Wall clock time and date at job start Tue Mar 31 2020 10:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86795 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27347 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27549 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27507 * 3 2 1 7 7 C 1.40055 * 119.99660 * 180.27458 * 2 1 3 8 8 H 1.07999 * 119.99987 * 179.72757 * 7 2 1 9 9 C 1.41139 * 119.99688 * 359.72578 * 7 2 1 10 10 N 1.33599 * 119.17546 * 359.73139 * 9 7 2 11 11 C 1.31665 * 120.79088 * 179.71594 * 10 9 7 12 12 C 1.40082 * 119.13665 * 0.54691 * 11 10 9 13 13 N 1.38803 * 120.75648 * 179.75202 * 12 11 10 14 14 C 1.46504 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.46909 * 180.02562 * 14 13 12 16 16 H 1.09007 * 109.46952 * 59.99792 * 15 14 13 17 17 O 1.42901 * 109.47204 * 299.99815 * 15 14 13 18 18 C 1.53000 * 109.46969 * 179.97438 * 15 14 13 19 19 O 1.42900 * 109.46971 * 185.00048 * 18 15 14 20 20 C 1.35899 * 116.99857 * 180.02562 * 19 18 15 21 21 C 1.38730 * 120.05740 * 359.72659 * 20 19 18 22 22 C 1.38147 * 119.94716 * 179.74492 * 21 20 19 23 23 C 1.38266 * 120.05104 * 0.50659 * 22 21 20 24 24 C 1.38264 * 120.11382 * 359.76700 * 23 22 21 25 25 C 1.38139 * 120.05678 * 359.97438 * 24 23 22 26 26 C 1.40081 * 118.48617 * 359.72542 * 12 11 10 27 27 N 1.31660 * 119.13506 * 0.02562 * 26 12 11 28 28 H 0.97000 * 119.99310 * 359.72764 * 1 2 3 29 29 H 1.08006 * 120.42939 * 180.25828 * 11 10 9 30 30 H 0.97001 * 120.00288 * 179.97438 * 13 12 11 31 31 H 1.08997 * 109.47021 * 299.99801 * 14 13 12 32 32 H 1.08998 * 109.47641 * 59.99861 * 14 13 12 33 33 H 0.96698 * 113.99829 * 300.00012 * 17 15 14 34 34 H 1.09002 * 109.47108 * 305.00108 * 18 15 14 35 35 H 1.09003 * 109.47082 * 65.00312 * 18 15 14 36 36 H 1.07997 * 120.02791 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.97765 * 180.27287 * 22 21 20 38 38 H 1.07999 * 119.94654 * 179.74451 * 23 22 21 39 39 H 1.08004 * 119.97129 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.03225 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.42903 * 179.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4830 2.0496 -1.4001 5 1 1.4418 2.6509 0.7058 6 1 3.5418 1.4383 0.6942 7 6 2.0075 -1.2129 -0.0058 8 1 3.0874 -1.2130 -0.0103 9 6 1.3016 -2.4352 -0.0058 10 7 -0.0342 -2.4158 0.0052 11 6 -0.7245 -3.5370 0.0000 12 6 -0.0403 -4.7593 -0.0058 13 7 -0.7344 -5.9613 -0.0063 14 6 -2.1994 -5.9612 -0.0001 15 6 -2.7095 -7.4037 -0.0014 16 1 -2.3424 -7.9197 0.8859 17 8 -2.2381 -8.0746 -1.1718 18 6 -4.2395 -7.4036 0.0056 19 8 -4.7153 -8.7460 0.1219 20 6 -6.0625 -8.9234 0.1426 21 6 -6.9090 -7.8275 0.0586 22 6 -8.2782 -8.0109 0.0745 23 6 -8.8050 -9.2845 0.1847 24 6 -7.9634 -10.3779 0.2743 25 6 -6.5937 -10.2003 0.2534 26 6 1.3604 -4.7408 -0.0116 27 7 1.9862 -3.5825 -0.0110 28 1 -0.4849 0.8401 0.0040 29 1 -1.8044 -3.5145 0.0048 30 1 -0.2495 -6.8014 -0.0106 31 1 -2.5589 -5.4499 0.8928 32 1 -2.5665 -5.4449 -0.8871 33 1 -2.5269 -7.6691 -2.0008 34 1 -4.5989 -6.8162 0.8506 35 1 -4.6070 -6.9670 -0.9231 36 1 -6.4980 -6.8322 -0.0230 37 1 -8.9377 -7.1585 0.0047 38 1 -9.8756 -9.4256 0.2011 39 1 -8.3774 -11.3717 0.3606 40 1 -5.9367 -11.0546 0.3238 41 1 1.9196 -5.6647 -0.0157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163812451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:23 Heat of formation + Delta-G solvation = -7.564236 kcal Electronic energy + Delta-G solvation = -24271.615510 eV Core-core repulsion = 20538.138915 eV Total energy + Delta-G solvation = -3733.476595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45141 -39.08666 -38.32394 -37.06950 -34.95816 -33.35890 -31.72688 -31.57961 -31.03796 -30.00051 -28.76656 -26.41977 -24.63271 -23.42715 -22.81712 -22.24316 -21.55322 -21.02073 -18.56184 -17.82112 -17.25068 -16.83461 -16.51168 -16.21801 -15.60359 -15.45490 -15.17712 -15.06759 -14.70419 -14.33297 -13.81332 -13.76393 -13.60168 -13.41329 -13.12041 -12.82571 -12.64485 -12.45292 -11.99921 -11.90790 -11.38639 -11.31421 -11.23682 -11.19142 -10.92671 -10.59287 -10.35955 -10.18364 -9.87845 -9.39892 -9.32970 -9.19787 -8.94114 -8.50656 -7.28200 -6.81387 -6.42540 -4.39007 1.01550 1.13804 2.72086 2.74553 2.89740 3.11804 3.15760 3.19697 3.47932 3.97673 4.01061 4.22005 4.47824 4.56654 4.61908 4.74388 4.75059 4.76871 4.82555 4.97507 5.06716 5.17274 5.23689 5.35530 5.65364 5.68239 5.77935 5.86948 5.91297 5.98778 5.99736 6.08952 6.21405 6.25331 6.43661 6.45525 7.06927 7.10461 7.14309 7.35565 7.43362 8.09274 8.26892 8.48708 8.55680 8.73247 9.20016 10.22304 10.38125 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.002094 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.434901 B =13366.068582 C =14343.431444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.089 0.911 9 C 0.369 3.631 10 N -0.476 5.476 11 C 0.100 3.900 12 C -0.041 4.041 13 N -0.744 5.744 14 C 0.113 3.887 15 C 0.103 3.897 16 H 0.113 0.887 17 O -0.548 6.548 18 C 0.030 3.970 19 O -0.304 6.304 20 C 0.131 3.869 21 C -0.211 4.211 22 C -0.080 4.080 23 C -0.163 4.163 24 C -0.082 4.082 25 C -0.154 4.154 26 C 0.106 3.894 27 N -0.565 5.565 28 H 0.271 0.729 29 H 0.124 0.876 30 H 0.391 0.609 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.376 0.624 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.639 -14.886 -0.180 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.157 4.157 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.449 4.449 8 H 0.107 0.893 9 C 0.128 3.872 10 N -0.193 5.193 11 C -0.077 4.077 12 C -0.146 4.146 13 N -0.383 5.383 14 C -0.014 4.014 15 C 0.043 3.957 16 H 0.131 0.869 17 O -0.353 6.353 18 C -0.047 4.047 19 O -0.217 6.217 20 C 0.086 3.914 21 C -0.230 4.230 22 C -0.098 4.098 23 C -0.181 4.181 24 C -0.100 4.100 25 C -0.172 4.172 26 C -0.069 4.069 27 N -0.284 5.284 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.225 0.775 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.223 0.777 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.012 -14.225 0.286 21.421 hybrid contribution -0.567 0.175 -0.385 0.707 sum -16.579 -14.051 -0.100 21.732 Atomic orbital electron populations 1.70144 1.07136 1.27632 1.30086 1.26012 0.94952 1.01069 0.93648 0.86211 0.80366 0.80377 0.79151 1.19465 1.20232 1.18487 1.19100 0.94501 0.87629 1.43719 0.89297 1.19814 0.85592 0.90740 0.91080 1.69273 1.08432 1.25704 1.15872 1.22655 0.98855 0.87392 0.98823 1.19168 0.93464 0.87460 1.14498 1.43288 1.02290 1.05089 1.87647 1.21500 0.84172 0.94353 1.01391 1.22116 0.89480 0.93536 0.90534 0.86926 1.86625 1.76669 1.56423 1.15545 1.23548 0.96171 0.82501 1.02440 1.86133 1.18645 1.29120 1.87793 1.19099 0.82544 0.94208 0.95574 1.21328 0.94530 0.98333 1.08769 1.20982 0.94366 0.97433 0.97028 1.21073 0.99907 0.92675 1.04442 1.20979 0.92357 0.99116 0.97543 1.20479 0.95376 0.95031 1.06351 1.22203 0.89123 0.96388 0.99171 1.68566 1.40453 0.98098 1.21313 0.91770 0.85890 0.77483 0.92283 0.92904 0.77659 0.90657 0.91274 0.85367 0.85768 0.85977 0.85421 0.85183 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.42 11.41 55.55 0.63 -18.79 16 2 C 0.07 1.76 5.50 -17.34 -0.10 1.67 16 3 Si 0.91 19.00 29.56 -169.99 -5.02 13.97 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.41 -11.55 9.35 -37.80 -0.35 -11.90 16 8 H 0.09 2.41 7.85 -52.49 -0.41 1.99 16 9 C 0.37 10.53 7.35 -158.22 -1.16 9.36 16 10 N -0.48 -13.13 7.84 -12.49 -0.10 -13.23 16 11 C 0.10 2.32 10.58 -16.93 -0.18 2.14 16 12 C -0.04 -0.87 6.72 -83.32 -0.56 -1.43 16 13 N -0.74 -11.85 5.60 -58.23 -0.33 -12.17 16 14 C 0.11 1.40 4.60 -4.04 -0.02 1.38 16 15 C 0.10 1.07 3.33 -26.73 -0.09 0.98 16 16 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 17 O -0.55 -6.20 13.05 -40.06 -0.52 -6.72 16 18 C 0.03 0.27 4.38 37.16 0.16 0.43 16 19 O -0.30 -3.40 10.10 -24.25 -0.24 -3.65 16 20 C 0.13 1.38 6.69 -39.21 -0.26 1.11 16 21 C -0.21 -1.95 9.04 -39.43 -0.36 -2.31 16 22 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 23 C -0.16 -1.24 10.04 -39.56 -0.40 -1.64 16 24 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 25 C -0.15 -1.45 9.99 -39.43 -0.39 -1.85 16 26 C 0.11 2.40 11.20 -16.93 -0.19 2.21 16 27 N -0.57 -15.08 10.34 -12.49 -0.13 -15.21 16 28 H 0.27 6.54 8.29 -40.82 -0.34 6.21 16 29 H 0.12 2.51 6.88 -52.48 -0.36 2.15 16 30 H 0.39 5.80 8.37 -40.82 -0.34 5.45 16 31 H 0.06 0.74 7.99 -51.93 -0.41 0.32 16 32 H 0.05 0.65 7.99 -51.93 -0.41 0.23 16 33 H 0.38 3.20 9.05 45.56 0.41 3.61 16 34 H 0.08 0.61 7.65 -51.93 -0.40 0.21 16 35 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 36 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -32.85 354.53 -9.39 -42.24 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.33 Total: 10.14 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -4.69 Total: -1.93 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.08 Total: -59.39 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.77 Total: -10.37 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.85 -9.39 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163812451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.672 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds