Wall clock time and date at job start Tue Mar 31 2020 10:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48498 * 109.46994 * 239.99815 * 3 2 1 5 5 H 1.48502 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47010 * 119.99780 * 3 2 1 7 7 C 1.37878 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99729 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99688 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50273 * 299.92012 * 9 7 2 11 11 C 1.53112 * 109.50426 * 60.00081 * 9 7 2 12 12 C 1.53120 * 109.16264 * 177.63214 * 11 9 7 13 13 C 1.53043 * 109.27798 * 302.34621 * 12 11 9 14 14 N 1.46848 * 109.51992 * 59.17565 * 13 12 11 15 15 C 1.46906 * 110.99750 * 174.16249 * 14 13 12 16 16 C 1.50703 * 109.47109 * 66.04607 * 15 14 13 17 17 C 1.38604 * 120.80037 * 269.72354 * 16 15 14 18 18 N 1.32332 * 119.10212 * 179.72033 * 17 16 15 19 19 C 1.31792 * 120.81849 * 0.56297 * 18 17 16 20 20 C 1.50703 * 119.12364 * 179.68754 * 19 18 17 21 21 F 1.39905 * 109.46651 * 285.02156 * 20 19 18 22 22 F 1.39895 * 109.47182 * 45.02021 * 20 19 18 23 23 F 1.39898 * 109.47259 * 165.02356 * 20 19 18 24 24 N 1.31797 * 121.75740 * 359.71040 * 19 18 17 25 25 C 1.32336 * 120.81321 * 359.97438 * 24 19 18 26 26 C 1.46840 * 111.20084 * 298.25560 * 14 13 12 27 27 H 0.97003 * 119.99605 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.52400 * 57.72413 * 11 9 7 29 29 H 1.09000 * 109.57842 * 297.57096 * 11 9 7 30 30 H 1.09002 * 109.50462 * 182.40703 * 12 11 9 31 31 H 1.08995 * 109.50102 * 62.28471 * 12 11 9 32 32 H 1.09007 * 109.45770 * 299.16462 * 13 12 11 33 33 H 1.08994 * 109.46236 * 179.19372 * 13 12 11 34 34 H 1.08992 * 109.47459 * 186.04525 * 15 14 13 35 35 H 1.09004 * 109.47040 * 306.04676 * 15 14 13 36 36 H 1.08002 * 120.44530 * 359.97438 * 17 16 15 37 37 H 1.08009 * 120.44582 * 179.97438 * 25 24 19 38 38 H 1.09006 * 109.46536 * 181.75782 * 26 14 13 39 39 H 1.08998 * 109.47053 * 301.73095 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6248 -2.5578 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9343 -1.2720 13 6 0.6938 -5.0571 -1.2389 14 7 1.5097 -4.9349 -0.0240 15 6 2.4265 -6.0747 0.1113 16 6 3.4383 -6.0408 -1.0050 17 6 3.1942 -6.6914 -2.2043 18 7 4.1036 -6.6350 -3.1639 19 6 5.2336 -5.9805 -2.9857 20 6 6.2456 -5.9469 -4.1018 21 9 6.8919 -7.1851 -4.1826 22 9 5.5966 -5.6797 -5.3119 23 9 7.1880 -4.9448 -3.8469 24 7 5.5023 -5.3549 -1.8572 25 6 4.6377 -5.3627 -0.8553 26 6 2.2441 -3.6635 -0.0033 27 1 -0.4850 0.8401 -0.0004 28 1 0.9925 -2.4835 -2.1398 29 1 -0.3666 -1.7789 -1.2306 30 1 -0.9407 -4.0161 -2.1816 31 1 -0.9968 -4.0156 -0.4018 32 1 1.3361 -4.9834 -2.1166 33 1 0.1865 -6.0218 -1.2403 34 1 2.9413 -6.0152 1.0701 35 1 1.8601 -7.0047 0.0601 36 1 2.2724 -7.2336 -2.3550 37 1 4.8642 -4.8484 0.0670 38 1 2.8628 -3.6160 0.8929 39 1 2.8791 -3.5963 -0.8867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141462655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:25 Heat of formation + Delta-G solvation = -118.261013 kcal Electronic energy + Delta-G solvation = -26856.120250 eV Core-core repulsion = 22575.986742 eV Total energy + Delta-G solvation = -4280.133508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.38284 -48.90425 -48.87348 -42.58907 -39.87802 -36.24356 -35.19787 -34.45076 -32.64522 -31.71548 -29.21686 -27.06920 -26.56503 -26.02075 -24.23529 -23.18325 -22.67723 -20.38971 -20.17122 -19.94599 -19.81542 -18.54819 -18.47011 -16.96473 -16.82412 -16.41189 -16.39175 -15.83031 -15.75615 -15.65131 -15.44284 -15.28757 -15.01194 -14.99901 -14.99513 -14.76727 -14.41571 -14.32214 -14.07482 -13.77500 -13.33245 -12.93680 -12.84363 -12.57960 -12.40671 -12.38487 -12.24386 -11.82070 -11.69528 -11.42780 -11.06947 -10.68513 -10.68268 -10.65166 -10.38553 -9.28401 -8.09717 -6.22904 -0.76028 -0.22086 1.01550 1.39639 1.40483 1.47482 2.13881 2.17064 2.39452 2.40936 3.07764 3.13519 3.18050 3.31947 3.33136 3.47758 3.62097 3.68531 4.18980 4.24835 4.34306 4.45863 4.57420 4.69310 4.79692 4.83516 4.89150 4.98967 5.02634 5.08860 5.16356 5.39783 5.50099 5.51567 5.62289 5.92722 6.08199 6.18268 6.27090 6.42358 6.46422 6.90109 7.45157 8.94319 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.004129 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.501957 B = 6779.998666 C = 7894.918101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.052 3.948 10 H 0.004 0.996 11 C -0.106 4.106 12 C -0.113 4.113 13 C 0.060 3.940 14 N -0.526 5.526 15 C 0.099 3.901 16 C -0.177 4.177 17 C 0.158 3.842 18 N -0.493 5.493 19 C 0.209 3.791 20 C 0.550 3.450 21 F -0.162 7.162 22 F -0.163 7.163 23 F -0.160 7.160 24 N -0.497 5.497 25 C 0.153 3.847 26 C 0.079 3.921 27 H 0.260 0.740 28 H 0.010 0.990 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.019 0.981 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.215 0.785 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -17.119 -3.181 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.033 3.967 10 H 0.022 0.978 11 C -0.145 4.145 12 C -0.151 4.151 13 C -0.067 4.067 14 N -0.247 5.247 15 C -0.030 4.030 16 C -0.183 4.183 17 C -0.007 4.007 18 N -0.206 5.206 19 C -0.062 4.062 20 C 0.494 3.506 21 F -0.144 7.144 22 F -0.145 7.145 23 F -0.141 7.141 24 N -0.211 5.211 25 C -0.012 4.012 26 C -0.048 4.048 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.231 0.769 37 H 0.213 0.787 38 H 0.088 0.912 39 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 6.584 -16.963 -3.525 18.535 hybrid contribution 0.541 1.606 -0.392 1.739 sum 7.126 -15.358 -3.916 17.377 Atomic orbital electron populations 1.70009 1.06998 1.27023 1.51196 1.25630 0.95576 1.02016 0.94923 0.85812 0.78563 0.79785 0.78701 1.20376 1.20937 1.19360 1.21490 0.92863 0.92354 1.50705 0.93299 1.18582 0.93053 0.91311 0.93730 0.97821 1.21475 0.99061 0.96795 0.97126 1.21593 0.97742 0.94603 1.01132 1.22175 0.94823 0.99937 0.89773 1.62376 1.22527 1.01836 1.38000 1.21584 0.90532 0.96067 0.94813 1.23089 0.97975 0.96741 1.00526 1.23870 0.97272 0.92958 0.86597 1.67976 1.01593 1.17001 1.34068 1.22532 0.93435 0.96905 0.93369 1.17087 0.79074 0.74432 0.80031 1.93242 1.82282 1.42518 1.96324 1.93244 1.81282 1.93633 1.46317 1.93250 1.65936 1.60973 1.93974 1.67988 1.35312 1.17144 1.00612 1.23723 0.88365 0.92176 0.96911 1.22037 0.95384 0.88865 0.98555 0.93118 0.97145 0.92670 0.91614 0.92380 0.96266 0.87380 0.87178 0.85397 0.76898 0.78742 0.91198 0.97348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.18 11.35 21.45 0.24 -51.93 16 2 C 0.02 0.97 5.30 84.65 0.45 1.42 16 3 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -28.82 8.57 25.60 0.22 -28.60 16 8 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 9 C 0.05 2.48 2.26 -11.49 -0.03 2.45 16 10 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 11 C -0.11 -4.89 5.02 30.67 0.15 -4.73 16 12 C -0.11 -3.88 6.09 30.65 0.19 -3.70 16 13 C 0.06 1.60 4.87 86.33 0.42 2.02 16 14 N -0.53 -14.39 4.86 -900.90 -4.38 -18.77 16 15 C 0.10 1.70 5.59 85.56 0.48 2.18 16 16 C -0.18 -3.58 4.03 -19.69 -0.08 -3.66 16 17 C 0.16 3.15 9.50 84.70 0.80 3.96 16 18 N -0.49 -12.70 10.21 -187.84 -1.92 -14.62 16 19 C 0.21 5.89 7.09 138.75 0.98 6.87 16 20 C 0.55 14.81 3.49 71.24 0.25 15.06 16 21 F -0.16 -4.06 17.30 44.97 0.78 -3.28 16 22 F -0.16 -4.47 17.20 44.97 0.77 -3.70 16 23 F -0.16 -4.48 16.87 44.97 0.76 -3.72 16 24 N -0.50 -14.18 9.84 -187.84 -1.85 -16.02 16 25 C 0.15 3.66 9.36 84.70 0.79 4.46 16 26 C 0.08 2.87 3.81 86.33 0.33 3.20 16 27 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.05 2.93 6.15 -2.39 -0.01 2.92 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.02 0.54 6.58 -2.38 -0.02 0.52 16 33 H 0.11 1.98 8.06 -2.39 -0.02 1.96 16 34 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 35 H 0.13 1.36 8.02 -2.38 -0.02 1.34 16 36 H 0.21 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.20 3.91 8.05 -2.91 -0.02 3.89 16 38 H 0.07 2.41 8.12 -2.38 -0.02 2.40 16 39 H 0.01 0.32 6.47 -2.39 -0.02 0.31 16 Total: -1.00 -65.24 329.73 2.48 -62.76 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.08 Total: 2.81 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.96 Total: 0.93 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -7.90 Total: -101.34 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 2.31 Total: -10.69 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -65.24 2.48 -62.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141462655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.501 kcal (2) G-P(sol) polarization free energy of solvation -65.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds