 O -0.277 6.277 27 H 0.071 0.929 28 H 0.059 0.941 29 H -0.002 1.002 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.422 -10.268 1.566 14.714 hybrid contribution 0.732 1.270 -1.015 1.782 sum 11.153 -8.998 0.551 14.341 Atomic orbital electron populations 1.69876 1.05983 1.26526 1.51769 1.24857 0.94651 0.98476 0.95274 0.87013 0.80651 0.84740 0.78269 1.20571 1.21296 1.19091 1.21112 0.88534 0.94968 1.48993 0.89094 1.20412 0.97572 0.84129 0.95156 1.61950 1.15180 1.17918 1.27619 1.21108 0.91290 0.99774 0.91937 1.19716 0.97836 0.93312 0.95217 1.21059 0.99578 0.95006 0.96908 1.21032 1.01066 0.99291 0.92788 1.21020 1.01301 0.93731 0.98450 1.21046 1.01018 0.95503 0.96740 1.20933 0.98880 0.99588 0.92056 1.20872 1.02623 0.87637 0.91336 1.20300 0.92997 0.97006 0.96628 1.20955 0.99282 0.92126 1.03435 1.17590 0.84262 0.89901 1.02519 1.91467 1.51626 1.78638 1.90750 1.20898 0.92985 1.00601 1.01873 1.21321 0.98699 0.93409 1.01123 1.18350 0.88921 0.88766 0.95182 1.85033 1.28039 1.73246 1.41392 0.92880 0.94074 1.00154 0.90974 0.95129 0.86600 0.86639 0.86703 0.86579 0.86431 0.94990 0.88069 0.85019 0.84992 0.84706 0.75414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 21.24 27.56 -169.99 -4.69 16.55 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.26 6.41 56.52 0.36 -5.90 16 7 C -0.50 -13.56 9.05 -34.44 -0.31 -13.88 16 8 H 0.09 2.65 7.41 -52.49 -0.39 2.26 16 9 C 0.15 3.57 3.67 -4.97 -0.02 3.55 16 10 N -0.50 -10.01 4.34 -238.96 -1.04 -11.05 16 11 C 0.09 1.49 4.94 -4.98 -0.02 1.47 16 12 C -0.06 -1.07 4.94 -104.62 -0.52 -1.58 16 13 C -0.11 -1.87 7.86 -39.58 -0.31 -2.18 16 14 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 15 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 16 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 17 C -0.10 -1.59 9.70 -39.58 -0.38 -1.97 16 18 C 0.10 1.79 4.55 -4.98 -0.02 1.77 16 19 C -0.07 -1.04 4.82 -104.48 -0.50 -1.54 16 20 C -0.14 -1.88 8.97 -39.53 -0.35 -2.23 16 21 C 0.08 1.00 7.30 -39.43 -0.29 0.72 16 22 F -0.15 -1.94 17.27 2.25 0.04 -1.90 16 23 C -0.14 -1.73 10.02 -39.53 -0.40 -2.13 16 24 C -0.13 -1.62 9.99 -39.44 -0.39 -2.01 16 25 C 0.13 2.03 6.68 -39.24 -0.26 1.77 16 26 O -0.47 -7.93 12.29 -19.56 -0.24 -8.17 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.04 0.99 3.74 -51.93 -0.19 0.80 16 29 H -0.02 -0.44 7.67 -51.93 -0.40 -0.84 16 30 H 0.07 1.14 6.82 -51.93 -0.35 0.79 16 31 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.12 2.01 7.67 -52.49 -0.40 1.60 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.03 0.51 7.81 -51.93 -0.41 0.10 16 38 H 0.10 1.93 7.07 -51.93 -0.37 1.56 16 39 H 0.13 1.60 8.00 -52.49 -0.42 1.18 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.39 5.17 9.06 45.56 0.41 5.59 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -31.59 354.12 -9.54 -41.13 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.65 Total: 7.73 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -5.08 Total: -23.31 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.26 Total: -37.36 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.24 Total: -8.17 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.69 Total: 16.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.59 -9.54 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140052924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.985 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds