Wall clock time and date at job start Tue Mar 31 2020 10:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99928 * 2 1 4 4 H 1.48502 * 109.47293 * 270.00553 * 3 2 1 5 5 H 1.48503 * 109.47067 * 30.00555 * 3 2 1 6 6 H 1.48504 * 109.47247 * 150.00377 * 3 2 1 7 7 C 1.37880 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50599 * 59.92720 * 9 7 2 11 11 C 1.53113 * 109.50406 * 299.80362 * 9 7 2 12 12 C 1.53125 * 109.16000 * 182.40705 * 11 9 7 13 13 C 1.53037 * 109.27681 * 57.65501 * 12 11 9 14 14 N 1.46840 * 109.52348 * 300.81570 * 13 12 11 15 15 C 1.46900 * 110.99961 * 185.83830 * 14 13 12 16 16 C 1.50697 * 109.46918 * 45.79714 * 15 14 13 17 17 C 1.38611 * 120.07773 * 94.99387 * 16 15 14 18 18 C 1.38886 * 117.96688 * 179.72370 * 17 16 15 19 19 C 1.38601 * 117.97154 * 0.28215 * 18 17 16 20 20 C 1.50696 * 120.07938 * 180.02562 * 19 18 17 21 21 F 1.39897 * 109.47736 * 89.99340 * 20 19 18 22 22 F 1.39900 * 109.47336 * 210.00105 * 20 19 18 23 23 F 1.39904 * 109.46810 * 329.99479 * 20 19 18 24 24 N 1.31933 * 119.84756 * 359.97438 * 19 18 17 25 25 N 1.28349 * 122.18519 * 0.02562 * 24 19 18 26 26 C 1.46853 * 111.19511 * 61.74758 * 14 13 12 27 27 H 0.96995 * 120.00115 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.52471 * 302.30741 * 11 9 7 29 29 H 1.08993 * 109.52577 * 62.43843 * 11 9 7 30 30 H 1.09007 * 109.50146 * 177.59591 * 12 11 9 31 31 H 1.08993 * 109.50034 * 297.71225 * 12 11 9 32 32 H 1.09009 * 109.45655 * 180.80270 * 13 12 11 33 33 H 1.08998 * 109.46512 * 60.83827 * 13 12 11 34 34 H 1.08995 * 109.47565 * 285.79788 * 15 14 13 35 35 H 1.09002 * 109.47146 * 165.79363 * 15 14 13 36 36 H 1.08002 * 121.01816 * 0.02562 * 17 16 15 37 37 H 1.08001 * 121.01268 * 180.25517 * 18 17 16 38 38 H 1.08996 * 109.46179 * 58.27162 * 26 14 13 39 39 H 1.08994 * 109.46306 * 178.23976 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6229 -2.5567 -0.8894 11 6 0.3747 -2.5834 1.2522 12 6 -0.3408 -3.9370 1.2747 13 6 0.6992 -5.0590 1.2372 14 7 1.5113 -4.9348 0.0201 15 6 2.4284 -6.0738 -0.1194 16 6 1.6827 -7.3552 0.1509 17 6 1.1478 -8.0827 -0.9008 18 6 0.4742 -9.2599 -0.6022 19 6 0.3733 -9.6315 0.7293 20 6 -0.3469 -10.9001 1.1069 21 9 0.5604 -11.9649 1.1219 22 9 -0.9149 -10.7536 2.3770 23 9 -1.3552 -11.1598 0.1724 24 7 0.9101 -8.8723 1.6653 25 7 1.5327 -7.7843 1.3895 26 6 2.2450 -3.6628 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 0.9988 -2.4866 2.1406 29 1 -0.3625 -1.7809 1.2357 30 1 -0.9333 -4.0203 2.1859 31 1 -0.9945 -4.0175 0.4063 32 1 0.1924 -6.0241 1.2387 33 1 1.3439 -4.9861 2.1130 34 1 3.2458 -5.9718 0.5944 35 1 2.8309 -6.0944 -1.1321 36 1 1.2559 -7.7469 -1.9216 37 1 0.0418 -9.8672 -1.3837 38 1 2.8824 -3.5965 0.8805 39 1 2.8610 -3.6138 -0.8990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141495657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:40 Heat of formation + Delta-G solvation = -106.212365 kcal Electronic energy + Delta-G solvation = -26190.044742 eV Core-core repulsion = 21910.433703 eV Total energy + Delta-G solvation = -4279.611039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.33281 -48.85040 -48.80317 -42.51606 -39.83371 -36.26075 -34.68388 -34.57222 -33.03370 -31.68196 -29.05914 -27.41161 -26.88483 -25.32349 -24.34315 -23.47861 -22.63408 -20.40668 -20.06824 -19.73623 -19.70701 -18.47124 -18.36797 -17.27102 -17.04934 -16.46023 -15.86304 -15.74000 -15.66082 -15.59240 -15.42531 -15.22355 -15.06845 -14.95044 -14.93906 -14.90869 -14.48101 -14.19233 -14.00528 -13.61542 -13.47857 -12.98792 -12.82780 -12.64976 -12.54956 -12.17538 -11.96706 -11.74644 -11.50202 -11.41447 -11.26610 -11.02297 -10.88797 -10.66159 -10.36793 -9.26924 -8.06398 -6.19893 -0.69320 -0.42805 1.17255 1.43292 1.44669 1.53968 2.00421 2.25211 2.44852 2.61110 2.94856 3.12457 3.19479 3.21537 3.29211 3.43050 3.70073 3.78259 4.08240 4.16912 4.30658 4.37570 4.44874 4.59063 4.62066 4.71049 4.82523 4.86867 4.92706 4.95349 5.04031 5.15612 5.33231 5.49972 5.65232 5.89824 6.07686 6.15672 6.17790 6.43961 6.92896 7.26387 7.48204 8.98432 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.035864 B = 0.002664 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.535983 B =10507.092447 C =10765.940234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.054 3.946 10 H 0.004 0.996 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.075 3.925 14 N -0.532 5.532 15 C 0.100 3.900 16 C 0.095 3.905 17 C -0.081 4.081 18 C -0.065 4.065 19 C -0.042 4.042 20 C 0.539 3.461 21 F -0.167 7.167 22 F -0.172 7.172 23 F -0.159 7.159 24 N -0.225 5.225 25 N -0.257 5.257 26 C 0.081 3.919 27 H 0.259 0.741 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.132 0.868 36 H 0.205 0.795 37 H 0.203 0.797 38 H 0.018 0.982 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -22.310 -3.807 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.035 3.965 10 H 0.022 0.978 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.053 4.053 14 N -0.258 5.258 15 C -0.029 4.029 16 C -0.048 4.048 17 C -0.110 4.110 18 C -0.093 4.093 19 C -0.189 4.189 20 C 0.483 3.517 21 F -0.149 7.149 22 F -0.153 7.153 23 F -0.140 7.140 24 N -0.067 5.067 25 N -0.101 5.101 26 C -0.046 4.046 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.222 0.778 37 H 0.220 0.780 38 H 0.037 0.963 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.872 -21.979 -2.569 22.146 hybrid contribution 0.318 0.781 -0.277 0.888 sum 1.190 -21.198 -2.846 21.421 Atomic orbital electron populations 1.70030 1.07195 1.27015 1.51319 1.25707 0.95606 1.02305 0.94889 0.85642 0.78708 0.79563 0.78234 1.20002 1.21312 1.19320 1.21522 0.93143 0.91961 1.50560 0.92638 1.18575 0.92970 0.91341 0.93580 0.97791 1.21476 0.99229 0.95679 0.97839 1.21585 0.97487 0.95178 1.00567 1.21934 0.95174 0.97764 0.90471 1.62246 1.23906 1.01842 1.37765 1.21251 0.92874 0.84222 1.04544 1.23201 0.93851 0.96964 0.90822 1.22805 0.92730 0.92312 1.03140 1.22607 0.94369 0.96685 0.95638 1.22891 1.03225 0.97932 0.94879 1.17415 0.76959 0.82437 0.74915 1.93252 1.67093 1.58343 1.96193 1.93242 1.85439 1.95709 1.40907 1.93247 1.61164 1.94532 1.65067 1.72902 1.03558 0.99542 1.30690 1.73168 1.10874 1.05545 1.20490 1.22066 0.95358 0.87602 0.99587 0.93150 0.96100 0.92319 0.92257 0.92807 0.91931 0.95813 0.92638 0.85033 0.77843 0.77986 0.96333 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 11.36 21.45 0.24 -52.31 16 2 C 0.01 0.75 5.30 84.66 0.45 1.19 16 3 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.53 -28.62 8.56 25.60 0.22 -28.40 16 8 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.05 2.65 2.26 -11.49 -0.03 2.62 16 10 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 11 C -0.10 -4.99 5.03 30.67 0.15 -4.84 16 12 C -0.11 -4.38 6.09 30.65 0.19 -4.19 16 13 C 0.07 2.63 4.72 86.33 0.41 3.04 16 14 N -0.53 -17.40 4.80 -900.94 -4.32 -21.73 16 15 C 0.10 2.38 5.62 85.56 0.48 2.86 16 16 C 0.09 2.14 5.00 42.63 0.21 2.35 16 17 C -0.08 -1.19 9.86 22.51 0.22 -0.97 16 18 C -0.07 -0.89 9.54 22.51 0.21 -0.67 16 19 C -0.04 -0.86 6.37 42.63 0.27 -0.59 16 20 C 0.54 10.11 3.45 71.23 0.25 10.35 16 21 F -0.17 -3.11 17.30 44.97 0.78 -2.33 16 22 F -0.17 -3.91 17.06 44.97 0.77 -3.14 16 23 F -0.16 -2.48 16.51 44.97 0.74 -1.73 16 24 N -0.22 -6.12 11.14 -47.63 -0.53 -6.65 16 25 N -0.26 -7.25 9.82 -47.62 -0.47 -7.72 16 26 C 0.08 3.15 4.65 86.33 0.40 3.55 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 3.19 6.16 -2.39 -0.01 3.18 16 30 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.09 5.75 -2.38 -0.01 2.08 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.40 8.08 -2.39 -0.02 1.38 16 35 H 0.13 2.25 8.05 -2.39 -0.02 2.23 16 36 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.20 1.07 7.68 -2.91 -0.02 1.05 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 2.77 8.12 -2.39 -0.02 2.75 16 Total: -1.00 -65.12 332.09 3.75 -61.37 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 1.08 Total: 2.96 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.44 Total: -13.71 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -5.08 Total: -88.41 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 2.29 Total: -7.20 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -65.12 3.75 -61.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141495657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.843 kcal (2) G-P(sol) polarization free energy of solvation -65.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds