Wall clock time and date at job start Tue Mar 31 2020 10:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48504 * 109.47172 * 240.00063 * 3 2 1 5 5 H 1.48503 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47138 * 120.00081 * 3 2 1 7 7 C 1.40057 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00440 * 186.23115 * 7 2 1 9 9 C 1.41281 * 119.99735 * 5.96346 * 7 2 1 10 10 C 1.40714 * 120.15523 * 173.75572 * 9 7 2 11 11 N 1.31909 * 119.92518 * 179.70321 * 10 9 7 12 12 C 1.32153 * 120.27434 * 0.59872 * 11 10 9 13 13 C 1.39924 * 120.31658 * 359.67922 * 12 11 10 14 14 N 1.38829 * 119.96335 * 180.02562 * 13 12 11 15 15 C 1.46493 * 120.00441 * 359.97080 * 14 13 12 16 16 C 1.53001 * 109.47613 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.46185 * 60.00566 * 16 15 14 18 18 O 1.42899 * 109.47185 * 300.00782 * 16 15 14 19 19 C 1.53004 * 109.47329 * 180.02562 * 16 15 14 20 20 O 1.42895 * 109.46807 * 185.00490 * 19 16 15 21 21 C 1.35906 * 116.99789 * 180.02562 * 20 19 16 22 22 C 1.38722 * 120.05333 * 359.72201 * 21 20 19 23 23 C 1.38148 * 119.94474 * 179.74353 * 22 21 20 24 24 C 1.38267 * 120.05170 * 0.51097 * 23 22 21 25 25 C 1.38266 * 120.11273 * 359.76629 * 24 23 22 26 26 C 1.38145 * 120.05416 * 359.97438 * 25 24 23 27 27 N 1.32262 * 120.06384 * 359.97438 * 13 12 11 28 28 H 0.96998 * 120.00338 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.04118 * 0.02562 * 10 9 7 30 30 H 1.07991 * 119.84189 * 179.70279 * 12 11 10 31 31 H 0.97000 * 119.99793 * 179.97438 * 14 13 12 32 32 H 1.08998 * 109.47472 * 300.01055 * 15 14 13 33 33 H 1.09010 * 109.47062 * 60.00646 * 15 14 13 34 34 H 0.96696 * 113.99831 * 299.99593 * 18 16 15 35 35 H 1.08998 * 109.46858 * 305.00216 * 19 16 15 36 36 H 1.08995 * 109.46674 * 65.00085 * 19 16 15 37 37 H 1.08004 * 120.03128 * 359.97438 * 22 21 20 38 38 H 1.07995 * 119.97954 * 180.27493 * 23 22 21 39 39 H 1.08006 * 119.94781 * 179.74396 * 24 23 22 40 40 H 1.08006 * 119.97280 * 179.97438 * 25 24 23 41 41 H 1.08006 * 120.02678 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 0.1021 9 6 1.3069 -2.4332 -0.1260 10 6 2.0128 -3.6433 -0.2579 11 7 1.3541 -4.7806 -0.3699 12 6 0.0326 -4.7878 -0.3707 13 6 -0.6803 -3.5902 -0.2461 14 7 -2.0685 -3.6064 -0.2473 15 6 -2.7863 -4.8766 -0.3796 16 6 -4.2937 -4.6159 -0.3525 17 1 -4.5635 -3.9584 -1.1790 18 8 -4.6476 -3.9954 0.8851 19 6 -5.0433 -5.9427 -0.4901 20 8 -6.4466 -5.6895 -0.5819 21 6 -7.2614 -6.7698 -0.7090 22 6 -6.7208 -8.0467 -0.7503 23 6 -7.5514 -9.1436 -0.8742 24 6 -8.9198 -8.9688 -0.9676 25 6 -9.4607 -7.6968 -0.9324 26 6 -8.6346 -6.5971 -0.8033 27 7 -0.0330 -2.4431 -0.1261 28 1 -0.4850 0.8400 -0.0004 29 1 3.0929 -3.6415 -0.2622 30 1 -0.4997 -5.7224 -0.4676 31 1 -2.5633 -2.7765 -0.1605 32 1 -2.5166 -5.3497 -1.3237 33 1 -2.5161 -5.5344 0.4466 34 1 -4.4357 -4.5254 1.6656 35 1 -4.7074 -6.4581 -1.3898 36 1 -4.8426 -6.5653 0.3817 37 1 -5.6516 -8.1835 -0.6819 38 1 -7.1315 -10.1381 -0.9020 39 1 -9.5674 -9.8273 -1.0686 40 1 -10.5299 -7.5628 -1.0060 41 1 -9.0576 -5.6036 -0.7763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155938961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:12 Heat of formation + Delta-G solvation = -37.611941 kcal Electronic energy + Delta-G solvation = -24473.800263 eV Core-core repulsion = 20739.020702 eV Total energy + Delta-G solvation = -3734.779561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17645 -40.78964 -39.23416 -37.90969 -36.30294 -35.69568 -33.57789 -32.33994 -31.81793 -30.99562 -30.02183 -27.76817 -26.71155 -24.40068 -23.84913 -23.22414 -22.63360 -22.41615 -19.53441 -19.16315 -18.41300 -17.93991 -17.64079 -17.10903 -16.83075 -16.68490 -16.60524 -16.20107 -16.04233 -15.45417 -15.12094 -15.06568 -14.89587 -14.43209 -14.29420 -13.91856 -13.78150 -13.38788 -13.27016 -13.22740 -12.95060 -12.54171 -12.47420 -12.14961 -12.06137 -11.98118 -11.74674 -11.67779 -11.38858 -11.35142 -11.18701 -10.23512 -9.94752 -9.31706 -9.17211 -8.49067 -8.32339 -6.63702 0.39861 0.49682 0.84933 1.26215 1.42153 1.54774 1.58334 1.90726 2.21144 2.62272 2.83832 2.85501 3.37248 3.65751 3.76305 3.86585 3.92269 3.94606 4.04320 4.21123 4.25065 4.31258 4.31653 4.43836 4.49696 4.51364 4.57138 4.70626 4.75502 4.92367 4.96304 5.09489 5.15358 5.21594 5.36551 5.49033 5.61239 5.71774 5.86544 6.09509 6.21985 6.43389 6.63410 6.66366 6.73281 6.98165 7.46912 8.08940 8.35208 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027055 B = 0.002232 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.686738 B =12542.300420 C =13449.936099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.022 3.978 3 Si 0.993 3.007 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.442 4.442 8 H 0.102 0.898 9 C 0.215 3.785 10 C -0.134 4.134 11 N -0.416 5.416 12 C -0.174 4.174 13 C 0.365 3.635 14 N -0.718 5.718 15 C 0.111 3.889 16 C 0.113 3.887 17 H 0.103 0.897 18 O -0.565 6.565 19 C 0.036 3.964 20 O -0.325 6.325 21 C 0.107 3.893 22 C -0.220 4.220 23 C -0.087 4.087 24 C -0.165 4.165 25 C -0.085 4.085 26 C -0.174 4.174 27 N -0.542 5.542 28 H 0.282 0.718 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.397 0.603 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.388 0.612 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.025 -12.828 -1.119 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.201 4.201 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.475 4.475 8 H 0.120 0.880 9 C 0.087 3.913 10 C -0.303 4.303 11 N -0.128 5.128 12 C -0.336 4.336 13 C 0.120 3.880 14 N -0.354 5.354 15 C -0.014 4.014 16 C 0.053 3.947 17 H 0.121 0.879 18 O -0.372 6.372 19 C -0.040 4.040 20 O -0.239 6.239 21 C 0.062 3.938 22 C -0.238 4.238 23 C -0.105 4.105 24 C -0.183 4.183 25 C -0.102 4.102 26 C -0.192 4.192 27 N -0.269 5.269 28 H 0.092 0.908 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.232 0.768 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.238 0.762 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.535 -12.283 -1.516 21.463 hybrid contribution 0.566 0.480 0.349 0.820 sum -16.968 -11.803 -1.168 20.703 Atomic orbital electron populations 1.70186 1.09078 1.29606 1.27586 1.27114 0.95776 1.04838 0.92420 0.85096 0.78543 0.74791 0.80322 1.18151 1.19440 1.17903 1.20032 0.95721 0.89947 1.41754 0.88047 1.19536 0.88355 0.94369 0.89056 1.23049 0.99654 0.89249 1.18306 1.67508 1.09119 1.30028 1.06095 1.22382 0.90500 0.96821 1.23945 1.19832 0.86689 0.91641 0.89864 1.44046 1.00961 1.09189 1.81211 1.21865 0.90543 0.85990 1.03023 1.21938 0.90607 0.93764 0.88343 0.87926 1.86638 1.85577 1.49107 1.15882 1.23469 0.78583 0.97872 1.04074 1.86087 1.18220 1.31591 1.88027 1.19351 0.91070 0.86474 0.96877 1.21532 1.01634 0.91884 1.08793 1.21329 0.93787 0.99031 0.96324 1.21446 0.95583 0.97957 1.03339 1.21300 1.00636 0.91668 0.96631 1.20711 0.90576 1.00854 1.07108 1.69021 1.08659 1.24039 1.25225 0.90750 0.84083 0.83108 0.76796 0.90295 0.90557 0.76249 0.89087 0.89430 0.84170 0.83595 0.83572 0.83198 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.26 11.51 21.84 0.25 -39.01 16 2 C 0.02 1.09 5.49 85.30 0.47 1.56 16 3 Si 0.99 36.92 29.56 68.60 2.03 38.95 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.44 -23.53 9.15 23.46 0.21 -23.32 16 8 H 0.10 4.92 7.85 -2.91 -0.02 4.90 16 9 C 0.21 12.07 6.54 40.17 0.26 12.33 16 10 C -0.13 -7.04 10.97 85.29 0.94 -6.11 16 11 N -0.42 -21.03 10.47 -192.24 -2.01 -23.05 16 12 C -0.17 -8.05 10.50 85.05 0.89 -7.15 16 13 C 0.36 17.54 7.66 133.36 1.02 18.56 16 14 N -0.72 -27.09 5.61 -344.64 -1.93 -29.02 16 15 C 0.11 2.81 4.56 86.38 0.39 3.21 16 16 C 0.11 2.51 3.34 30.60 0.10 2.61 16 17 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 18 O -0.56 -14.31 13.05 -144.32 -1.88 -16.19 16 19 C 0.04 0.63 4.37 71.98 0.31 0.94 16 20 O -0.33 -7.49 10.10 -87.83 -0.89 -8.38 16 21 C 0.11 2.25 6.69 22.50 0.15 2.40 16 22 C -0.22 -3.75 9.04 22.36 0.20 -3.54 16 23 C -0.09 -1.23 10.04 22.26 0.22 -1.00 16 24 C -0.17 -2.18 10.04 22.28 0.22 -1.96 16 25 C -0.08 -1.24 10.04 22.25 0.22 -1.02 16 26 C -0.17 -3.35 9.99 22.37 0.22 -3.13 16 27 N -0.54 -30.19 8.10 -186.00 -1.51 -31.69 16 28 H 0.28 13.47 8.29 -92.71 -0.77 12.70 16 29 H 0.14 6.79 8.06 -2.91 -0.02 6.76 16 30 H 0.15 5.77 6.70 -2.92 -0.02 5.75 16 31 H 0.40 15.86 8.47 -92.71 -0.79 15.08 16 32 H 0.08 1.86 7.93 -2.39 -0.02 1.84 16 33 H 0.08 1.74 7.93 -2.38 -0.02 1.72 16 34 H 0.39 7.22 9.04 -74.06 -0.67 6.55 16 35 H 0.09 1.31 7.65 -2.39 -0.02 1.29 16 36 H 0.09 1.21 7.67 -2.39 -0.02 1.19 16 37 H 0.14 1.90 6.30 -2.91 -0.02 1.88 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -71.01 354.42 -0.47 -71.48 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.38 Total: 42.51 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.85 Total: -5.60 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -5.20 Total: -122.77 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -2.77 Total: -24.56 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -71.01 -0.47 -71.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155938961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.868 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds