Wall clock time and date at job start Tue Mar 31 2020 10:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48504 * 109.47172 * 240.00063 * 3 2 1 5 5 H 1.48503 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47138 * 120.00081 * 3 2 1 7 7 C 1.40057 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00440 * 186.23115 * 7 2 1 9 9 C 1.41281 * 119.99735 * 5.96346 * 7 2 1 10 10 C 1.40714 * 120.15523 * 173.75572 * 9 7 2 11 11 N 1.31909 * 119.92518 * 179.70321 * 10 9 7 12 12 C 1.32153 * 120.27434 * 0.59872 * 11 10 9 13 13 C 1.39924 * 120.31658 * 359.67922 * 12 11 10 14 14 N 1.38829 * 119.96335 * 180.02562 * 13 12 11 15 15 C 1.46493 * 120.00441 * 359.97080 * 14 13 12 16 16 C 1.53001 * 109.47613 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.46185 * 60.00566 * 16 15 14 18 18 O 1.42899 * 109.47185 * 300.00782 * 16 15 14 19 19 C 1.53004 * 109.47329 * 180.02562 * 16 15 14 20 20 O 1.42895 * 109.46807 * 185.00490 * 19 16 15 21 21 C 1.35906 * 116.99789 * 180.02562 * 20 19 16 22 22 C 1.38722 * 120.05333 * 359.72201 * 21 20 19 23 23 C 1.38148 * 119.94474 * 179.74353 * 22 21 20 24 24 C 1.38267 * 120.05170 * 0.51097 * 23 22 21 25 25 C 1.38266 * 120.11273 * 359.76629 * 24 23 22 26 26 C 1.38145 * 120.05416 * 359.97438 * 25 24 23 27 27 N 1.32262 * 120.06384 * 359.97438 * 13 12 11 28 28 H 0.96998 * 120.00338 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.04118 * 0.02562 * 10 9 7 30 30 H 1.07991 * 119.84189 * 179.70279 * 12 11 10 31 31 H 0.97000 * 119.99793 * 179.97438 * 14 13 12 32 32 H 1.08998 * 109.47472 * 300.01055 * 15 14 13 33 33 H 1.09010 * 109.47062 * 60.00646 * 15 14 13 34 34 H 0.96696 * 113.99831 * 299.99593 * 18 16 15 35 35 H 1.08998 * 109.46858 * 305.00216 * 19 16 15 36 36 H 1.08995 * 109.46674 * 65.00085 * 19 16 15 37 37 H 1.08004 * 120.03128 * 359.97438 * 22 21 20 38 38 H 1.07995 * 119.97954 * 180.27493 * 23 22 21 39 39 H 1.08006 * 119.94781 * 179.74396 * 24 23 22 40 40 H 1.08006 * 119.97280 * 179.97438 * 25 24 23 41 41 H 1.08006 * 120.02678 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 0.1021 9 6 1.3069 -2.4332 -0.1260 10 6 2.0128 -3.6433 -0.2579 11 7 1.3541 -4.7806 -0.3699 12 6 0.0326 -4.7878 -0.3707 13 6 -0.6803 -3.5902 -0.2461 14 7 -2.0685 -3.6064 -0.2473 15 6 -2.7863 -4.8766 -0.3796 16 6 -4.2937 -4.6159 -0.3525 17 1 -4.5635 -3.9584 -1.1790 18 8 -4.6476 -3.9954 0.8851 19 6 -5.0433 -5.9427 -0.4901 20 8 -6.4466 -5.6895 -0.5819 21 6 -7.2614 -6.7698 -0.7090 22 6 -6.7208 -8.0467 -0.7503 23 6 -7.5514 -9.1436 -0.8742 24 6 -8.9198 -8.9688 -0.9676 25 6 -9.4607 -7.6968 -0.9324 26 6 -8.6346 -6.5971 -0.8033 27 7 -0.0330 -2.4431 -0.1261 28 1 -0.4850 0.8400 -0.0004 29 1 3.0929 -3.6415 -0.2622 30 1 -0.4997 -5.7224 -0.4676 31 1 -2.5633 -2.7765 -0.1605 32 1 -2.5166 -5.3497 -1.3237 33 1 -2.5161 -5.5344 0.4466 34 1 -4.4357 -4.5254 1.6656 35 1 -4.7074 -6.4581 -1.3898 36 1 -4.8426 -6.5653 0.3817 37 1 -5.6516 -8.1835 -0.6819 38 1 -7.1315 -10.1381 -0.9020 39 1 -9.5674 -9.8273 -1.0686 40 1 -10.5299 -7.5628 -1.0060 41 1 -9.0576 -5.6036 -0.7763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155938961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:12 Heat of formation + Delta-G solvation = -14.945364 kcal Electronic energy + Delta-G solvation = -24472.817367 eV Core-core repulsion = 20739.020702 eV Total energy + Delta-G solvation = -3733.796665 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42304 -39.02295 -38.26751 -37.01916 -34.78982 -33.86110 -31.86599 -31.40623 -30.85693 -29.91619 -28.71395 -25.89247 -25.58038 -23.14272 -22.54788 -22.29246 -21.50369 -20.97953 -18.55301 -17.62199 -17.01085 -16.78696 -16.61806 -16.18879 -15.50315 -15.30716 -15.09816 -14.98192 -14.80471 -14.62571 -13.78879 -13.69199 -13.63855 -13.45954 -13.10835 -12.90302 -12.74750 -12.32802 -11.89030 -11.53609 -11.47589 -11.33833 -11.27971 -11.25780 -10.86823 -10.68910 -10.45056 -10.21704 -9.91529 -9.65074 -9.40283 -9.30743 -8.48076 -8.37560 -7.40256 -6.75904 -6.45536 -4.67435 1.03736 1.16212 2.70083 2.76392 3.03968 3.05780 3.11367 3.26335 3.50219 3.87045 3.93640 4.25820 4.48416 4.57942 4.65374 4.70781 4.75848 4.78844 4.84551 4.99806 5.08750 5.19841 5.26016 5.37665 5.64476 5.70490 5.83889 5.95871 6.01956 6.04433 6.10929 6.23419 6.29432 6.47280 6.49996 6.74603 7.02764 7.10438 7.14761 7.51602 7.57232 7.92755 8.02179 8.42399 8.54406 8.83403 9.39263 9.98862 10.18245 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027055 B = 0.002232 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.686738 B =12542.300420 C =13449.936099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.415 4.415 8 H 0.090 0.910 9 C 0.245 3.755 10 C -0.106 4.106 11 N -0.408 5.408 12 C -0.174 4.174 13 C 0.373 3.627 14 N -0.725 5.725 15 C 0.113 3.887 16 C 0.102 3.898 17 H 0.115 0.885 18 O -0.545 6.545 19 C 0.031 3.969 20 O -0.303 6.303 21 C 0.132 3.868 22 C -0.211 4.211 23 C -0.080 4.080 24 C -0.163 4.163 25 C -0.082 4.082 26 C -0.153 4.153 27 N -0.507 5.507 28 H 0.275 0.725 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.402 0.598 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.375 0.625 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.238 -11.725 -1.021 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.448 4.448 8 H 0.108 0.892 9 C 0.117 3.883 10 C -0.277 4.277 11 N -0.119 5.119 12 C -0.335 4.335 13 C 0.130 3.870 14 N -0.364 5.364 15 C -0.013 4.013 16 C 0.042 3.958 17 H 0.133 0.867 18 O -0.349 6.349 19 C -0.045 4.045 20 O -0.216 6.216 21 C 0.086 3.914 22 C -0.230 4.230 23 C -0.098 4.098 24 C -0.181 4.181 25 C -0.100 4.100 26 C -0.172 4.172 27 N -0.234 5.234 28 H 0.087 0.913 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.238 0.762 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.223 0.777 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.731 -11.134 -1.424 20.148 hybrid contribution 0.498 0.274 0.320 0.652 sum -16.234 -10.859 -1.104 19.562 Atomic orbital electron populations 1.70090 1.07348 1.28244 1.27136 1.26143 0.94958 1.01351 0.93552 0.86318 0.80068 0.80027 0.80054 1.18764 1.20188 1.18769 1.19603 0.94897 0.89244 1.41009 0.89162 1.19096 0.87674 0.93245 0.88315 1.22911 0.98972 0.89280 1.16530 1.67489 1.08213 1.30217 1.05992 1.21865 0.90803 0.95623 1.25206 1.19472 0.84830 0.92066 0.90639 1.43856 1.02583 1.07300 1.82628 1.21587 0.89821 0.88169 1.01765 1.22123 0.91761 0.92833 0.89080 0.86719 1.86669 1.85422 1.47942 1.14892 1.23527 0.79366 0.99187 1.02464 1.86147 1.17414 1.30529 1.87472 1.19104 0.90780 0.86114 0.95374 1.21320 1.00708 0.92158 1.08814 1.20970 0.93507 0.98290 0.97082 1.21069 0.95216 0.97310 1.04548 1.20982 0.99573 0.91935 0.97491 1.20491 0.90351 1.00164 1.06198 1.69027 1.08324 1.22311 1.23692 0.91328 0.85243 0.86492 0.76172 0.91629 0.92245 0.77721 0.90644 0.91245 0.85381 0.85811 0.86001 0.85424 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.36 11.51 55.55 0.64 -17.72 16 2 C 0.07 1.65 5.49 -17.34 -0.10 1.56 16 3 Si 0.91 18.07 29.56 -169.99 -5.03 13.05 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.41 -10.83 9.15 -37.74 -0.35 -11.17 16 8 H 0.09 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.24 6.71 6.54 -84.83 -0.55 6.16 16 10 C -0.11 -2.75 10.97 -16.58 -0.18 -2.93 16 11 N -0.41 -10.33 10.47 -12.11 -0.13 -10.46 16 12 C -0.17 -4.09 10.50 -16.78 -0.18 -4.27 16 13 C 0.37 8.96 7.66 -155.01 -1.19 7.77 16 14 N -0.73 -13.82 5.61 -60.28 -0.34 -14.16 16 15 C 0.11 1.54 4.56 -4.04 -0.02 1.52 16 16 C 0.10 1.18 3.34 -26.73 -0.09 1.09 16 17 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 18 O -0.54 -7.05 13.05 -40.11 -0.52 -7.58 16 19 C 0.03 0.30 4.37 37.16 0.16 0.46 16 20 O -0.30 -3.56 10.10 -24.32 -0.25 -3.81 16 21 C 0.13 1.43 6.69 -39.22 -0.26 1.17 16 22 C -0.21 -1.98 9.04 -39.44 -0.36 -2.34 16 23 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 24 C -0.16 -1.28 10.04 -39.56 -0.40 -1.67 16 25 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 26 C -0.15 -1.51 9.99 -39.43 -0.39 -1.91 16 27 N -0.51 -13.83 8.10 -10.14 -0.08 -13.91 16 28 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 29 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 30 H 0.12 2.39 6.70 -52.49 -0.35 2.03 16 31 H 0.40 7.95 8.47 -40.82 -0.35 7.61 16 32 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 33 H 0.06 0.76 7.93 -51.92 -0.41 0.35 16 34 H 0.38 3.68 9.04 45.56 0.41 4.09 16 35 H 0.08 0.62 7.65 -51.93 -0.40 0.23 16 36 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 37 H 0.13 1.02 6.30 -52.48 -0.33 0.68 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 41 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -32.24 354.42 -9.37 -41.62 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -4.32 Total: 14.31 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -4.69 Total: -6.69 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.09 Total: -56.24 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.77 Total: -11.39 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.24 -9.37 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155938961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.671 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds