Wall clock time and date at job start Tue Mar 31 2020 10:47:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99826 * 2 1
4 4 H 1.48504 * 109.46963 * 269.99690 * 3 2 1
5 5 H 1.48499 * 109.47242 * 29.99484 * 3 2 1
6 6 H 1.48500 * 109.47019 * 149.99589 * 3 2 1
7 7 C 1.37875 * 120.00016 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00026 * 0.02562 * 7 2 1
9 9 C 1.50697 * 119.99963 * 180.02562 * 7 2 1
10 10 H 1.08996 * 109.53593 * 60.09975 * 9 7 2
11 11 C 1.53123 * 109.50478 * 300.00322 * 9 7 2
12 12 C 1.53120 * 109.21163 * 182.37233 * 11 9 7
13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9
14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11
15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12
16 16 C 1.50693 * 109.47321 * 45.79054 * 15 14 13
17 17 C 1.38603 * 120.80310 * 269.72409 * 16 15 14
18 18 N 1.32325 * 119.10429 * 179.71570 * 17 16 15
19 19 C 1.31800 * 120.82284 * 0.56922 * 18 17 16
20 20 C 1.50698 * 119.12680 * 179.68280 * 19 18 17
21 21 F 1.39898 * 109.47190 * 285.02160 * 20 19 18
22 22 F 1.39900 * 109.46831 * 45.01930 * 20 19 18
23 23 F 1.39903 * 109.47069 * 165.02114 * 20 19 18
24 24 N 1.31796 * 121.74595 * 359.70345 * 19 18 17
25 25 C 1.32331 * 120.82511 * 0.02562 * 24 19 18
26 26 C 1.46848 * 111.19518 * 61.74755 * 14 13 12
27 27 H 0.96998 * 120.00135 * 0.02562 * 1 2 3
28 28 H 1.09002 * 109.52319 * 302.31026 * 11 9 7
29 29 H 1.08995 * 109.52318 * 62.43708 * 11 9 7
30 30 H 1.09004 * 109.49930 * 177.63007 * 12 11 9
31 31 H 1.08997 * 109.50353 * 297.74224 * 12 11 9
32 32 H 1.09003 * 109.44926 * 180.83262 * 13 12 11
33 33 H 1.09002 * 109.45193 * 60.88225 * 13 12 11
34 34 H 1.09002 * 109.47245 * 165.79508 * 15 14 13
35 35 H 1.09007 * 109.47066 * 285.78934 * 15 14 13
36 36 H 1.07998 * 120.44183 * 359.97438 * 17 16 15
37 37 H 1.07995 * 120.44682 * 179.97438 * 25 24 19
38 38 H 1.09006 * 109.46097 * 178.23945 * 26 14 13
39 39 H 1.08996 * 109.46046 * 58.26729 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0005
9 6 3.5115 -1.1940 0.0011
10 1 3.8756 -0.6818 0.8916
11 6 4.0232 -0.4725 -1.2488
12 6 5.5533 -0.5281 -1.2717
13 6 6.0050 -1.9912 -1.2386
14 7 5.4908 -2.6370 -0.0241
15 6 6.0188 -4.0012 0.1106
16 6 7.5014 -3.9950 -0.1590
17 6 7.9905 -4.1928 -1.4407
18 7 9.2985 -4.1751 -1.6403
19 6 10.1322 -3.9838 -0.6375
20 6 11.6148 -3.9780 -0.9070
21 9 12.0557 -5.2889 -1.1176
22 9 11.8788 -3.2088 -2.0454
23 9 12.2864 -3.4310 0.1916
24 7 9.7034 -3.7979 0.5948
25 6 8.4090 -3.7975 0.8697
26 6 4.0225 -2.6365 -0.0035
27 1 -0.4850 0.8400 -0.0004
28 1 3.6276 -0.9613 -2.1391
29 1 3.6968 0.5672 -1.2285
30 1 5.9210 -0.0525 -2.1809
31 1 5.9494 -0.0053 -0.4012
32 1 7.0941 -2.0350 -1.2398
33 1 5.6199 -2.5100 -2.1165
34 1 5.8349 -4.3638 1.1220
35 1 5.5219 -4.6555 -0.6058
36 1 7.3131 -4.3550 -2.2660
37 1 8.0644 -3.6449 1.8817
38 1 3.6717 -3.1489 0.8924
39 1 3.6468 -3.1521 -0.8872
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001141462654.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:24
Heat of formation + Delta-G solvation = -90.651633 kcal
Electronic energy + Delta-G solvation = -26305.678883 eV
Core-core repulsion = 22026.742608 eV
Total energy + Delta-G solvation = -4278.936275 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.125 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-50.46456 -47.99399 -47.94495 -41.75164 -38.74531 -35.09833 -34.36623 -32.86186
-31.83950 -30.42222 -28.47706 -25.70364 -25.33542 -24.92128 -23.25525 -22.17029
-21.04319 -19.39992 -19.21580 -18.90148 -18.89897 -17.69413 -16.86554 -16.16024
-15.96630 -15.43347 -15.08125 -14.74937 -14.69870 -14.46131 -14.36455 -14.08786
-14.08268 -14.05791 -13.97166 -13.89531 -13.55382 -13.07315 -12.83988 -12.44459
-12.34926 -11.99810 -11.48600 -11.38503 -11.19515 -11.15454 -10.69962 -10.20732
-10.14547 -9.96877 -9.83557 -9.76892 -9.23928 -9.04493 -8.59200 -8.11629
-6.14285 -4.14393 0.05490 0.54447 1.88328 2.95797 3.05151 3.21145
3.22942 3.35067 3.37009 3.99368 4.04695 4.14767 4.16589 4.24397
4.34327 4.35651 4.40285 5.13978 5.15308 5.21005 5.33097 5.41739
5.54759 5.61882 5.73331 5.79613 5.97566 6.11232 6.13292 6.28606
6.29927 6.45918 6.64503 6.70071 7.05549 7.17453 7.27525 7.29073
7.51493 7.73516 8.42769 8.88127 9.48115 10.98779
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.030476 B = 0.002903 C = 0.002807
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 918.532582 B = 9643.022078 C = 9972.601165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.072 3.928
3 Si 0.887 3.113
4 H -0.280 1.280
5 H -0.298 1.298
6 H -0.264 1.264
7 C -0.517 4.517
8 H 0.073 0.927
9 C 0.021 3.979
10 H 0.036 0.964
11 C -0.123 4.123
12 C -0.119 4.119
13 C 0.057 3.943
14 N -0.535 5.535
15 C 0.094 3.906
16 C -0.143 4.143
17 C 0.156 3.844
18 N -0.477 5.477
19 C 0.224 3.776
20 C 0.549 3.451
21 F -0.165 7.165
22 F -0.160 7.160
23 F -0.156 7.156
24 N -0.476 5.476
25 C 0.168 3.832
26 C 0.077 3.923
27 H 0.264 0.736
28 H 0.057 0.943
29 H 0.048 0.952
30 H 0.055 0.945
31 H 0.063 0.937
32 H 0.057 0.943
33 H 0.033 0.967
34 H 0.096 0.904
35 H 0.054 0.946
36 H 0.180 0.820
37 H 0.187 0.813
38 H 0.072 0.928
39 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.733 -9.336 -1.513 21.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.130 4.130
3 Si 0.718 3.282
4 H -0.207 1.207
5 H -0.225 1.225
6 H -0.188 1.188
7 C -0.555 4.555
8 H 0.091 0.909
9 C 0.002 3.998
10 H 0.055 0.945
11 C -0.161 4.161
12 C -0.157 4.157
13 C -0.071 4.071
14 N -0.260 5.260
15 C -0.035 4.035
16 C -0.147 4.147
17 C -0.010 4.010
18 N -0.190 5.190
19 C -0.047 4.047
20 C 0.492 3.508
21 F -0.147 7.147
22 F -0.142 7.142
23 F -0.137 7.137
24 N -0.189 5.189
25 C 0.003 3.997
26 C -0.049 4.049
27 H 0.074 0.926
28 H 0.076 0.924
29 H 0.066 0.934
30 H 0.074 0.926
31 H 0.082 0.918
32 H 0.075 0.925
33 H 0.051 0.949
34 H 0.114 0.886
35 H 0.072 0.928
36 H 0.197 0.803
37 H 0.204 0.796
38 H 0.090 0.910
39 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 20.742 -8.952 -1.289 22.628
hybrid contribution -0.672 0.547 -0.712 1.122
sum 20.069 -8.405 -2.002 21.850
Atomic orbital electron populations
1.69890 1.06317 1.27055 1.50563 1.24979 0.94661 0.99058 0.94310
0.86841 0.79996 0.83508 0.77890 1.20705 1.22538 1.18846 1.20956
0.88610 0.94532 1.51410 0.90877 1.19158 0.96065 0.90792 0.93783
0.94544 1.22047 0.92348 1.00496 1.01193 1.21668 0.98299 0.94710
1.01026 1.22152 0.98095 0.96139 0.90687 1.62275 1.11158 1.14404
1.38127 1.21076 0.87000 0.92201 1.03199 1.21987 0.99641 0.97663
0.95412 1.23322 0.90421 0.90665 0.96586 1.67964 1.04605 1.11981
1.34494 1.22479 0.94921 1.00159 0.87182 1.17095 0.84450 0.74515
0.74720 1.93249 1.90405 1.36298 1.94714 1.93260 1.94514 1.75300
1.51097 1.93263 1.81431 1.85519 1.53498 1.68026 1.18557 1.11646
1.20663 1.23315 0.86059 0.89485 1.00849 1.22161 0.82337 1.00184
1.00243 0.92588 0.92426 0.93392 0.92634 0.91787 0.92507 0.94878
0.88574 0.92798 0.80287 0.79634 0.90958 0.95019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16
2 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16
3 Si 0.89 21.36 24.35 -169.99 -4.14 17.22 16
4 H -0.28 -6.59 6.89 56.52 0.39 -6.20 16
5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16
6 H -0.26 -6.10 6.53 56.52 0.37 -5.73 16
7 C -0.52 -13.66 9.15 -34.44 -0.31 -13.97 16
8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16
9 C 0.02 0.46 1.85 -91.69 -0.17 0.29 16
10 H 0.04 0.84 7.21 -51.93 -0.37 0.47 16
11 C -0.12 -2.48 4.73 -26.61 -0.13 -2.61 16
12 C -0.12 -1.95 6.11 -26.58 -0.16 -2.12 16
13 C 0.06 0.80 4.61 -3.77 -0.02 0.78 16
14 N -0.53 -7.58 4.80 -236.03 -1.13 -8.71 16
15 C 0.09 0.96 5.47 -4.98 -0.03 0.93 16
16 C -0.14 -1.40 4.13 -104.36 -0.43 -1.83 16
17 C 0.16 1.56 9.17 -17.20 -0.16 1.40 16
18 N -0.48 -5.64 10.21 -10.73 -0.11 -5.75 16
19 C 0.22 2.72 7.09 -157.19 -1.11 1.60 16
20 C 0.55 6.29 3.49 36.00 0.13 6.41 16
21 F -0.17 -1.85 17.30 2.25 0.04 -1.81 16
22 F -0.16 -1.87 17.20 2.25 0.04 -1.83 16
23 F -0.16 -1.80 16.87 2.25 0.04 -1.76 16
24 N -0.48 -5.63 9.84 -10.73 -0.11 -5.73 16
25 C 0.17 1.68 11.01 -17.20 -0.19 1.49 16
26 C 0.08 1.34 4.65 -3.83 -0.02 1.32 16
27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
29 H 0.05 1.05 3.34 -51.93 -0.17 0.87 16
30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
32 H 0.06 0.74 5.65 -51.93 -0.29 0.44 16
33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16
35 H 0.05 0.51 8.04 -51.93 -0.42 0.09 16
36 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16
37 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16
38 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16
39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
LS Contribution 325.55 15.07 4.91 4.91
Total: -1.00 -29.85 325.55 -7.05 -36.91
By element:
Atomic # 1 Polarization: 1.59 SS G_CDS: -4.66 Total: -3.07 kcal
Atomic # 6 Polarization: -1.70 SS G_CDS: -2.70 Total: -4.40 kcal
Atomic # 7 Polarization: -45.59 SS G_CDS: -0.57 Total: -46.17 kcal
Atomic # 9 Polarization: -5.51 SS G_CDS: 0.12 Total: -5.39 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -29.85 -7.05 -36.91 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141462654.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.746 kcal
(2) G-P(sol) polarization free energy of solvation -29.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds