Wall clock time and date at job start Tue Mar 31 2020 10:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00025 * 2 1 4 4 H 1.48493 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46826 * 299.99955 * 3 2 1 6 6 H 1.48499 * 109.47014 * 59.99711 * 3 2 1 7 7 C 1.37878 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47487 * 183.25943 * 9 7 2 11 11 C 1.46901 * 110.99824 * 60.01697 * 10 9 7 12 12 C 1.50697 * 109.47258 * 71.71652 * 11 10 9 13 13 C 1.38241 * 119.99710 * 264.09346 * 12 11 10 14 14 C 1.38236 * 120.00101 * 179.76572 * 13 12 11 15 15 C 1.38240 * 119.99596 * 0.50170 * 14 13 12 16 16 C 1.38231 * 120.00155 * 359.74882 * 15 14 13 17 17 C 1.38227 * 120.00333 * 84.35880 * 12 11 10 18 18 C 1.46904 * 111.00009 * 296.06735 * 10 9 7 19 19 C 1.50709 * 109.46565 * 293.94983 * 18 10 9 20 20 C 1.39011 * 120.84357 * 90.00463 * 19 18 10 21 21 O 1.35537 * 120.48125 * 0.04037 * 20 19 18 22 22 N 1.32970 * 119.04408 * 180.02562 * 20 19 18 23 23 C 1.31757 * 120.86341 * 359.97438 * 22 20 19 24 24 N 1.31760 * 121.87425 * 0.02562 * 23 22 20 25 25 C 1.32962 * 120.86077 * 0.02562 * 24 23 22 26 26 O 1.35548 * 120.47461 * 180.02562 * 25 24 23 27 27 H 0.96995 * 120.00244 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46949 * 63.25707 * 9 7 2 29 29 H 1.08999 * 109.47151 * 303.26387 * 9 7 2 30 30 H 1.09003 * 109.47355 * 191.71219 * 11 10 9 31 31 H 1.08999 * 109.47164 * 311.71218 * 11 10 9 32 32 H 1.07998 * 119.99881 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.00421 * 180.23172 * 14 13 12 34 34 H 1.07998 * 119.99494 * 179.72578 * 15 14 13 35 35 H 1.08002 * 119.99976 * 179.97438 * 16 15 14 36 36 H 1.08002 * 120.00583 * 0.02562 * 17 12 11 37 37 H 1.08997 * 109.47301 * 173.95520 * 18 10 9 38 38 H 1.09000 * 109.47316 * 53.95122 * 18 10 9 39 39 H 0.96701 * 113.99903 * 269.98438 * 21 20 19 40 40 H 1.08001 * 119.06481 * 179.72073 * 23 22 20 41 41 H 0.96692 * 113.99944 * 269.97770 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2037 -3.6146 0.0776 11 6 3.0077 -3.5353 1.3045 12 6 2.1461 -3.8770 2.4927 13 6 1.5543 -2.8685 3.2302 14 6 0.7600 -3.1821 4.3172 15 6 0.5659 -4.5037 4.6730 16 6 1.1618 -5.5119 3.9387 17 6 1.9519 -5.1985 2.8485 18 6 3.0631 -3.6573 -1.1131 19 6 2.2276 -3.9836 -2.3241 20 6 1.6399 -2.9740 -3.0776 21 8 1.8094 -1.6735 -2.7356 22 7 0.9094 -3.3025 -4.1390 23 6 0.7402 -4.5642 -4.4789 24 7 1.2808 -5.5488 -3.7901 25 6 2.0240 -5.3018 -2.7155 26 8 2.5768 -6.3207 -2.0130 27 1 -0.4850 0.8400 0.0004 28 1 0.6686 -2.5824 -0.9181 29 1 0.5816 -2.5323 0.8590 30 1 3.8366 -4.2404 1.2420 31 1 3.3987 -2.5241 1.4179 32 1 1.7099 -1.8358 2.9550 33 1 0.2947 -2.3944 4.8911 34 1 -0.0511 -4.7485 5.5249 35 1 1.0104 -6.5444 4.2169 36 1 2.4180 -5.9863 2.2752 37 1 3.8276 -4.4231 -0.9821 38 1 3.5405 -2.6873 -1.2516 39 1 1.1374 -1.3359 -2.1277 40 1 0.1373 -4.7983 -5.3438 41 1 2.0161 -6.6570 -1.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140468276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:34 Heat of formation + Delta-G solvation = 5.027267 kcal Electronic energy + Delta-G solvation = -26929.802443 eV Core-core repulsion = 23196.871857 eV Total energy + Delta-G solvation = -3732.930586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96752 -38.96662 -37.69628 -37.20090 -35.94893 -32.91375 -32.14387 -32.01629 -30.47216 -30.28150 -27.39822 -26.26470 -24.45543 -23.42832 -22.96144 -22.07877 -21.08096 -19.82559 -19.19367 -18.06066 -17.03150 -16.86201 -16.22381 -16.12728 -15.25232 -14.75673 -14.71211 -14.52324 -14.34571 -14.19975 -14.03282 -13.54178 -13.07211 -12.96817 -12.74937 -12.41083 -12.16804 -12.11785 -11.54874 -11.21283 -11.17606 -11.04328 -10.97683 -10.72447 -10.48727 -10.40972 -10.17909 -9.98576 -9.91436 -9.86380 -8.97172 -8.88628 -8.68640 -8.45883 -8.28551 -7.42572 -6.27771 -4.38541 1.14670 1.27737 1.79519 1.85442 3.15778 3.26266 3.28962 3.52250 3.93249 4.11722 4.21185 4.23061 4.65950 4.93523 5.00970 5.18737 5.27053 5.28450 5.37681 5.45655 5.58595 5.62549 5.74791 5.83730 5.96799 6.09367 6.16814 6.27867 6.42125 6.48602 6.55694 6.58693 6.82311 6.89417 6.96614 7.17514 7.21786 7.27559 7.46038 7.59617 7.64519 7.75235 7.95811 8.00429 8.20745 8.39359 8.72133 9.28006 10.74035 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.006816 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.220003 B = 4107.259296 C = 6416.173404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.181 3.819 10 N -0.532 5.532 11 C 0.094 3.906 12 C -0.059 4.059 13 C -0.093 4.093 14 C -0.126 4.126 15 C -0.131 4.131 16 C -0.133 4.133 17 C -0.106 4.106 18 C 0.107 3.893 19 C -0.197 4.197 20 C 0.395 3.605 21 O -0.470 6.470 22 N -0.554 5.554 23 C 0.327 3.673 24 N -0.559 5.559 25 C 0.375 3.625 26 O -0.474 6.474 27 H 0.267 0.733 28 H 0.012 0.988 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.430 0.570 40 H 0.198 0.802 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -9.043 2.703 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.055 3.945 10 N -0.256 5.256 11 C -0.033 4.033 12 C -0.059 4.059 13 C -0.111 4.111 14 C -0.144 4.144 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.125 4.125 18 C -0.022 4.022 19 C -0.204 4.204 20 C 0.208 3.792 21 O -0.287 6.287 22 N -0.281 5.281 23 C 0.039 3.961 24 N -0.286 5.286 25 C 0.189 3.811 26 O -0.282 6.282 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.300 0.700 40 H 0.215 0.785 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.151 -9.455 1.361 9.792 hybrid contribution 0.371 1.980 1.257 2.374 sum 2.521 -7.476 2.618 8.312 Atomic orbital electron populations 1.69948 1.05844 1.27440 1.49272 1.24971 0.94799 0.99273 0.94747 0.86583 0.80350 0.83733 0.77816 1.19646 1.20684 1.20995 1.21729 0.93789 0.91412 1.51550 0.91771 1.19888 0.91263 0.85814 0.97524 1.62600 1.16869 1.46727 0.99355 1.20936 0.93506 1.00958 0.87909 1.19809 0.97729 0.92829 0.95556 1.21298 0.95654 1.00170 0.94016 1.21109 0.99289 0.96147 0.97866 1.21014 1.00619 0.93223 1.00083 1.21002 0.98937 0.98574 0.96573 1.20954 0.98931 0.95973 0.96643 1.20649 0.93204 1.01477 0.86882 1.21821 1.05279 0.92770 1.00553 1.19376 0.86874 0.86316 0.86592 1.84620 1.55569 1.19633 1.68848 1.68067 1.19441 1.22585 1.18051 1.24412 0.93175 0.81811 0.96733 1.67913 1.12442 1.39361 1.08885 1.19061 0.88040 0.85798 0.88197 1.84604 1.44109 1.50454 1.49006 0.92334 0.96969 0.93743 0.91905 0.92029 0.85247 0.86751 0.87048 0.86950 0.86612 0.90769 0.91526 0.69970 0.78513 0.73326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.66 13.29 55.43 0.74 -21.92 16 2 C 0.07 1.59 4.66 -17.82 -0.08 1.51 16 3 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.55 -12.54 5.17 -34.44 -0.18 -12.71 16 8 H 0.06 1.51 5.95 -52.48 -0.31 1.20 16 9 C 0.18 3.95 4.29 -4.98 -0.02 3.93 16 10 N -0.53 -9.73 4.65 -238.96 -1.11 -10.84 16 11 C 0.09 1.60 4.94 -4.98 -0.02 1.57 16 12 C -0.06 -0.97 4.89 -104.63 -0.51 -1.49 16 13 C -0.09 -1.61 8.53 -39.58 -0.34 -1.95 16 14 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 15 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 16 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 17 C -0.11 -1.56 9.72 -39.58 -0.38 -1.94 16 18 C 0.11 1.89 4.60 -4.97 -0.02 1.87 16 19 C -0.20 -3.59 4.93 -104.05 -0.51 -4.10 16 20 C 0.39 7.88 6.68 -16.77 -0.11 7.77 16 21 O -0.47 -10.23 11.37 -18.31 -0.21 -10.43 16 22 N -0.55 -10.36 10.46 -14.70 -0.15 -10.51 16 23 C 0.33 5.16 12.28 -92.22 -1.13 4.03 16 24 N -0.56 -9.26 10.46 -14.71 -0.15 -9.41 16 25 C 0.37 6.29 7.80 -16.78 -0.13 6.16 16 26 O -0.47 -6.75 12.74 -18.34 -0.23 -6.98 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.01 0.29 4.87 -51.93 -0.25 0.04 16 29 H 0.04 1.09 6.64 -51.93 -0.35 0.75 16 30 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 31 H 0.06 1.15 6.14 -51.93 -0.32 0.83 16 32 H 0.13 2.47 8.06 -52.49 -0.42 2.04 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.07 1.18 7.35 -51.93 -0.38 0.80 16 38 H 0.07 1.32 5.98 -51.93 -0.31 1.01 16 39 H 0.43 9.93 5.07 45.56 0.23 10.16 16 40 H 0.20 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.41 4.25 9.06 45.56 0.41 4.66 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -27.02 337.97 -9.05 -36.07 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -3.35 Total: 16.50 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -4.64 Total: -2.13 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.68 Total: -52.69 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.44 Total: -17.42 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.02 -9.05 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140468276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.102 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds