Wall clock time and date at job start Tue Mar 31 2020 10:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47555 * 299.99953 * 3 2 1 6 6 H 1.48508 * 109.47373 * 60.00022 * 3 2 1 7 7 C 1.37871 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52634 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.28182 * 177.61761 * 10 9 7 12 12 N 1.46849 * 109.52442 * 300.82868 * 11 10 9 13 13 C 1.46901 * 110.99649 * 185.83742 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99608 * 13 12 11 15 15 C 1.38590 * 120.80025 * 269.72226 * 14 13 12 16 16 N 1.32339 * 119.10382 * 179.72248 * 15 14 13 17 17 C 1.31795 * 120.81857 * 0.55985 * 16 15 14 18 18 C 1.50692 * 119.12629 * 179.68744 * 17 16 15 19 19 F 1.39902 * 109.47254 * 285.02396 * 18 17 16 20 20 F 1.39899 * 109.47347 * 45.02374 * 18 17 16 21 21 F 1.39901 * 109.47467 * 165.02346 * 18 17 16 22 22 N 1.31799 * 121.75137 * 359.71344 * 17 16 15 23 23 C 1.32333 * 120.81867 * 359.97438 * 22 17 16 24 24 C 1.46839 * 111.20047 * 61.73811 * 12 11 10 25 25 C 1.53034 * 109.52552 * 298.25821 * 24 12 11 26 26 H 0.97006 * 120.00096 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.52441 * 59.86753 * 9 7 2 28 28 H 1.09005 * 109.50142 * 57.68544 * 10 9 7 29 29 H 1.08998 * 109.50777 * 297.56442 * 10 9 7 30 30 H 1.08991 * 109.46218 * 180.80508 * 11 10 9 31 31 H 1.09005 * 109.44695 * 60.83538 * 11 10 9 32 32 H 1.09002 * 109.47401 * 49.99636 * 13 12 11 33 33 H 1.09001 * 109.46874 * 289.99649 * 13 12 11 34 34 H 1.08001 * 120.45435 * 359.97438 * 15 14 13 35 35 H 1.08006 * 120.44657 * 179.97438 * 23 22 17 36 36 H 1.09006 * 109.46266 * 58.27078 * 24 12 11 37 37 H 1.09002 * 109.46276 * 178.24270 * 24 12 11 38 38 H 1.09006 * 109.50444 * 299.24199 * 25 24 12 39 39 H 1.09003 * 109.50687 * 179.12283 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9852 0.0606 12 7 0.6531 -5.0194 1.2770 13 6 0.0068 -6.3286 1.4389 14 6 -0.6223 -6.4127 2.8057 15 6 0.0925 -6.9035 3.8869 16 7 -0.4911 -6.9572 5.0734 17 6 -1.7384 -6.5618 5.2309 18 6 -2.3677 -6.6463 6.5976 19 9 -2.6781 -7.9795 6.8865 20 9 -1.4715 -6.1583 7.5546 21 9 -3.5376 -5.8796 6.6206 22 7 -2.4503 -6.0949 4.2248 23 6 -1.9313 -6.0061 3.0107 24 6 -0.3405 -3.9383 1.2771 25 6 0.3751 -2.5858 1.2535 26 1 -0.4850 0.8401 0.0004 27 1 0.6226 -2.5569 -0.8882 28 1 2.8990 -3.5841 0.8689 29 1 2.8429 -3.6322 -0.9103 30 1 2.1803 -5.8160 0.0752 31 1 0.8315 -5.0703 -0.8151 32 1 0.7517 -7.1173 1.3326 33 1 -0.7627 -6.4506 0.6766 34 1 1.1134 -7.2337 3.7638 35 1 -2.5202 -5.6229 2.1904 36 1 -0.9756 -4.0286 0.3958 37 1 -0.9540 -4.0090 2.1754 38 1 0.9998 -2.4891 2.1415 39 1 -0.3629 -1.7838 1.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141462604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:09 Heat of formation + Delta-G solvation = -100.439166 kcal Electronic energy + Delta-G solvation = -26198.772152 eV Core-core repulsion = 21919.411458 eV Total energy + Delta-G solvation = -4279.360694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.35103 -47.88443 -47.82556 -41.55984 -38.47812 -34.90433 -34.22518 -32.98672 -31.10790 -29.97982 -28.38627 -26.07915 -25.17639 -24.37402 -22.63641 -22.17702 -21.24536 -19.26985 -19.01306 -18.78767 -18.67550 -17.55788 -16.51570 -15.91364 -15.77085 -15.18495 -14.97916 -14.63686 -14.57981 -14.42261 -14.35395 -14.25217 -13.97320 -13.95697 -13.85809 -13.38915 -13.07745 -12.85113 -12.54168 -12.39984 -11.96722 -11.66090 -11.29808 -11.20655 -11.01691 -10.84370 -10.51252 -10.35366 -10.09428 -9.90854 -9.71026 -9.54100 -9.06917 -8.80428 -8.36268 -8.04522 -6.03390 -4.08697 0.20467 0.68817 2.00816 3.08937 3.17247 3.27155 3.34349 3.35819 3.39310 4.10584 4.18123 4.26629 4.29562 4.37548 4.41085 4.45565 4.58741 5.24402 5.27668 5.36329 5.48958 5.60128 5.69652 5.85283 5.90686 5.99238 6.14170 6.40241 6.44974 6.49177 6.72243 6.94007 6.98851 7.26820 7.41278 7.42248 7.46434 7.72484 7.94945 8.06227 8.41025 8.95104 9.56484 11.02939 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003096 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.447492 B = 9042.537993 C = 9887.744278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.107 4.107 11 C 0.062 3.938 12 N -0.532 5.532 13 C 0.093 3.907 14 C -0.137 4.137 15 C 0.169 3.831 16 N -0.479 5.479 17 C 0.224 3.776 18 C 0.549 3.451 19 F -0.166 7.166 20 F -0.160 7.160 21 F -0.156 7.156 22 N -0.476 5.476 23 C 0.158 3.842 24 C 0.052 3.948 25 C -0.104 4.104 26 H 0.259 0.741 27 H 0.021 0.979 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.028 0.972 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 -16.401 6.735 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.145 4.145 11 C -0.065 4.065 12 N -0.257 5.257 13 C -0.037 4.037 14 C -0.141 4.141 15 C 0.003 3.997 16 N -0.192 5.192 17 C -0.047 4.047 18 C 0.492 3.508 19 F -0.148 7.148 20 F -0.141 7.141 21 F -0.137 7.137 22 N -0.189 5.189 23 C -0.008 4.008 24 C -0.075 4.075 25 C -0.142 4.142 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.201 0.799 35 H 0.197 0.803 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.058 -16.247 8.063 18.586 hybrid contribution 0.160 0.936 -1.308 1.616 sum -3.897 -15.311 6.755 17.183 Atomic orbital electron populations 1.69872 1.05883 1.26312 1.51041 1.24966 0.94848 0.99084 0.95101 0.86576 0.80190 0.83918 0.77554 1.19805 1.21102 1.21049 1.21225 0.92942 0.90598 1.50178 0.92661 1.18688 0.92671 0.91877 0.93824 1.21694 0.98746 0.93492 1.00547 1.22153 0.95584 0.99746 0.89044 1.62090 1.23460 1.00833 1.39285 1.20980 0.98016 0.94478 0.90176 1.21901 0.95759 0.97224 0.99240 1.23223 0.99872 0.91057 0.85514 1.67972 1.09526 1.15020 1.26654 1.22451 0.89492 0.98555 0.94211 1.17098 0.76273 0.74438 0.82964 1.93242 1.93069 1.34437 1.94036 1.93260 1.67777 1.87670 1.65427 1.93263 1.48576 1.75308 1.96567 1.67994 1.38170 1.12657 1.00081 1.23314 0.92667 0.91286 0.93509 1.22405 0.93231 0.93297 0.98576 1.21670 1.00283 0.92689 0.99561 0.93092 0.96067 0.92380 0.92880 0.92033 0.95341 0.89131 0.93130 0.79936 0.80266 0.95353 0.92978 0.93861 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 11.37 55.43 0.63 -24.14 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.57 8.56 -34.44 -0.29 -13.87 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.12 2.16 -91.65 -0.20 0.92 16 10 C -0.11 -2.05 5.32 -26.65 -0.14 -2.19 16 11 C 0.06 0.94 5.46 -3.83 -0.02 0.92 16 12 N -0.53 -7.88 4.65 -236.11 -1.10 -8.97 16 13 C 0.09 0.98 5.16 -4.97 -0.03 0.96 16 14 C -0.14 -1.51 4.90 -104.36 -0.51 -2.02 16 15 C 0.17 1.86 11.01 -17.20 -0.19 1.67 16 16 N -0.48 -6.26 10.21 -10.73 -0.11 -6.37 16 17 C 0.22 3.05 7.09 -157.19 -1.11 1.93 16 18 C 0.55 6.99 3.49 36.00 0.13 7.12 16 19 F -0.17 -2.01 17.30 2.25 0.04 -1.97 16 20 F -0.16 -2.08 17.20 2.25 0.04 -2.04 16 21 F -0.16 -2.02 16.87 2.25 0.04 -1.98 16 22 N -0.48 -6.44 9.84 -10.73 -0.11 -6.54 16 23 C 0.16 1.85 9.22 -17.20 -0.16 1.69 16 24 C 0.05 0.90 5.19 -3.84 -0.02 0.88 16 25 C -0.10 -2.31 5.12 -26.65 -0.14 -2.45 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.77 7.95 -51.93 -0.41 0.35 16 33 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.18 1.74 7.99 -52.48 -0.42 1.32 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.85 5.78 -51.93 -0.30 0.55 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 2.37 6.18 -51.93 -0.32 2.05 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -28.87 333.25 -8.13 -37.00 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.79 Total: -3.06 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.78 Total: -2.87 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.68 Total: -46.02 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.12 Total: -5.99 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.87 -8.13 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141462604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.434 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds