Wall clock time and date at job start Tue Mar 31 2020 10:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48500 * 109.47389 * 270.00230 * 3 2 1 5 5 H 1.48501 * 109.46721 * 30.00373 * 3 2 1 6 6 H 1.48494 * 109.46973 * 149.99673 * 3 2 1 7 7 C 1.38813 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00167 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46965 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46972 * 180.02562 * 11 10 9 13 13 N 1.46493 * 109.47270 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00550 * 179.97438 * 13 12 11 15 15 O 1.21699 * 119.99529 * 0.02562 * 14 13 12 16 16 C 1.46659 * 120.00493 * 180.02562 * 14 13 12 17 17 C 1.36728 * 125.85943 * 180.02562 * 16 14 13 18 18 C 1.39911 * 106.91420 * 179.76225 * 17 16 14 19 19 C 1.36519 * 107.02374 * 0.40893 * 18 17 16 20 20 C 1.47734 * 125.77140 * 179.84922 * 19 18 17 21 21 C 1.40035 * 120.93625 * 179.72243 * 20 19 18 22 22 C 1.37937 * 118.98697 * 180.25417 * 21 20 19 23 23 N 1.31934 * 120.90743 * 359.42165 * 22 21 20 24 24 C 1.31930 * 122.07498 * 0.59050 * 23 22 21 25 25 C 1.37945 * 120.90854 * 359.70807 * 24 23 22 26 26 O 1.34396 * 108.46153 * 359.58453 * 19 18 17 27 27 H 0.96995 * 120.00213 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00213 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47002 * 60.00305 * 10 9 7 30 30 H 1.08994 * 109.47226 * 300.00342 * 10 9 7 31 31 H 1.09006 * 109.46853 * 60.00593 * 11 10 9 32 32 H 1.08994 * 109.47438 * 300.00224 * 11 10 9 33 33 H 1.08998 * 109.47085 * 60.00262 * 12 11 10 34 34 H 1.09002 * 109.46983 * 300.00020 * 12 11 10 35 35 H 0.97006 * 120.00141 * 0.02562 * 13 12 11 36 36 H 1.07993 * 126.54026 * 0.04318 * 17 16 14 37 37 H 1.08003 * 126.48957 * 180.25537 * 18 17 16 38 38 H 1.08002 * 120.50293 * 359.97089 * 21 20 19 39 39 H 1.08001 * 119.54588 * 179.70053 * 22 21 20 40 40 H 1.07999 * 119.54349 * 179.72096 * 24 23 22 41 41 H 1.07999 * 120.50573 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0641 -4.8197 -0.0008 12 6 1.8291 -6.1447 -0.0013 13 7 0.8772 -7.2583 -0.0011 14 6 1.3265 -8.5290 -0.0020 15 8 2.5230 -8.7513 -0.0025 16 6 0.3735 -9.6437 -0.0023 17 6 0.6953 -10.9726 -0.0027 18 6 -0.5098 -11.6833 0.0026 19 6 -1.5172 -10.7619 -0.0032 20 6 -2.9634 -11.0636 -0.0037 21 6 -3.9134 -10.0348 -0.0042 22 6 -5.2533 -10.3622 0.0007 23 7 -5.6430 -11.6227 -0.0056 24 6 -4.7819 -12.6222 -0.0053 25 6 -3.4227 -12.3865 -0.0043 26 8 -0.9709 -9.5340 -0.0026 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6856 -3.7148 0.8878 30 1 2.6843 -3.7140 -0.8921 31 1 0.4364 -4.7618 -0.8901 32 1 0.4384 -4.7622 0.8899 33 1 2.4565 -6.2024 0.8882 34 1 2.4551 -6.2025 -0.8918 35 1 -0.0765 -7.0811 -0.0010 36 1 1.6900 -11.3933 -0.0022 37 1 -0.6219 -12.7575 0.0077 38 1 -3.6016 -9.0007 -0.0038 39 1 -5.9937 -9.5759 0.0053 40 1 -5.1461 -13.6389 -0.0061 41 1 -2.7235 -13.2096 -0.0037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159868336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:42 Heat of formation + Delta-G solvation = 22.111290 kcal Electronic energy + Delta-G solvation = -23784.558799 eV Core-core repulsion = 20052.369032 eV Total energy + Delta-G solvation = -3732.189767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.16904 -40.46233 -39.62519 -36.18804 -34.58319 -34.19012 -33.34889 -32.09169 -31.75301 -30.18941 -29.12708 -25.86273 -24.61612 -24.16260 -22.92362 -21.96326 -21.83111 -21.26760 -20.47105 -18.90857 -17.72446 -16.97972 -16.89915 -16.63454 -16.30559 -16.10625 -15.63886 -15.13432 -14.66079 -14.46077 -14.35000 -14.22684 -14.20755 -13.54677 -13.50123 -13.31084 -13.19086 -13.01134 -12.54208 -12.14332 -11.72668 -11.10980 -11.04984 -10.96126 -10.86490 -10.67251 -10.47642 -10.42662 -10.07663 -10.05669 -9.73675 -9.73223 -9.30877 -8.90403 -8.68879 -6.96237 -5.79409 -3.08573 -0.08430 0.59415 1.06228 2.01349 2.03739 2.89056 2.91463 3.33324 3.42654 3.47736 3.49496 3.80764 3.94466 4.22099 4.35978 4.41193 4.54455 4.56798 4.58673 4.99232 5.02266 5.04510 5.16693 5.22786 5.23874 5.27186 5.51128 5.54661 5.54843 5.55457 5.84948 5.86306 5.98434 6.08653 6.12668 6.20485 6.27273 6.38986 6.74157 6.78411 7.23141 7.43447 7.68025 7.82981 8.39429 9.50602 10.07249 10.41829 11.43556 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.002041 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.256597 B =13713.376335 C =15384.881524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.139 4.139 12 C 0.121 3.879 13 N -0.713 5.713 14 C 0.598 3.402 15 O -0.517 6.517 16 C -0.055 4.055 17 C -0.123 4.123 18 C -0.184 4.184 19 C 0.043 3.957 20 C 0.025 3.975 21 C -0.154 4.154 22 C 0.107 3.893 23 N -0.482 5.482 24 C 0.105 3.895 25 C -0.151 4.151 26 O -0.153 6.153 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 -29.297 0.030 30.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.002 4.002 13 N -0.363 5.363 14 C 0.383 3.617 15 O -0.395 6.395 16 C -0.108 4.108 17 C -0.143 4.143 18 C -0.204 4.204 19 C -0.008 4.008 20 C 0.017 3.983 21 C -0.173 4.173 22 C -0.049 4.049 23 N -0.191 5.191 24 C -0.052 4.052 25 C -0.171 4.171 26 O -0.049 6.049 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.241 0.759 36 H 0.184 0.816 37 H 0.179 0.821 38 H 0.162 0.838 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.930 -29.180 0.036 30.238 hybrid contribution 0.673 1.112 -0.012 1.300 sum -7.256 -28.067 0.024 28.990 Atomic orbital electron populations 1.69658 1.05138 1.25722 1.57776 1.24765 0.95574 0.97797 1.02959 0.86157 0.78650 0.83653 0.77544 1.21675 1.21741 1.20706 1.19243 0.91117 0.84090 1.42726 0.91057 1.42330 1.05871 0.99965 1.89635 1.20517 0.93210 0.85131 0.98305 1.21963 0.99660 0.93126 1.02935 1.21495 0.91559 0.84206 1.02985 1.46017 1.11431 1.05350 1.73514 1.16521 0.86289 0.81311 0.77535 1.90908 1.13918 1.83967 1.50716 1.22348 0.79988 0.96466 1.11998 1.21904 1.00432 0.91083 1.00878 1.21804 0.90861 1.00755 1.06962 1.20496 0.92460 0.82122 1.05766 1.18076 0.87541 0.94124 0.98559 1.22387 0.94018 1.00537 1.00403 1.22799 0.94191 0.93681 0.94272 1.67672 1.39808 1.00388 1.11268 1.22734 0.88769 0.98876 0.94785 1.22112 0.97780 0.95577 1.01637 1.84063 1.19706 1.30504 1.70622 0.93481 0.78287 0.95962 0.95964 0.91139 0.91139 0.90756 0.90768 0.75896 0.81562 0.82061 0.83787 0.81918 0.81969 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.51 5.60 -59.91 -0.34 -18.85 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 11 C -0.14 -2.06 5.44 -26.73 -0.15 -2.21 16 12 C 0.12 1.58 5.67 -4.04 -0.02 1.55 16 13 N -0.71 -8.39 5.55 -61.62 -0.34 -8.73 16 14 C 0.60 7.73 7.79 -12.86 -0.10 7.63 16 15 O -0.52 -8.17 16.86 5.19 0.09 -8.09 16 16 C -0.05 -0.61 7.12 -36.73 -0.26 -0.87 16 17 C -0.12 -1.15 10.59 -39.50 -0.42 -1.57 16 18 C -0.18 -1.41 10.26 -39.58 -0.41 -1.81 16 19 C 0.04 0.38 7.05 -36.32 -0.26 0.13 16 20 C 0.03 0.19 5.91 -104.67 -0.62 -0.42 16 21 C -0.15 -1.14 9.82 -39.02 -0.38 -1.53 16 22 C 0.11 0.77 11.17 -17.62 -0.20 0.58 16 23 N -0.48 -3.99 10.34 -13.36 -0.14 -4.13 16 24 C 0.10 0.65 11.17 -17.62 -0.20 0.45 16 25 C -0.15 -0.88 9.64 -39.02 -0.38 -1.26 16 26 O -0.15 -1.56 10.23 3.83 0.04 -1.52 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.41 4.03 8.22 -40.82 -0.34 3.69 16 36 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.16 0.72 7.33 -52.48 -0.38 0.34 16 38 H 0.14 0.94 7.99 -52.49 -0.42 0.52 16 39 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.14 0.45 7.11 -52.49 -0.37 0.08 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -34.34 363.41 -8.34 -42.68 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.18 Total: 6.98 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.65 Total: -3.74 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.09 Total: -59.20 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.13 Total: -9.61 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.34 -8.34 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159868336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.793 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds