Wall clock time and date at job start Tue Mar 31 2020 10:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47555 * 299.99953 * 3 2 1 6 6 H 1.48508 * 109.47373 * 60.00022 * 3 2 1 7 7 C 1.37871 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52634 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.28182 * 177.61761 * 10 9 7 12 12 N 1.46849 * 109.52442 * 300.82868 * 11 10 9 13 13 C 1.46901 * 110.99649 * 185.83742 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99608 * 13 12 11 15 15 C 1.38590 * 120.80025 * 269.72226 * 14 13 12 16 16 N 1.32339 * 119.10382 * 179.72248 * 15 14 13 17 17 C 1.31795 * 120.81857 * 0.55985 * 16 15 14 18 18 C 1.50692 * 119.12629 * 179.68744 * 17 16 15 19 19 F 1.39902 * 109.47254 * 285.02396 * 18 17 16 20 20 F 1.39899 * 109.47347 * 45.02374 * 18 17 16 21 21 F 1.39901 * 109.47467 * 165.02346 * 18 17 16 22 22 N 1.31799 * 121.75137 * 359.71344 * 17 16 15 23 23 C 1.32333 * 120.81867 * 359.97438 * 22 17 16 24 24 C 1.46839 * 111.20047 * 61.73811 * 12 11 10 25 25 C 1.53034 * 109.52552 * 298.25821 * 24 12 11 26 26 H 0.97006 * 120.00096 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.52441 * 59.86753 * 9 7 2 28 28 H 1.09005 * 109.50142 * 57.68544 * 10 9 7 29 29 H 1.08998 * 109.50777 * 297.56442 * 10 9 7 30 30 H 1.08991 * 109.46218 * 180.80508 * 11 10 9 31 31 H 1.09005 * 109.44695 * 60.83538 * 11 10 9 32 32 H 1.09002 * 109.47401 * 49.99636 * 13 12 11 33 33 H 1.09001 * 109.46874 * 289.99649 * 13 12 11 34 34 H 1.08001 * 120.45435 * 359.97438 * 15 14 13 35 35 H 1.08006 * 120.44657 * 179.97438 * 23 22 17 36 36 H 1.09006 * 109.46266 * 58.27078 * 24 12 11 37 37 H 1.09002 * 109.46276 * 178.24270 * 24 12 11 38 38 H 1.09006 * 109.50444 * 299.24199 * 25 24 12 39 39 H 1.09003 * 109.50687 * 179.12283 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9852 0.0606 12 7 0.6531 -5.0194 1.2770 13 6 0.0068 -6.3286 1.4389 14 6 -0.6223 -6.4127 2.8057 15 6 0.0925 -6.9035 3.8869 16 7 -0.4911 -6.9572 5.0734 17 6 -1.7384 -6.5618 5.2309 18 6 -2.3677 -6.6463 6.5976 19 9 -2.6781 -7.9795 6.8865 20 9 -1.4715 -6.1583 7.5546 21 9 -3.5376 -5.8796 6.6206 22 7 -2.4503 -6.0949 4.2248 23 6 -1.9313 -6.0061 3.0107 24 6 -0.3405 -3.9383 1.2771 25 6 0.3751 -2.5858 1.2535 26 1 -0.4850 0.8401 0.0004 27 1 0.6226 -2.5569 -0.8882 28 1 2.8990 -3.5841 0.8689 29 1 2.8429 -3.6322 -0.9103 30 1 2.1803 -5.8160 0.0752 31 1 0.8315 -5.0703 -0.8151 32 1 0.7517 -7.1173 1.3326 33 1 -0.7627 -6.4506 0.6766 34 1 1.1134 -7.2337 3.7638 35 1 -2.5202 -5.6229 2.1904 36 1 -0.9756 -4.0286 0.3958 37 1 -0.9540 -4.0090 2.1754 38 1 0.9998 -2.4891 2.1415 39 1 -0.3629 -1.7838 1.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141462604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:09 Heat of formation + Delta-G solvation = -117.851814 kcal Electronic energy + Delta-G solvation = -26199.527221 eV Core-core repulsion = 21919.411458 eV Total energy + Delta-G solvation = -4280.115763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.34180 -48.86488 -48.83100 -42.47026 -39.80247 -36.30793 -35.14325 -34.47467 -32.64598 -31.45774 -29.53230 -27.59157 -26.09602 -25.66319 -23.87376 -23.61752 -22.52350 -20.39113 -20.17908 -19.88878 -19.77474 -18.51368 -18.44776 -17.06326 -16.81518 -16.44526 -16.22077 -15.93631 -15.64075 -15.50205 -15.47458 -15.24671 -14.97158 -14.95593 -14.84624 -14.72709 -14.61750 -14.21851 -14.04004 -13.70183 -13.16966 -13.06358 -12.89276 -12.58041 -12.44247 -12.18824 -12.09213 -11.95972 -11.83719 -11.34328 -10.91925 -10.72233 -10.62931 -10.61640 -10.37532 -9.21149 -8.08786 -6.21017 -0.72105 -0.17582 1.05381 1.38367 1.41512 1.51558 2.16062 2.20496 2.43164 2.43323 3.07423 3.18251 3.19340 3.36333 3.37163 3.53238 3.60885 3.69376 4.20538 4.30621 4.39825 4.51059 4.55733 4.70347 4.79825 4.81816 4.90761 5.02089 5.03915 5.12693 5.25683 5.35354 5.54711 5.57987 5.63396 6.01221 6.02203 6.24417 6.30023 6.42111 6.50597 6.91781 7.47085 8.95469 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003096 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.447492 B = 9042.537993 C = 9887.744278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.102 4.102 11 C 0.069 3.931 12 N -0.539 5.539 13 C 0.097 3.903 14 C -0.133 4.133 15 C 0.170 3.830 16 N -0.494 5.494 17 C 0.210 3.790 18 C 0.550 3.450 19 F -0.163 7.163 20 F -0.163 7.163 21 F -0.160 7.160 22 N -0.496 5.496 23 C 0.149 3.851 24 C 0.067 3.933 25 C -0.096 4.096 26 H 0.259 0.741 27 H -0.008 1.008 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.031 0.969 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.215 0.785 35 H 0.196 0.804 36 H 0.029 0.971 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -18.185 6.329 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.140 4.140 11 C -0.058 4.058 12 N -0.264 5.264 13 C -0.031 4.031 14 C -0.137 4.137 15 C 0.005 3.995 16 N -0.208 5.208 17 C -0.061 4.061 18 C 0.494 3.506 19 F -0.145 7.145 20 F -0.145 7.145 21 F -0.141 7.141 22 N -0.209 5.209 23 C -0.016 4.016 24 C -0.061 4.061 25 C -0.135 4.135 26 H 0.068 0.932 27 H 0.010 0.990 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.213 0.787 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.109 -18.047 7.653 19.848 hybrid contribution -0.114 1.488 -1.196 1.913 sum -3.223 -16.559 6.457 18.063 Atomic orbital electron populations 1.70007 1.07023 1.26844 1.51799 1.25692 0.95639 1.02183 0.95060 0.85664 0.79250 0.80246 0.77457 1.19182 1.20676 1.20992 1.21655 0.92999 0.92463 1.49836 0.93227 1.18669 0.93240 0.92663 0.92919 1.21556 0.97950 0.94212 1.00252 1.22072 0.96008 0.98388 0.89300 1.61949 1.23163 1.02106 1.39225 1.21103 0.99326 0.92658 0.90011 1.21984 0.95371 0.96780 0.99599 1.23801 1.00927 0.90031 0.84738 1.68019 1.09350 1.15586 1.27806 1.22523 0.89990 0.99201 0.94363 1.17088 0.76093 0.74469 0.82972 1.93242 1.93038 1.34171 1.94029 1.93247 1.67887 1.87748 1.65585 1.93251 1.48795 1.75453 1.96591 1.67997 1.38802 1.13375 1.00773 1.23695 0.93484 0.91036 0.93356 1.22069 0.93205 0.91736 0.99063 1.21403 0.99102 0.94937 0.98007 0.93225 0.98966 0.93242 0.92678 0.88042 0.95038 0.85616 0.91440 0.76860 0.78695 0.95325 0.92055 0.95852 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.33 11.37 21.45 0.24 -52.09 16 2 C 0.01 0.69 5.31 84.65 0.45 1.14 16 3 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -28.78 8.56 25.60 0.22 -28.56 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 9 C 0.04 2.07 2.16 -11.46 -0.02 2.05 16 10 C -0.10 -3.77 5.32 30.65 0.16 -3.61 16 11 C 0.07 1.87 5.46 86.33 0.47 2.34 16 12 N -0.54 -14.24 4.65 -900.93 -4.19 -18.43 16 13 C 0.10 1.62 5.16 85.56 0.44 2.06 16 14 C -0.13 -2.50 4.90 -19.69 -0.10 -2.60 16 15 C 0.17 3.21 11.01 84.70 0.93 4.14 16 16 N -0.49 -12.02 10.21 -187.85 -1.92 -13.94 16 17 C 0.21 5.50 7.09 138.75 0.98 6.49 16 18 C 0.55 13.79 3.49 71.23 0.25 14.04 16 19 F -0.16 -3.85 17.30 44.97 0.78 -3.08 16 20 F -0.16 -4.18 17.20 44.97 0.77 -3.41 16 21 F -0.16 -4.11 16.87 44.97 0.76 -3.35 16 22 N -0.50 -12.87 9.84 -187.84 -1.85 -14.72 16 23 C 0.15 3.19 9.22 84.70 0.78 3.97 16 24 C 0.07 2.24 5.19 86.33 0.45 2.69 16 25 C -0.10 -4.36 5.12 30.65 0.16 -4.20 16 26 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 27 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.10 2.01 8.01 -2.39 -0.02 1.99 16 31 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.13 1.33 7.95 -2.39 -0.02 1.31 16 33 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.21 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.20 3.35 7.99 -2.91 -0.02 3.33 16 36 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.06 1.93 5.78 -2.39 -0.01 1.92 16 38 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.06 2.97 6.18 -2.39 -0.01 2.95 16 Total: -1.00 -64.57 333.25 2.88 -61.69 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.08 Total: 1.87 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.17 Total: -0.06 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -7.71 Total: -99.17 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 2.31 Total: -9.84 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.57 2.88 -61.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141462604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.160 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds