Wall clock time and date at job start Tue Mar 31 2020 10:35:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86803 * 119.99729 * 2 1
4 4 H 1.48501 * 109.47136 * 269.99304 * 3 2 1
5 5 H 1.48494 * 109.47577 * 29.99786 * 3 2 1
6 6 H 1.48503 * 109.47145 * 149.99984 * 3 2 1
7 7 C 1.37872 * 120.00060 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99933 * 180.02562 * 7 2 1
9 9 C 1.50693 * 120.00317 * 0.02562 * 7 2 1
10 10 C 1.53002 * 109.47700 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47470 * 179.97438 * 10 9 7
12 12 N 1.46501 * 109.47104 * 179.97438 * 11 10 9
13 13 C 1.34775 * 119.99637 * 180.02562 * 12 11 10
14 14 O 1.21656 * 120.00420 * 0.02562 * 13 12 11
15 15 C 1.46719 * 119.99524 * 180.02562 * 13 12 11
16 16 N 1.29761 * 126.55036 * 359.95905 * 15 13 12
17 17 N 1.39157 * 112.70180 * 180.02562 * 16 15 13
18 18 C 1.40004 * 124.34604 * 180.02562 * 17 16 15
19 19 C 1.38893 * 120.07123 * 179.69843 * 18 17 16
20 20 C 1.38095 * 119.92718 * 179.73974 * 19 18 17
21 21 C 1.38290 * 120.07484 * 0.51242 * 20 19 18
22 22 C 1.38292 * 120.14130 * 359.75985 * 21 20 19
23 23 C 1.38105 * 120.06929 * 359.97438 * 22 21 20
24 24 C 1.35192 * 111.34425 * 0.08398 * 17 16 15
25 25 O 1.21245 * 127.47856 * 179.97438 * 24 17 16
26 26 C 1.51447 * 126.54497 * 179.97438 * 15 13 12
27 27 H 0.97002 * 120.00011 * 0.02562 * 1 2 3
28 28 H 1.08996 * 109.47139 * 59.99213 * 9 7 2
29 29 H 1.09004 * 109.47087 * 299.99581 * 9 7 2
30 30 H 1.09003 * 109.46801 * 59.99129 * 10 9 7
31 31 H 1.09004 * 109.46622 * 300.00005 * 10 9 7
32 32 H 1.09000 * 109.46689 * 59.99951 * 11 10 9
33 33 H 1.08996 * 109.47013 * 300.00275 * 11 10 9
34 34 H 0.96998 * 119.99941 * 0.02562 * 12 11 10
35 35 H 1.08002 * 120.03174 * 359.97356 * 19 18 17
36 36 H 1.08004 * 119.96322 * 180.25332 * 20 19 18
37 37 H 1.07996 * 119.92897 * 179.74428 * 21 20 19
38 38 H 1.07997 * 119.96361 * 179.97438 * 22 21 20
39 39 H 1.07998 * 120.03818 * 180.02562 * 23 22 21
40 40 H 1.09002 * 110.58218 * 298.51725 * 26 15 13
41 41 H 1.08997 * 110.57982 * 61.26288 * 26 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4403 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4804 -4.9871 0.0012
12 7 2.4324 -6.1006 0.0006
13 6 1.9831 -7.3712 0.0005
14 8 0.7871 -7.5936 0.0004
15 6 2.9366 -8.4864 0.0004
16 7 4.2311 -8.3963 -0.0003
17 7 4.8560 -9.6396 -0.0007
18 6 6.2435 -9.8263 -0.0009
19 6 6.7730 -11.1104 0.0050
20 6 8.1420 -11.2911 -0.0007
21 6 8.9857 -10.1954 -0.0016
22 6 8.4618 -8.9156 -0.0018
23 6 7.0935 -8.7280 -0.0016
24 6 3.9518 -10.6447 -0.0021
25 8 4.1738 -11.8367 -0.0032
26 6 2.5979 -9.9625 0.0008
27 1 -0.4850 0.8401 -0.0004
28 1 0.6247 -2.5570 -0.8896
29 1 0.6242 -2.5567 0.8904
30 1 2.8721 -3.6042 0.8905
31 1 2.8720 -3.6043 -0.8895
32 1 0.8534 -5.0450 -0.8886
33 1 0.8540 -5.0445 0.8913
34 1 3.3861 -5.9233 0.0002
35 1 6.1146 -11.9665 0.0102
36 1 8.5544 -12.2894 -0.0003
37 1 10.0560 -10.3395 -0.0019
38 1 9.1233 -8.0619 -0.0021
39 1 6.6849 -7.7283 -0.0022
40 1 2.0376 -10.2268 0.8977
41 1 2.0338 -10.2264 -0.8937
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001147889671.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:35:12
Heat of formation + Delta-G solvation = 9.968699 kcal
Electronic energy + Delta-G solvation = -24312.720054 eV
Core-core repulsion = 20580.003744 eV
Total energy + Delta-G solvation = -3732.716310 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.16102 -39.84951 -39.06368 -38.01443 -35.67608 -34.12887 -33.42053 -31.42210
-31.32574 -29.83015 -29.68768 -27.12567 -24.87804 -23.75646 -23.05053 -22.13407
-21.15368 -20.79449 -19.72728 -18.41577 -17.61505 -17.12912 -16.60875 -16.54302
-15.75264 -15.68680 -15.54773 -15.30569 -14.74677 -14.50011 -14.33759 -14.21950
-13.90459 -13.83747 -13.71171 -13.26921 -12.53684 -12.43713 -12.35193 -11.95071
-11.86643 -11.64685 -11.51226 -10.94908 -10.86855 -10.70658 -10.55676 -10.46648
-10.23022 -9.95726 -9.51713 -9.34109 -9.18476 -9.08880 -8.45562 -8.41506
-6.06226 -4.09446 0.32812 0.76286 1.00974 1.54850 1.92751 2.61130
2.83916 3.22991 3.28282 3.35072 3.37605 3.46568 3.84894 4.13875
4.40939 4.49766 4.59156 4.68464 4.78307 4.83457 5.03127 5.04044
5.13460 5.29675 5.29892 5.54417 5.63319 5.65940 5.82811 5.92797
6.02317 6.06025 6.15820 6.17457 6.47970 6.57409 6.65481 6.81819
6.89605 7.12937 7.35216 7.57573 7.68953 7.89879 7.92447 8.32734
8.97051 9.55167 11.04977
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.016121 B = 0.002354 C = 0.002059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.427521 B =11890.615384 C =13595.922556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.057 3.943
3 Si 0.893 3.107
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.523 4.523
8 H 0.056 0.944
9 C 0.024 3.976
10 C -0.122 4.122
11 C 0.113 3.887
12 N -0.699 5.699
13 C 0.588 3.412
14 O -0.516 6.516
15 C 0.074 3.926
16 N -0.186 5.186
17 N -0.408 5.408
18 C 0.160 3.840
19 C -0.148 4.148
20 C -0.095 4.095
21 C -0.135 4.135
22 C -0.097 4.097
23 C -0.128 4.128
24 C 0.503 3.497
25 O -0.472 6.472
26 C -0.150 4.150
27 H 0.261 0.739
28 H 0.020 0.980
29 H 0.020 0.980
30 H 0.057 0.943
31 H 0.057 0.943
32 H 0.073 0.927
33 H 0.073 0.927
34 H 0.408 0.592
35 H 0.151 0.849
36 H 0.130 0.870
37 H 0.126 0.874
38 H 0.131 0.869
39 H 0.138 0.862
40 H 0.151 0.849
41 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.893 -22.415 0.010 26.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.144 4.144
3 Si 0.721 3.279
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.562 4.562
8 H 0.074 0.926
9 C -0.014 4.014
10 C -0.160 4.160
11 C -0.008 4.008
12 N -0.349 5.349
13 C 0.368 3.632
14 O -0.390 6.390
15 C -0.120 4.120
16 N 0.001 4.999
17 N -0.220 5.220
18 C 0.069 3.931
19 C -0.169 4.169
20 C -0.114 4.114
21 C -0.154 4.154
22 C -0.116 4.116
23 C -0.148 4.148
24 C 0.292 3.708
25 O -0.343 6.343
26 C -0.192 4.192
27 H 0.071 0.929
28 H 0.038 0.962
29 H 0.038 0.962
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.091 0.909
33 H 0.091 0.909
34 H 0.243 0.757
35 H 0.169 0.831
36 H 0.148 0.852
37 H 0.144 0.856
38 H 0.149 0.851
39 H 0.156 0.844
40 H 0.169 0.831
41 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 13.807 -22.550 0.016 26.442
hybrid contribution 0.393 0.564 -0.012 0.688
sum 14.200 -21.986 0.004 26.173
Atomic orbital electron populations
1.69958 1.06055 1.26756 1.50457 1.25024 0.94863 0.99329 0.95223
0.86580 0.79810 0.83400 0.78121 1.20645 1.21201 1.19878 1.21184
0.93015 0.90882 1.51077 0.92606 1.19031 0.93800 0.90765 0.97758
1.21926 0.99889 0.92990 1.01243 1.21864 0.91674 0.84553 1.02746
1.46176 1.11954 1.05110 1.71681 1.16505 0.86329 0.81550 0.78769
1.90910 1.14328 1.84081 1.49644 1.25257 0.91382 0.96657 0.98702
1.75649 1.08874 1.04753 1.10583 1.47184 1.05402 1.03237 1.66165
1.17683 0.78589 0.94936 1.01901 1.21469 0.96622 0.95848 1.02968
1.21020 0.92259 0.99332 0.98788 1.21246 1.00125 0.92604 1.01403
1.21068 0.94273 0.97597 0.98626 1.20954 0.93098 0.98289 1.02434
1.21494 0.87396 0.86313 0.75607 1.90710 1.83323 1.13030 1.47254
1.21897 0.97154 0.90769 1.09350 0.92886 0.96179 0.96163 0.92461
0.92457 0.90915 0.90906 0.75690 0.83121 0.85226 0.85625 0.85096
0.84404 0.83123 0.83131
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16
2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16
4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16
6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
7 C -0.52 -14.12 9.11 -34.45 -0.31 -14.43 16
8 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16
9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16
10 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16
11 C 0.11 1.75 5.67 -4.04 -0.02 1.73 16
12 N -0.70 -8.80 5.55 -61.62 -0.34 -9.15 16
13 C 0.59 7.39 7.79 -12.84 -0.10 7.29 16
14 O -0.52 -7.98 16.98 5.23 0.09 -7.89 16
15 C 0.07 0.76 7.39 -79.68 -0.59 0.17 16
16 N -0.19 -1.97 10.96 35.13 0.39 -1.59 16
17 N -0.41 -4.53 3.73 -9.45 -0.04 -4.56 16
18 C 0.16 1.75 6.66 -83.64 -0.56 1.20 16
19 C -0.15 -1.52 9.34 -39.39 -0.37 -1.89 16
20 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16
21 C -0.14 -0.99 10.04 -39.54 -0.40 -1.39 16
22 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16
23 C -0.13 -1.23 9.61 -39.39 -0.38 -1.61 16
24 C 0.50 5.42 8.28 -10.35 -0.09 5.34 16
25 O -0.47 -5.93 15.09 5.59 0.08 -5.85 16
26 C -0.15 -1.27 6.75 -28.22 -0.19 -1.46 16
27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
34 H 0.41 4.41 8.17 -40.82 -0.33 4.08 16
35 H 0.15 1.66 5.34 -52.49 -0.28 1.38 16
36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16
37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16
38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16
39 H 0.14 1.27 7.60 -52.49 -0.40 0.87 16
40 H 0.15 1.02 8.14 -51.93 -0.42 0.60 16
41 H 0.15 1.02 8.14 -51.93 -0.42 0.60 16
LS Contribution 359.36 15.07 5.42 5.42
Total: -1.00 -31.93 359.36 -8.07 -40.00
By element:
Atomic # 1 Polarization: 6.02 SS G_CDS: -5.20 Total: 0.81 kcal
Atomic # 6 Polarization: -3.63 SS G_CDS: -4.17 Total: -7.80 kcal
Atomic # 7 Polarization: -41.43 SS G_CDS: 0.74 Total: -40.69 kcal
Atomic # 8 Polarization: -13.91 SS G_CDS: 0.17 Total: -13.74 kcal
Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -31.93 -8.07 -40.00 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001147889671.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.971 kcal
(2) G-P(sol) polarization free energy of solvation -31.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.037 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds