Wall clock time and date at job start Tue Mar 31 2020 10:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47113 * 269.99635 * 3 2 1 5 5 H 1.48502 * 109.47417 * 29.99758 * 3 2 1 6 6 H 1.48506 * 109.47523 * 149.99871 * 3 2 1 7 7 C 1.37877 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00115 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.46873 * 175.30820 * 9 7 2 11 11 C 1.46897 * 110.99479 * 198.87175 * 10 9 7 12 12 C 1.50703 * 109.47457 * 66.04524 * 11 10 9 13 13 C 1.38235 * 119.99971 * 269.72819 * 12 11 10 14 14 C 1.38231 * 119.99986 * 179.76803 * 13 12 11 15 15 C 1.38238 * 119.99844 * 0.49769 * 14 13 12 16 16 C 1.38233 * 120.00178 * 359.75424 * 15 14 13 17 17 C 1.38234 * 119.99931 * 359.97438 * 16 15 14 18 18 C 1.46891 * 110.99957 * 74.91861 * 10 9 7 19 19 C 1.50707 * 109.46759 * 199.50989 * 18 10 9 20 20 C 1.38178 * 120.01227 * 254.81408 * 19 18 10 21 21 C 1.38429 * 120.02796 * 180.02562 * 20 19 18 22 22 F 1.35104 * 119.97034 * 179.97438 * 21 20 19 23 23 C 1.38470 * 120.06139 * 359.97438 * 21 20 19 24 24 C 1.38137 * 120.03296 * 359.71524 * 23 21 20 25 25 C 1.38681 * 120.01566 * 74.83746 * 19 18 10 26 26 O 1.35942 * 120.03427 * 359.97438 * 25 19 18 27 27 H 0.97004 * 120.00248 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47100 * 55.30206 * 9 7 2 29 29 H 1.08998 * 109.46759 * 295.30278 * 9 7 2 30 30 H 1.08998 * 109.46994 * 186.04612 * 11 10 9 31 31 H 1.09000 * 109.47241 * 306.04049 * 11 10 9 32 32 H 1.08002 * 119.99741 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.00456 * 180.23063 * 14 13 12 34 34 H 1.08001 * 119.99901 * 179.72301 * 15 14 13 35 35 H 1.08000 * 120.00634 * 179.97438 * 16 15 14 36 36 H 1.08000 * 120.00566 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.47366 * 79.51068 * 18 10 9 38 38 H 1.08999 * 109.47628 * 319.50266 * 18 10 9 39 39 H 1.08001 * 119.98264 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.98300 * 180.02562 * 23 21 20 41 41 H 1.07991 * 120.01687 * 180.30575 * 24 23 21 42 42 H 0.96701 * 113.99475 * 89.99803 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5743 0.1149 11 6 5.4000 -2.6014 0.5628 12 6 5.4868 -2.0729 1.9714 13 6 5.6899 -0.7234 2.1920 14 6 5.7647 -0.2379 3.4841 15 6 5.6468 -1.1034 4.5556 16 6 5.4489 -2.4536 4.3350 17 6 5.3685 -2.9383 3.0429 18 6 3.8408 -3.2961 -1.1544 19 6 3.8881 -4.7804 -0.8976 20 6 5.0149 -5.5048 -1.2366 21 6 5.0586 -6.8683 -1.0014 22 9 6.1606 -7.5755 -1.3339 23 6 3.9738 -7.5079 -0.4257 24 6 2.8486 -6.7851 -0.0799 25 6 2.8008 -5.4198 -0.3214 26 8 1.6916 -4.7083 0.0127 27 1 -0.4851 0.8401 -0.0004 28 1 3.8746 -0.6088 0.8460 29 1 3.8752 -0.7549 -0.9279 30 1 5.7704 -3.6261 0.5357 31 1 6.0048 -1.9790 -0.0968 32 1 5.7867 -0.0480 1.3549 33 1 5.9197 0.8169 3.6566 34 1 5.7098 -0.7247 5.5651 35 1 5.3572 -3.1299 5.1720 36 1 5.2143 -3.9932 2.8704 37 1 4.6464 -3.0191 -1.8343 38 1 2.8817 -3.0354 -1.6020 39 1 5.8618 -5.0070 -1.6853 40 1 4.0094 -8.5717 -0.2424 41 1 2.0046 -7.2834 0.3736 42 1 1.0333 -4.6517 -0.6933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140052924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:28 Heat of formation + Delta-G solvation = -44.530822 kcal Electronic energy + Delta-G solvation = -26210.140971 eV Core-core repulsion = 22455.141424 eV Total energy + Delta-G solvation = -3754.999548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.84436 -40.93280 -40.15684 -37.96178 -37.24996 -34.64129 -33.28946 -32.16066 -31.71454 -30.37461 -29.50193 -27.40665 -25.48846 -23.72240 -23.54638 -22.93402 -22.33993 -21.29428 -19.24229 -18.84846 -18.15163 -17.77430 -17.49330 -16.87989 -16.52785 -16.24015 -16.19577 -16.04029 -15.88690 -15.31722 -15.11820 -14.71935 -14.55714 -14.42461 -14.24551 -14.01501 -13.64092 -13.41543 -13.36564 -13.20681 -12.98929 -12.64918 -12.59683 -12.48825 -12.00199 -11.90423 -11.77504 -11.70676 -11.34925 -11.17749 -10.70351 -10.00237 -9.72882 -9.59396 -9.32685 -8.94077 -8.18238 -6.16675 0.12993 0.19706 0.51600 0.56702 1.33100 1.36363 1.44846 2.39144 2.47041 2.87835 3.14982 3.23521 3.42168 3.53695 3.77141 3.83504 3.93276 3.99976 4.13446 4.20249 4.29813 4.35511 4.41975 4.51235 4.59576 4.67395 4.71704 4.81175 4.93021 4.96769 4.99457 5.04054 5.14381 5.17661 5.19332 5.21781 5.55345 5.60653 5.65201 5.67305 5.78541 5.83889 6.09416 6.18234 6.41143 6.71834 6.94458 6.99194 7.44670 8.97709 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010455 B = 0.005395 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.534254 B = 5188.708188 C = 6824.830002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.250 1.250 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.164 3.836 10 N -0.517 5.517 11 C 0.091 3.909 12 C -0.082 4.082 13 C -0.129 4.129 14 C -0.133 4.133 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.111 4.111 18 C 0.107 3.893 19 C -0.082 4.082 20 C -0.135 4.135 21 C 0.073 3.927 22 F -0.145 7.145 23 C -0.131 4.131 24 C -0.122 4.122 25 C 0.115 3.885 26 O -0.495 6.495 27 H 0.261 0.739 28 H 0.038 0.962 29 H -0.019 1.019 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 -11.034 1.690 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.186 4.186 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.174 1.174 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.037 3.963 10 N -0.240 5.240 11 C -0.036 4.036 12 C -0.083 4.083 13 C -0.148 4.148 14 C -0.151 4.151 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.130 4.130 18 C -0.020 4.020 19 C -0.083 4.083 20 C -0.154 4.154 21 C 0.054 3.946 22 F -0.124 7.124 23 C -0.150 4.150 24 C -0.140 4.140 25 C 0.069 3.931 26 O -0.306 6.306 27 H 0.070 0.930 28 H 0.056 0.944 29 H -0.001 1.001 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 12.483 -11.100 2.546 16.897 hybrid contribution 0.100 1.371 -1.300 1.892 sum 12.583 -9.728 1.246 15.954 Atomic orbital electron populations 1.70027 1.07740 1.27370 1.53847 1.25648 0.95384 1.02222 0.95346 0.86024 0.79876 0.80165 0.78807 1.19596 1.21401 1.17364 1.21363 0.90764 0.93754 1.47452 0.92256 1.20123 0.94880 0.86457 0.94793 1.61810 1.17231 1.15846 1.29112 1.21112 0.89604 1.00747 0.92114 1.19862 0.99007 0.93813 0.95574 1.21184 1.00866 0.95038 0.97714 1.21363 1.00580 1.00659 0.92480 1.21424 0.99881 0.93508 0.99685 1.21423 0.99798 0.96327 0.96924 1.21122 0.99356 0.99785 0.92704 1.20760 1.01620 0.89098 0.90533 1.20076 0.94063 0.95700 0.98454 1.21002 0.98947 0.92514 1.02953 1.17671 0.84622 0.89736 1.02577 1.91476 1.51627 1.78496 1.90751 1.21205 0.91793 1.01976 0.99999 1.21474 0.99692 0.92284 1.00591 1.18621 0.88417 0.89858 0.96162 1.84990 1.29027 1.74060 1.42511 0.92968 0.94367 1.00140 0.89627 0.94454 0.87151 0.84716 0.83604 0.83873 0.86103 0.93549 0.90812 0.83762 0.81972 0.82765 0.74487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.01 0.60 5.47 84.66 0.46 1.07 16 3 Si 0.93 44.12 27.56 68.60 1.89 46.01 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.25 -11.13 6.41 99.48 0.64 -10.50 16 7 C -0.49 -27.81 9.05 25.60 0.23 -27.58 16 8 H 0.06 3.64 7.41 -2.91 -0.02 3.62 16 9 C 0.16 7.73 3.67 85.56 0.31 8.04 16 10 N -0.52 -20.73 4.34 -909.94 -3.95 -24.68 16 11 C 0.09 3.10 4.94 85.56 0.42 3.52 16 12 C -0.08 -2.84 4.94 -19.86 -0.10 -2.94 16 13 C -0.13 -4.41 7.86 22.27 0.18 -4.24 16 14 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 15 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 16 C -0.13 -3.51 10.05 22.27 0.22 -3.28 16 17 C -0.11 -3.54 9.70 22.27 0.22 -3.33 16 18 C 0.11 3.79 4.55 85.56 0.39 4.18 16 19 C -0.08 -2.47 4.82 -19.77 -0.10 -2.57 16 20 C -0.13 -3.46 8.97 22.30 0.20 -3.26 16 21 C 0.07 1.74 7.30 22.37 0.16 1.91 16 22 F -0.14 -3.46 17.27 44.97 0.78 -2.68 16 23 C -0.13 -2.76 10.02 22.30 0.22 -2.54 16 24 C -0.12 -2.90 9.99 22.36 0.22 -2.68 16 25 C 0.12 3.49 6.68 22.49 0.15 3.64 16 26 O -0.49 -17.54 12.29 -92.90 -1.14 -18.68 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.04 1.84 3.74 -2.39 -0.01 1.83 16 29 H -0.02 -0.88 7.67 -2.39 -0.02 -0.90 16 30 H 0.09 2.62 6.82 -2.39 -0.02 2.61 16 31 H 0.04 1.20 8.06 -2.39 -0.02 1.18 16 32 H 0.11 3.76 7.67 -2.91 -0.02 3.74 16 33 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.05 1.47 7.81 -2.39 -0.02 1.45 16 38 H 0.07 2.97 7.07 -2.39 -0.02 2.95 16 39 H 0.14 3.25 8.00 -2.91 -0.02 3.23 16 40 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.15 3.02 8.06 -2.92 -0.02 3.00 16 42 H 0.40 11.53 9.06 -74.06 -0.67 10.86 16 Total: -1.00 -68.95 354.12 1.83 -67.12 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.30 Total: 28.31 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.65 Total: -36.96 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.65 Total: -83.12 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -1.14 Total: -18.68 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.89 Total: 46.01 kcal Total: -68.95 1.83 -67.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140052924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.591 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds