Wall clock time and date at job start Tue Mar 31 2020 10:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48502 * 109.46705 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47259 * 300.00083 * 3 2 1 6 6 H 1.48497 * 109.47255 * 60.00402 * 3 2 1 7 7 C 1.40021 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00049 * 163.13978 * 7 2 1 9 9 C 1.41551 * 120.00286 * 343.13491 * 7 2 1 10 10 C 1.41186 * 120.99271 * 336.14966 * 9 7 2 11 11 C 1.36553 * 119.15014 * 179.97438 * 10 9 7 12 12 N 1.32101 * 121.26249 * 359.97438 * 11 10 9 13 13 C 1.32522 * 122.21888 * 359.70448 * 12 11 10 14 14 N 1.39080 * 119.65909 * 180.29846 * 13 12 11 15 15 C 1.46499 * 120.00175 * 180.29010 * 14 13 12 16 16 H 1.09000 * 109.52165 * 34.99810 * 15 14 13 17 17 C 1.53115 * 109.52321 * 274.87017 * 15 14 13 18 18 C 1.53043 * 109.27763 * 297.75070 * 17 15 14 19 19 N 1.46842 * 109.52280 * 300.81496 * 18 17 15 20 20 C 1.46850 * 111.19349 * 61.74694 * 19 18 17 21 21 C 1.53123 * 109.52418 * 155.12365 * 15 14 13 22 22 H 1.08996 * 109.50432 * 182.19102 * 21 15 14 23 23 C 1.53000 * 109.50153 * 302.30975 * 21 15 14 24 24 F 1.39901 * 109.47023 * 60.00162 * 23 21 15 25 25 F 1.39903 * 109.46914 * 180.02562 * 23 21 15 26 26 F 1.39893 * 109.47107 * 299.99917 * 23 21 15 27 27 C 1.38752 * 120.68608 * 0.58646 * 13 12 11 28 28 H 0.97006 * 119.99850 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.42776 * 359.95487 * 10 9 7 30 30 H 1.07994 * 119.36710 * 180.02562 * 11 10 9 31 31 H 0.97003 * 119.99871 * 0.28702 * 14 13 12 32 32 H 1.09003 * 109.50177 * 57.68763 * 17 15 14 33 33 H 1.09001 * 109.50711 * 177.80836 * 17 15 14 34 34 H 1.08993 * 109.46445 * 60.83779 * 18 17 15 35 35 H 1.09009 * 109.45799 * 180.81225 * 18 17 15 36 36 H 1.00898 * 111.00134 * 185.83488 * 19 18 17 37 37 H 1.08996 * 109.46305 * 58.27400 * 20 19 18 38 38 H 1.09002 * 109.45920 * 178.25489 * 20 19 18 39 39 H 1.07998 * 120.66101 * 179.70268 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0527 -1.2327 -0.2718 9 6 1.3454 -2.4123 0.3546 10 6 0.1903 -2.3924 1.1661 11 6 -0.4189 -3.5721 1.4853 12 7 0.0519 -4.7267 1.0490 13 6 1.1281 -4.8056 0.2797 14 7 1.5740 -6.0494 -0.1546 15 6 2.7665 -6.1458 -1.0001 16 1 3.4841 -5.3798 -0.7064 17 6 2.3724 -5.9428 -2.4657 18 6 1.4108 -7.0556 -2.8891 19 7 2.0625 -8.3599 -2.7151 20 6 2.4075 -8.5975 -1.3075 21 6 3.3997 -7.5302 -0.8357 22 1 4.3084 -7.5882 -1.4348 23 6 3.7423 -7.7636 0.6371 24 9 2.5747 -7.6911 1.4045 25 9 4.3213 -9.0284 0.7864 26 9 4.6443 -6.7845 1.0669 27 6 1.8181 -3.6607 -0.0923 28 1 -0.4850 0.8401 0.0004 29 1 -0.2064 -1.4561 1.5302 30 1 -1.3029 -3.5610 2.1055 31 1 1.0953 -6.8530 0.1024 32 1 1.8828 -4.9757 -2.5802 33 1 3.2649 -5.9759 -3.0905 34 1 0.5126 -7.0133 -2.2732 35 1 1.1396 -6.9221 -3.9364 36 1 1.4846 -9.1040 -3.0761 37 1 1.5046 -8.5480 -0.6990 38 1 2.8603 -9.5838 -1.2061 39 1 2.6978 -3.7259 -0.7153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160736616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:38 Heat of formation + Delta-G solvation = -134.573511 kcal Electronic energy + Delta-G solvation = -27503.055270 eV Core-core repulsion = 23222.214399 eV Total energy + Delta-G solvation = -4280.840871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.14182 -48.62589 -48.60758 -40.87570 -39.61464 -36.28328 -35.36809 -33.16979 -32.60887 -31.81478 -29.35103 -27.81706 -26.69394 -24.99647 -23.57068 -23.07998 -22.85089 -20.63880 -19.41765 -19.34990 -19.33775 -18.79174 -17.85251 -16.98454 -16.92952 -16.42901 -15.92458 -15.89619 -15.57945 -15.54645 -15.32495 -15.19789 -15.01827 -14.89396 -14.72708 -14.64826 -14.45069 -14.24617 -14.03797 -13.67125 -13.23881 -13.15486 -12.92852 -12.78372 -12.64903 -12.35997 -12.00722 -11.95294 -11.72305 -11.58994 -11.23748 -10.65538 -9.90865 -9.82850 -9.52526 -8.69477 -8.23967 -6.53409 0.98374 1.19704 1.39586 1.54492 1.60177 1.69670 2.19497 2.35497 2.75575 2.82104 2.85451 2.99228 3.33668 3.65391 3.68964 3.83861 4.02062 4.09625 4.13769 4.23488 4.43849 4.56239 4.63457 4.72137 4.85837 4.93322 4.96783 5.05121 5.06651 5.14569 5.24219 5.32998 5.62876 5.85204 5.91430 6.12056 6.36372 6.40775 6.55453 6.87897 6.89747 7.02664 7.89316 8.28164 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.004024 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.011100 B = 6957.206274 C = 7115.164094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.487 4.487 8 H 0.078 0.922 9 C 0.128 3.872 10 C -0.269 4.269 11 C 0.115 3.885 12 N -0.634 5.634 13 C 0.404 3.596 14 N -0.725 5.725 15 C 0.161 3.839 16 H 0.076 0.924 17 C -0.124 4.124 18 C 0.062 3.938 19 N -0.672 5.672 20 C 0.064 3.936 21 C -0.126 4.126 22 H 0.156 0.844 23 C 0.455 3.545 24 F -0.186 7.186 25 F -0.180 7.180 26 F -0.191 7.191 27 C -0.349 4.349 28 H 0.291 0.709 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.395 0.605 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.020 0.980 35 H 0.092 0.908 36 H 0.363 0.637 37 H 0.035 0.965 38 H 0.111 0.889 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 -13.616 -5.411 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.096 0.904 9 C 0.120 3.880 10 C -0.294 4.294 11 C -0.035 4.035 12 N -0.358 5.358 13 C 0.172 3.828 14 N -0.362 5.362 15 C 0.055 3.945 16 H 0.094 0.906 17 C -0.163 4.163 18 C -0.067 4.067 19 N -0.305 5.305 20 C -0.066 4.066 21 C -0.146 4.146 22 H 0.173 0.827 23 C 0.401 3.599 24 F -0.168 7.168 25 F -0.162 7.162 26 F -0.173 7.173 27 C -0.375 4.375 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.232 0.768 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.184 0.816 37 H 0.053 0.947 38 H 0.129 0.871 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.091 -13.979 -5.414 16.181 hybrid contribution -0.546 1.298 0.808 1.623 sum 5.546 -12.681 -4.606 14.587 Atomic orbital electron populations 1.69856 1.09156 1.30824 1.33944 1.26822 0.95475 1.04611 0.90791 0.85124 0.79418 0.75889 0.79079 1.18117 1.18773 1.18832 1.19857 0.98007 0.91947 1.41960 0.90361 1.17999 0.90470 0.92907 0.86662 1.21733 1.02501 0.98161 1.06981 1.21695 0.97660 0.87564 0.96558 1.66865 1.17518 1.29548 1.21884 1.18085 0.89382 0.85802 0.89502 1.44351 1.30853 1.04481 1.56543 1.20844 0.87021 0.94923 0.91711 0.90558 1.21960 1.01282 0.98646 0.94396 1.21833 0.94503 0.88888 1.01472 1.60207 1.49630 1.04520 1.16138 1.21867 0.96669 0.97926 0.90157 1.22830 1.04842 0.97739 0.89225 0.82681 1.20684 0.74133 0.73569 0.91553 1.93168 1.48859 1.95911 1.78848 1.93174 1.84976 1.41282 1.96727 1.93176 1.68875 1.63420 1.91806 1.21225 1.07886 0.92197 1.16220 0.89837 0.87259 0.84222 0.76815 0.92462 0.88422 0.96193 0.89001 0.81611 0.94706 0.87114 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.84 10.92 21.84 0.24 -41.60 16 2 C 0.04 2.00 5.20 85.29 0.44 2.44 16 3 Si 0.98 37.35 29.59 68.60 2.03 39.38 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.49 -26.15 9.12 23.52 0.21 -25.93 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 9 C 0.13 7.02 5.60 -21.12 -0.12 6.91 16 10 C -0.27 -14.55 8.74 22.60 0.20 -14.35 16 11 C 0.11 5.73 11.10 84.26 0.94 6.66 16 12 N -0.63 -31.19 10.37 -194.48 -2.02 -33.20 16 13 C 0.40 18.71 7.63 132.91 1.01 19.72 16 14 N -0.72 -25.72 3.26 -324.33 -1.06 -26.77 16 15 C 0.16 4.59 1.80 45.07 0.08 4.67 16 16 H 0.08 2.47 6.19 -2.39 -0.01 2.46 16 17 C -0.12 -3.15 5.69 30.65 0.17 -2.98 16 18 C 0.06 1.34 6.40 86.33 0.55 1.89 16 19 N -0.67 -11.08 6.85 -513.75 -3.52 -14.60 16 20 C 0.06 1.14 5.44 86.37 0.47 1.61 16 21 C -0.13 -2.69 2.22 -10.69 -0.02 -2.72 16 22 H 0.16 2.59 8.14 -2.39 -0.02 2.57 16 23 C 0.46 11.66 2.68 71.98 0.19 11.85 16 24 F -0.19 -5.72 14.09 44.97 0.63 -5.09 16 25 F -0.18 -4.09 16.83 44.97 0.76 -3.34 16 26 F -0.19 -5.71 16.85 44.97 0.76 -4.96 16 27 C -0.35 -17.37 8.64 23.01 0.20 -17.17 16 28 H 0.29 13.39 8.29 -92.70 -0.77 12.62 16 29 H 0.11 6.07 6.20 -2.91 -0.02 6.06 16 30 H 0.14 6.11 8.06 -2.91 -0.02 6.09 16 31 H 0.39 13.46 5.81 -92.71 -0.54 12.92 16 32 H 0.06 1.83 7.74 -2.39 -0.02 1.81 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.02 0.52 7.69 -2.39 -0.02 0.50 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.36 4.46 8.90 -89.70 -0.80 3.66 16 37 H 0.03 0.72 6.29 -2.39 -0.02 0.70 16 38 H 0.11 1.52 7.84 -2.39 -0.02 1.50 16 39 H 0.11 4.92 6.15 -2.91 -0.02 4.90 16 Total: -1.00 -62.54 321.83 1.95 -60.59 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.21 Total: 36.99 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 4.33 Total: -7.41 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -6.35 Total: -116.17 kcal Atomic # 9 Polarization: -15.53 SS G_CDS: 2.15 Total: -13.38 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -62.54 1.95 -60.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160736616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.984 kcal (2) G-P(sol) polarization free energy of solvation -62.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds