Wall clock time and date at job start Tue Mar 31 2020 10:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86801 * 120.00147 * 2 1 4 4 H 1.48506 * 109.47035 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47151 * 119.99759 * 3 2 1 6 6 H 1.48500 * 109.47499 * 240.00325 * 3 2 1 7 7 C 1.40058 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00215 * 173.73400 * 7 2 1 9 9 C 1.41271 * 120.00062 * 353.72608 * 7 2 1 10 10 C 1.40716 * 120.16048 * 185.99718 * 9 7 2 11 11 N 1.31901 * 119.93119 * 179.68058 * 10 9 7 12 12 C 1.32159 * 120.27245 * 0.61642 * 11 10 9 13 13 C 1.39921 * 120.31825 * 359.66168 * 12 11 10 14 14 N 1.38832 * 119.97214 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99367 * 0.02562 * 14 13 12 16 16 C 1.52993 * 109.47559 * 275.00194 * 15 14 13 17 17 C 1.53008 * 109.47229 * 300.00283 * 16 15 14 18 18 C 1.53001 * 109.46876 * 300.00090 * 17 16 15 19 19 C 1.53007 * 109.46613 * 179.97438 * 18 17 16 20 20 F 1.39888 * 109.47148 * 299.99579 * 19 18 17 21 21 F 1.39901 * 109.47120 * 60.00331 * 19 18 17 22 22 F 1.39899 * 109.46326 * 179.97438 * 19 18 17 23 23 C 1.52993 * 109.47265 * 59.99932 * 18 17 16 24 24 C 1.53001 * 109.46722 * 154.99996 * 15 14 13 25 25 N 1.32266 * 120.06069 * 0.02562 * 13 12 11 26 26 H 0.97001 * 120.00122 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.03445 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.84410 * 179.67908 * 12 11 10 29 29 H 0.96998 * 120.00365 * 180.02562 * 14 13 12 30 30 H 1.08998 * 109.47114 * 35.00901 * 15 14 13 31 31 H 1.09003 * 109.47250 * 60.00124 * 16 15 14 32 32 H 1.08999 * 109.47394 * 180.02562 * 16 15 14 33 33 H 1.08995 * 109.46971 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.46778 * 59.99812 * 17 16 15 35 35 H 1.08999 * 109.47190 * 299.99470 * 18 17 16 36 36 H 1.09003 * 109.47250 * 180.02562 * 23 18 17 37 37 H 1.08999 * 109.47394 * 59.99662 * 23 18 17 38 38 H 1.08999 * 109.47190 * 179.97438 * 24 15 14 39 39 H 1.08995 * 109.47449 * 300.00581 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0950 1.6964 1.2125 6 1 3.0950 1.6965 -1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0828 -1.2157 -0.1026 9 6 1.3076 -2.4328 0.1326 10 6 2.0142 -3.6431 0.2592 11 7 1.3561 -4.7788 0.3896 12 6 0.0345 -4.7868 0.3897 13 6 -0.6791 -3.5904 0.2587 14 7 -2.0673 -3.6070 0.2603 15 6 -2.7843 -4.8770 0.3997 16 6 -2.9240 -5.5373 -0.9733 17 6 -3.7047 -4.6107 -1.9078 18 6 -5.0945 -4.3501 -1.3234 19 6 -5.8748 -3.4231 -2.2576 20 9 -5.1899 -2.2106 -2.3902 21 9 -6.0026 -4.0264 -3.5133 22 9 -7.1458 -3.1853 -1.7234 23 6 -4.9547 -3.6898 0.0496 24 6 -4.1741 -4.6164 0.9841 25 7 -0.0323 -2.4435 0.1333 26 1 -0.4850 0.8400 0.0004 27 1 3.0942 -3.6417 0.2544 28 1 -0.4973 -5.7212 0.4918 29 1 -2.5624 -2.7779 0.1691 30 1 -2.2282 -5.5370 1.0654 31 1 -1.9339 -5.7229 -1.3897 32 1 -3.4579 -6.4819 -0.8697 33 1 -3.8038 -5.0810 -2.8861 34 1 -3.1711 -3.6659 -2.0115 35 1 -5.6280 -5.2949 -1.2196 36 1 -5.9448 -3.5046 0.4662 37 1 -4.4212 -2.7450 -0.0541 38 1 -4.7078 -5.5612 1.0874 39 1 -4.0746 -4.1460 1.9623 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156414234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:18 Heat of formation + Delta-G solvation = -143.497862 kcal Electronic energy + Delta-G solvation = -26992.677201 eV Core-core repulsion = 22711.449341 eV Total energy + Delta-G solvation = -4281.227860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.10640 -48.59109 -48.58243 -41.02597 -39.82208 -36.07275 -35.56357 -33.56540 -32.07678 -31.79564 -29.90951 -27.73553 -26.51974 -24.32926 -23.68796 -23.43927 -22.61699 -20.59600 -19.44635 -19.24032 -18.93943 -18.53204 -18.44381 -17.12965 -16.81158 -16.55516 -16.14270 -15.85586 -15.51737 -15.37054 -15.10601 -15.00968 -14.80157 -14.74912 -14.73349 -14.58033 -14.46275 -13.69276 -13.39753 -13.30933 -13.17356 -13.15073 -12.93931 -12.71256 -12.45388 -12.20757 -12.04718 -11.86822 -11.68117 -11.52778 -11.32105 -11.21947 -11.09777 -10.18276 -9.27555 -8.39827 -8.30019 -6.60940 0.89134 1.31123 1.41731 1.53673 1.58334 1.80303 2.21345 2.58724 2.83098 2.85989 3.00040 3.08371 3.71979 3.73281 3.94377 3.98130 4.06675 4.20588 4.23915 4.34635 4.41325 4.46616 4.49409 4.63900 4.70244 4.85328 4.99495 5.00872 5.02526 5.16233 5.17391 5.19054 5.24475 5.35749 5.38373 5.77493 6.12067 6.32845 6.68282 6.76797 7.05893 7.51746 8.14040 8.36782 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.004147 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.538709 B = 6749.601871 C = 7975.783661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.026 3.974 3 Si 0.990 3.010 4 H -0.269 1.269 5 H -0.258 1.258 6 H -0.257 1.257 7 C -0.447 4.447 8 H 0.098 0.902 9 C 0.218 3.782 10 C -0.140 4.140 11 N -0.418 5.418 12 C -0.170 4.170 13 C 0.369 3.631 14 N -0.713 5.713 15 C 0.149 3.851 16 C -0.123 4.123 17 C -0.113 4.113 18 C -0.117 4.117 19 C 0.448 3.552 20 F -0.197 7.197 21 F -0.190 7.190 22 F -0.186 7.186 23 C -0.119 4.119 24 C -0.108 4.108 25 N -0.542 5.542 26 H 0.281 0.719 27 H 0.137 0.863 28 H 0.151 0.849 29 H 0.392 0.608 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 -6.471 -0.951 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.182 1.182 6 H -0.181 1.181 7 C -0.479 4.479 8 H 0.116 0.884 9 C 0.090 3.910 10 C -0.308 4.308 11 N -0.130 5.130 12 C -0.334 4.334 13 C 0.124 3.876 14 N -0.348 5.348 15 C 0.044 3.956 16 C -0.162 4.162 17 C -0.151 4.151 18 C -0.136 4.136 19 C 0.394 3.606 20 F -0.178 7.178 21 F -0.171 7.171 22 F -0.167 7.167 23 C -0.157 4.157 24 C -0.146 4.146 25 N -0.270 5.270 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.168 0.832 29 H 0.228 0.772 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.166 0.834 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.952 -6.561 -0.944 16.355 hybrid contribution 0.296 1.417 -0.465 1.520 sum -14.656 -5.145 -1.409 15.596 Atomic orbital electron populations 1.70182 1.08963 1.29424 1.27814 1.27037 0.95745 1.04591 0.92413 0.85145 0.78610 0.75052 0.80239 1.19380 1.18198 1.18101 1.19992 0.95610 0.90116 1.42171 0.88418 1.19482 0.88513 0.94153 0.88821 1.22980 0.99471 0.89448 1.18938 1.67500 1.09337 1.30000 1.06121 1.22423 0.90320 0.97068 1.23541 1.19867 0.87203 0.91321 0.89241 1.44494 1.00566 1.09343 1.80402 1.21132 0.93169 0.84646 0.96638 1.21940 1.00183 0.99172 0.94871 1.21467 0.93116 1.00816 0.99698 1.22532 0.97130 0.99633 0.94280 1.21033 0.78259 0.80587 0.80713 1.93177 1.79772 1.48704 1.96168 1.93156 1.96046 1.83157 1.44779 1.93160 1.42577 1.95050 1.85909 1.21603 1.02442 0.98895 0.92760 1.21726 0.92894 1.01801 0.98166 1.69049 1.08500 1.24127 1.25300 0.90867 0.84545 0.83209 0.77245 0.89979 0.93096 0.87326 0.90341 0.93589 0.83382 0.88614 0.92871 0.86568 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.98 11.51 21.84 0.25 -38.73 16 2 C 0.03 1.28 5.49 85.30 0.47 1.74 16 3 Si 0.99 37.16 29.56 68.60 2.03 39.19 16 4 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.45 -23.93 9.15 23.46 0.21 -23.72 16 8 H 0.10 4.82 7.86 -2.91 -0.02 4.80 16 9 C 0.22 12.29 6.54 40.17 0.26 12.55 16 10 C -0.14 -7.46 10.97 85.29 0.94 -6.52 16 11 N -0.42 -21.28 10.47 -192.23 -2.01 -23.29 16 12 C -0.17 -7.87 10.01 85.05 0.85 -7.02 16 13 C 0.37 17.41 7.64 133.35 1.02 18.43 16 14 N -0.71 -25.60 4.39 -324.11 -1.42 -27.02 16 15 C 0.15 3.65 2.47 44.99 0.11 3.76 16 16 C -0.12 -2.68 5.53 30.59 0.17 -2.51 16 17 C -0.11 -2.56 4.80 30.60 0.15 -2.41 16 18 C -0.12 -2.06 2.17 -10.79 -0.02 -2.08 16 19 C 0.45 9.88 2.69 71.98 0.19 10.07 16 20 F -0.20 -5.54 16.28 44.97 0.73 -4.81 16 21 F -0.19 -4.36 16.80 44.97 0.76 -3.61 16 22 F -0.19 -3.94 16.80 44.97 0.76 -3.19 16 23 C -0.12 -2.17 4.79 30.59 0.15 -2.02 16 24 C -0.11 -1.82 5.61 30.60 0.17 -1.65 16 25 N -0.54 -29.87 8.10 -186.00 -1.51 -31.37 16 26 H 0.28 13.35 8.29 -92.71 -0.77 12.58 16 27 H 0.14 6.70 8.06 -2.91 -0.02 6.68 16 28 H 0.15 5.82 6.07 -2.91 -0.02 5.81 16 29 H 0.39 14.65 6.99 -92.71 -0.65 14.00 16 30 H 0.08 2.06 6.46 -2.39 -0.02 2.04 16 31 H 0.05 1.41 7.67 -2.39 -0.02 1.39 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.65 7.80 -2.39 -0.02 1.63 16 34 H 0.05 1.40 7.26 -2.39 -0.02 1.38 16 35 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.40 7.80 -2.39 -0.02 1.39 16 37 H 0.05 1.28 6.16 -2.39 -0.01 1.26 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.57 326.08 4.71 -61.86 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.46 Total: 32.34 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 4.67 Total: -1.37 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -4.69 Total: -120.42 kcal Atomic # 9 Polarization: -13.84 SS G_CDS: 2.24 Total: -11.60 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -66.57 4.71 -61.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156414234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.638 kcal (2) G-P(sol) polarization free energy of solvation -66.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds