Wall clock time and date at job start Tue Mar 31 2020 10:47:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99826 * 2 1
4 4 H 1.48504 * 109.46963 * 269.99690 * 3 2 1
5 5 H 1.48499 * 109.47242 * 29.99484 * 3 2 1
6 6 H 1.48500 * 109.47019 * 149.99589 * 3 2 1
7 7 C 1.37875 * 120.00016 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00026 * 0.02562 * 7 2 1
9 9 C 1.50697 * 119.99963 * 180.02562 * 7 2 1
10 10 H 1.08996 * 109.53593 * 60.09975 * 9 7 2
11 11 C 1.53123 * 109.50478 * 300.00322 * 9 7 2
12 12 C 1.53120 * 109.21163 * 182.37233 * 11 9 7
13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9
14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11
15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12
16 16 C 1.50693 * 109.47321 * 45.79054 * 15 14 13
17 17 C 1.38603 * 120.80310 * 269.72409 * 16 15 14
18 18 N 1.32325 * 119.10429 * 179.71570 * 17 16 15
19 19 C 1.31800 * 120.82284 * 0.56922 * 18 17 16
20 20 C 1.50698 * 119.12680 * 179.68280 * 19 18 17
21 21 F 1.39898 * 109.47190 * 285.02160 * 20 19 18
22 22 F 1.39900 * 109.46831 * 45.01930 * 20 19 18
23 23 F 1.39903 * 109.47069 * 165.02114 * 20 19 18
24 24 N 1.31796 * 121.74595 * 359.70345 * 19 18 17
25 25 C 1.32331 * 120.82511 * 0.02562 * 24 19 18
26 26 C 1.46848 * 111.19518 * 61.74755 * 14 13 12
27 27 H 0.96998 * 120.00135 * 0.02562 * 1 2 3
28 28 H 1.09002 * 109.52319 * 302.31026 * 11 9 7
29 29 H 1.08995 * 109.52318 * 62.43708 * 11 9 7
30 30 H 1.09004 * 109.49930 * 177.63007 * 12 11 9
31 31 H 1.08997 * 109.50353 * 297.74224 * 12 11 9
32 32 H 1.09003 * 109.44926 * 180.83262 * 13 12 11
33 33 H 1.09002 * 109.45193 * 60.88225 * 13 12 11
34 34 H 1.09002 * 109.47245 * 165.79508 * 15 14 13
35 35 H 1.09007 * 109.47066 * 285.78934 * 15 14 13
36 36 H 1.07998 * 120.44183 * 359.97438 * 17 16 15
37 37 H 1.07995 * 120.44682 * 179.97438 * 25 24 19
38 38 H 1.09006 * 109.46097 * 178.23945 * 26 14 13
39 39 H 1.08996 * 109.46046 * 58.26729 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0005
9 6 3.5115 -1.1940 0.0011
10 1 3.8756 -0.6818 0.8916
11 6 4.0232 -0.4725 -1.2488
12 6 5.5533 -0.5281 -1.2717
13 6 6.0050 -1.9912 -1.2386
14 7 5.4908 -2.6370 -0.0241
15 6 6.0188 -4.0012 0.1106
16 6 7.5014 -3.9950 -0.1590
17 6 7.9905 -4.1928 -1.4407
18 7 9.2985 -4.1751 -1.6403
19 6 10.1322 -3.9838 -0.6375
20 6 11.6148 -3.9780 -0.9070
21 9 12.0557 -5.2889 -1.1176
22 9 11.8788 -3.2088 -2.0454
23 9 12.2864 -3.4310 0.1916
24 7 9.7034 -3.7979 0.5948
25 6 8.4090 -3.7975 0.8697
26 6 4.0225 -2.6365 -0.0035
27 1 -0.4850 0.8400 -0.0004
28 1 3.6276 -0.9613 -2.1391
29 1 3.6968 0.5672 -1.2285
30 1 5.9210 -0.0525 -2.1809
31 1 5.9494 -0.0053 -0.4012
32 1 7.0941 -2.0350 -1.2398
33 1 5.6199 -2.5100 -2.1165
34 1 5.8349 -4.3638 1.1220
35 1 5.5219 -4.6555 -0.6058
36 1 7.3131 -4.3550 -2.2660
37 1 8.0644 -3.6449 1.8817
38 1 3.6717 -3.1489 0.8924
39 1 3.6468 -3.1521 -0.8872
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001141462654.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:23
Heat of formation + Delta-G solvation = -110.477639 kcal
Electronic energy + Delta-G solvation = -26306.538603 eV
Core-core repulsion = 22026.742608 eV
Total energy + Delta-G solvation = -4279.795995 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.125 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-51.33775 -48.86559 -48.82426 -42.55891 -39.99097 -36.36147 -35.16922 -34.51549
-33.08946 -31.99672 -29.43400 -26.93142 -26.58023 -25.99327 -24.32062 -23.39480
-22.37629 -20.55198 -20.19446 -19.89084 -19.77108 -18.82335 -18.53273 -17.43024
-16.77370 -16.49057 -16.22756 -15.88996 -15.62072 -15.50709 -15.28099 -15.24449
-15.23594 -14.96747 -14.95128 -14.89950 -14.79105 -14.73582 -13.98884 -13.78496
-13.68358 -13.12231 -12.87866 -12.75760 -12.50845 -12.19137 -12.06018 -11.92260
-11.75079 -11.44785 -11.00325 -10.86646 -10.79027 -10.63687 -10.59065 -9.21727
-8.28814 -6.31467 -0.76226 -0.20527 1.04408 1.30757 1.37498 1.47220
2.14503 2.19627 2.33396 2.41706 3.02458 3.07933 3.16647 3.31191
3.35452 3.51152 3.52285 3.63987 3.96564 4.06839 4.26780 4.43334
4.48513 4.59556 4.67055 4.75988 4.78858 4.80359 4.95624 5.00363
5.02146 5.14025 5.21129 5.47451 5.51523 5.64860 5.74301 6.09824
6.16961 6.35158 6.48314 6.77138 7.34674 8.87804
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.030476 B = 0.002903 C = 0.002807
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 918.532582 B = 9643.022078 C = 9972.601165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.950 5.950
2 C 0.014 3.986
3 Si 0.947 3.053
4 H -0.271 1.271
5 H -0.303 1.303
6 H -0.248 1.248
7 C -0.514 4.514
8 H 0.039 0.961
9 C 0.019 3.981
10 H 0.025 0.975
11 C -0.122 4.122
12 C -0.116 4.116
13 C 0.060 3.940
14 N -0.540 5.540
15 C 0.098 3.902
16 C -0.137 4.137
17 C 0.157 3.843
18 N -0.493 5.493
19 C 0.213 3.787
20 C 0.550 3.450
21 F -0.165 7.165
22 F -0.163 7.163
23 F -0.158 7.158
24 N -0.492 5.492
25 C 0.168 3.832
26 C 0.090 3.910
27 H 0.264 0.736
28 H 0.052 0.948
29 H 0.030 0.970
30 H 0.075 0.925
31 H 0.058 0.942
32 H 0.073 0.927
33 H 0.045 0.955
34 H 0.113 0.887
35 H 0.070 0.930
36 H 0.203 0.797
37 H 0.209 0.791
38 H 0.072 0.928
39 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.771 -9.697 -1.760 23.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.183 4.183
3 Si 0.775 3.225
4 H -0.197 1.197
5 H -0.232 1.232
6 H -0.172 1.172
7 C -0.552 4.552
8 H 0.057 0.943
9 C 0.000 4.000
10 H 0.043 0.957
11 C -0.160 4.160
12 C -0.153 4.153
13 C -0.067 4.067
14 N -0.265 5.265
15 C -0.030 4.030
16 C -0.141 4.141
17 C -0.009 4.009
18 N -0.206 5.206
19 C -0.058 4.058
20 C 0.493 3.507
21 F -0.147 7.147
22 F -0.144 7.144
23 F -0.139 7.139
24 N -0.206 5.206
25 C 0.004 3.996
26 C -0.037 4.037
27 H 0.073 0.927
28 H 0.071 0.929
29 H 0.048 0.952
30 H 0.094 0.906
31 H 0.077 0.923
32 H 0.092 0.908
33 H 0.063 0.937
34 H 0.131 0.869
35 H 0.088 0.912
36 H 0.220 0.780
37 H 0.226 0.774
38 H 0.091 0.909
39 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 22.812 -9.333 -1.539 24.696
hybrid contribution -1.333 0.555 -0.619 1.571
sum 21.479 -8.778 -2.158 23.304
Atomic orbital electron populations
1.70038 1.08137 1.27867 1.53075 1.25791 0.95282 1.02751 0.94482
0.85867 0.79114 0.79153 0.78359 1.19737 1.23157 1.17213 1.21344
0.91483 0.92982 1.49437 0.94278 1.19083 0.92802 0.94022 0.94140
0.95677 1.21931 0.95392 0.98866 0.99822 1.21634 0.95030 0.96796
1.01884 1.22135 0.98958 0.94590 0.91062 1.62135 1.08756 1.17158
1.38474 1.21121 0.86978 0.90083 1.04838 1.21909 0.99181 0.97690
0.95366 1.23743 0.90084 0.89644 0.97417 1.68003 1.05375 1.12675
1.34563 1.22533 0.95059 1.00636 0.87566 1.17098 0.84572 0.74439
0.74553 1.93245 1.90433 1.36284 1.94707 1.93250 1.94556 1.75384
1.51246 1.93255 1.81511 1.85560 1.53596 1.68064 1.19539 1.12385
1.20571 1.23753 0.85477 0.88389 1.02009 1.21814 0.84712 0.97001
1.00219 0.92690 0.92902 0.95173 0.90604 0.92287 0.90848 0.93730
0.86856 0.91242 0.78038 0.77404 0.90928 0.95317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16
2 C 0.01 0.78 5.45 84.65 0.46 1.24 16
3 Si 0.95 44.33 24.35 68.60 1.67 46.00 16
4 H -0.27 -12.17 6.89 99.48 0.69 -11.48 16
5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16
6 H -0.25 -10.85 6.53 99.48 0.65 -10.20 16
7 C -0.51 -27.61 9.15 25.60 0.23 -27.37 16
8 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16
9 C 0.02 0.79 1.85 -11.49 -0.02 0.77 16
10 H 0.03 1.13 7.21 -2.39 -0.02 1.11 16
11 C -0.12 -4.72 4.73 30.68 0.15 -4.57 16
12 C -0.12 -3.42 6.11 30.69 0.19 -3.24 16
13 C 0.06 1.46 4.61 86.37 0.40 1.85 16
14 N -0.54 -13.49 4.80 -900.66 -4.32 -17.81 16
15 C 0.10 1.61 5.47 85.55 0.47 2.07 16
16 C -0.14 -2.18 4.13 -19.69 -0.08 -2.26 16
17 C 0.16 2.58 9.17 84.71 0.78 3.35 16
18 N -0.49 -10.41 10.21 -187.85 -1.92 -12.32 16
19 C 0.21 4.75 7.09 138.75 0.98 5.73 16
20 C 0.55 11.89 3.49 71.24 0.25 12.14 16
21 F -0.17 -3.50 17.30 44.97 0.78 -2.73 16
22 F -0.16 -3.60 17.20 44.97 0.77 -2.83 16
23 F -0.16 -3.46 16.87 44.97 0.76 -2.70 16
24 N -0.49 -10.49 9.84 -187.85 -1.85 -12.34 16
25 C 0.17 2.81 11.01 84.70 0.93 3.74 16
26 C 0.09 2.95 4.65 86.33 0.40 3.36 16
27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
29 H 0.03 1.26 3.34 -2.39 -0.01 1.25 16
30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
32 H 0.07 1.59 5.65 -2.39 -0.01 1.57 16
33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16
34 H 0.11 1.54 8.10 -2.39 -0.02 1.52 16
35 H 0.07 1.00 8.04 -2.38 -0.02 0.98 16
36 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16
37 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16
38 H 0.07 2.36 8.12 -2.38 -0.02 2.35 16
39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16
Total: -1.00 -65.62 325.55 2.33 -63.29
By element:
Atomic # 1 Polarization: 1.46 SS G_CDS: 1.01 Total: 2.47 kcal
Atomic # 6 Polarization: -8.30 SS G_CDS: 5.13 Total: -3.17 kcal
Atomic # 7 Polarization: -92.55 SS G_CDS: -7.79 Total: -100.34 kcal
Atomic # 9 Polarization: -10.57 SS G_CDS: 2.31 Total: -8.26 kcal
Atomic # 14 Polarization: 44.33 SS G_CDS: 1.67 Total: 46.00 kcal
Total: -65.62 2.33 -63.29 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141462654.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.184 kcal
(2) G-P(sol) polarization free energy of solvation -65.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds