Wall clock time and date at job start Tue Mar 31 2020 10:40:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30725 * 1
3 3 Si 1.86795 * 120.00295 * 2 1
4 4 H 1.48501 * 109.47088 * 270.27347 * 3 2 1
5 5 H 1.48495 * 109.47293 * 30.27549 * 3 2 1
6 6 H 1.48507 * 109.47015 * 150.27507 * 3 2 1
7 7 C 1.40055 * 119.99660 * 180.27458 * 2 1 3
8 8 H 1.07999 * 119.99987 * 179.72757 * 7 2 1
9 9 C 1.41139 * 119.99688 * 359.72578 * 7 2 1
10 10 N 1.33599 * 119.17546 * 359.73139 * 9 7 2
11 11 C 1.31665 * 120.79088 * 179.71594 * 10 9 7
12 12 C 1.40082 * 119.13665 * 0.54691 * 11 10 9
13 13 N 1.38803 * 120.75648 * 179.75202 * 12 11 10
14 14 C 1.46504 * 119.99870 * 359.97438 * 13 12 11
15 15 C 1.53004 * 109.46909 * 180.02562 * 14 13 12
16 16 H 1.09007 * 109.46952 * 59.99792 * 15 14 13
17 17 O 1.42901 * 109.47204 * 299.99815 * 15 14 13
18 18 C 1.53000 * 109.46969 * 179.97438 * 15 14 13
19 19 O 1.42900 * 109.46971 * 185.00048 * 18 15 14
20 20 C 1.35899 * 116.99857 * 180.02562 * 19 18 15
21 21 C 1.38730 * 120.05740 * 359.72659 * 20 19 18
22 22 C 1.38147 * 119.94716 * 179.74492 * 21 20 19
23 23 C 1.38266 * 120.05104 * 0.50659 * 22 21 20
24 24 C 1.38264 * 120.11382 * 359.76700 * 23 22 21
25 25 C 1.38139 * 120.05678 * 359.97438 * 24 23 22
26 26 C 1.40081 * 118.48617 * 359.72542 * 12 11 10
27 27 N 1.31660 * 119.13506 * 0.02562 * 26 12 11
28 28 H 0.97000 * 119.99310 * 359.72764 * 1 2 3
29 29 H 1.08006 * 120.42939 * 180.25828 * 11 10 9
30 30 H 0.97001 * 120.00288 * 179.97438 * 13 12 11
31 31 H 1.08997 * 109.47021 * 299.99801 * 14 13 12
32 32 H 1.08998 * 109.47641 * 59.99861 * 14 13 12
33 33 H 0.96698 * 113.99829 * 300.00012 * 17 15 14
34 34 H 1.09002 * 109.47108 * 305.00108 * 18 15 14
35 35 H 1.09003 * 109.47082 * 65.00312 * 18 15 14
36 36 H 1.07997 * 120.02791 * 359.97438 * 21 20 19
37 37 H 1.08001 * 119.97765 * 180.27287 * 22 21 20
38 38 H 1.07999 * 119.94654 * 179.74451 * 23 22 21
39 39 H 1.08004 * 119.97129 * 179.97438 * 24 23 22
40 40 H 1.07998 * 120.03225 * 179.97438 * 25 24 23
41 41 H 1.07995 * 120.42903 * 179.97438 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3073 0.0000 0.0000
3 14 2.2413 1.6176 0.0000
4 1 2.4830 2.0496 -1.4001
5 1 1.4418 2.6509 0.7058
6 1 3.5418 1.4383 0.6942
7 6 2.0075 -1.2129 -0.0058
8 1 3.0874 -1.2130 -0.0103
9 6 1.3016 -2.4352 -0.0058
10 7 -0.0342 -2.4158 0.0052
11 6 -0.7245 -3.5370 0.0000
12 6 -0.0403 -4.7593 -0.0058
13 7 -0.7344 -5.9613 -0.0063
14 6 -2.1994 -5.9612 -0.0001
15 6 -2.7095 -7.4037 -0.0014
16 1 -2.3424 -7.9197 0.8859
17 8 -2.2381 -8.0746 -1.1718
18 6 -4.2395 -7.4036 0.0056
19 8 -4.7153 -8.7460 0.1219
20 6 -6.0625 -8.9234 0.1426
21 6 -6.9090 -7.8275 0.0586
22 6 -8.2782 -8.0109 0.0745
23 6 -8.8050 -9.2845 0.1847
24 6 -7.9634 -10.3779 0.2743
25 6 -6.5937 -10.2003 0.2534
26 6 1.3604 -4.7408 -0.0116
27 7 1.9862 -3.5825 -0.0110
28 1 -0.4849 0.8401 0.0040
29 1 -1.8044 -3.5145 0.0048
30 1 -0.2495 -6.8014 -0.0106
31 1 -2.5589 -5.4499 0.8928
32 1 -2.5665 -5.4449 -0.8871
33 1 -2.5269 -7.6691 -2.0008
34 1 -4.5989 -6.8162 0.8506
35 1 -4.6070 -6.9670 -0.9231
36 1 -6.4980 -6.8322 -0.0230
37 1 -8.9377 -7.1585 0.0047
38 1 -9.8756 -9.4256 0.2011
39 1 -8.3774 -11.3717 0.3606
40 1 -5.9367 -11.0546 0.3238
41 1 1.9196 -5.6647 -0.0157
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001163812451.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:40:22
Heat of formation + Delta-G solvation = -30.987268 kcal
Electronic energy + Delta-G solvation = -24272.631209 eV
Core-core repulsion = 20538.138915 eV
Total energy + Delta-G solvation = -3734.492294 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.17349 -40.85515 -39.22314 -37.91291 -36.40981 -35.14432 -33.65470 -32.44346
-31.84959 -30.99607 -30.11957 -27.85151 -26.10719 -24.88122 -23.78073 -23.22314
-22.61598 -22.40315 -19.72639 -19.28948 -18.40170 -17.81601 -17.63408 -17.19868
-16.98601 -16.83340 -16.21924 -16.06191 -15.98724 -15.41167 -15.15472 -15.04512
-14.58963 -14.42130 -14.31060 -13.98365 -13.87579 -13.63504 -13.39215 -12.98468
-12.86327 -12.55526 -12.48376 -12.14068 -11.99576 -11.92837 -11.67115 -11.53927
-11.39322 -11.15062 -11.07413 -10.73063 -9.95480 -9.22053 -9.17747 -8.50637
-8.31237 -6.32625 0.39154 0.49033 0.87900 1.02628 1.43285 1.54132
1.58557 1.96605 2.27403 2.84602 2.85042 2.85471 3.39768 3.71006
3.80321 3.89445 3.94594 3.98887 4.03270 4.05480 4.12142 4.25269
4.31428 4.33420 4.35488 4.50354 4.56106 4.60442 4.74114 4.76049
4.97093 5.08839 5.18462 5.33887 5.35817 5.48571 5.56646 5.60770
5.85613 6.24650 6.41322 6.50863 6.59041 6.70348 6.80068 7.05501
7.33090 8.30383 8.51091
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.025861 B = 0.002094 C = 0.001952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1082.434901 B =13366.068582 C =14343.431444
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.763 5.763
2 C 0.026 3.974
3 Si 0.994 3.006
4 H -0.262 1.262
5 H -0.264 1.264
6 H -0.260 1.260
7 C -0.457 4.457
8 H 0.081 0.919
9 C 0.336 3.664
10 N -0.506 5.506
11 C 0.077 3.923
12 C -0.005 4.005
13 N -0.732 5.732
14 C 0.109 3.891
15 C 0.117 3.883
16 H 0.108 0.892
17 O -0.563 6.563
18 C 0.032 3.968
19 O -0.323 6.323
20 C 0.108 3.892
21 C -0.221 4.221
22 C -0.088 4.088
23 C -0.165 4.165
24 C -0.084 4.084
25 C -0.172 4.172
26 C 0.084 3.916
27 N -0.589 5.589
28 H 0.279 0.721
29 H 0.150 0.850
30 H 0.401 0.599
31 H 0.065 0.935
32 H 0.062 0.938
33 H 0.388 0.612
34 H 0.086 0.914
35 H 0.083 0.917
36 H 0.138 0.862
37 H 0.144 0.856
38 H 0.146 0.854
39 H 0.151 0.849
40 H 0.131 0.869
41 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.411 -15.618 -0.254 24.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.388 5.388
2 C -0.195 4.195
3 Si 0.813 3.187
4 H -0.187 1.187
5 H -0.188 1.188
6 H -0.184 1.184
7 C -0.495 4.495
8 H 0.099 0.901
9 C 0.093 3.907
10 N -0.223 5.223
11 C -0.099 4.099
12 C -0.112 4.112
13 N -0.370 5.370
14 C -0.016 4.016
15 C 0.057 3.943
16 H 0.126 0.874
17 O -0.370 6.370
18 C -0.044 4.044
19 O -0.237 6.237
20 C 0.063 3.937
21 C -0.240 4.240
22 C -0.106 4.106
23 C -0.183 4.183
24 C -0.102 4.102
25 C -0.190 4.190
26 C -0.089 4.089
27 N -0.308 5.308
28 H 0.089 0.911
29 H 0.167 0.833
30 H 0.236 0.764
31 H 0.084 0.916
32 H 0.080 0.920
33 H 0.237 0.763
34 H 0.104 0.896
35 H 0.101 0.899
36 H 0.155 0.845
37 H 0.162 0.838
38 H 0.164 0.836
39 H 0.169 0.831
40 H 0.149 0.851
41 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -17.839 -15.048 0.204 23.339
hybrid contribution -0.181 0.084 -0.371 0.421
sum -18.020 -14.964 -0.167 23.424
Atomic orbital electron populations
1.70211 1.08589 1.28998 1.30952 1.26887 0.95873 1.04192 0.92589
0.85050 0.78771 0.75413 0.79428 1.18699 1.18829 1.18394 1.19347
0.94411 0.89054 1.46676 0.90119 1.20119 0.86383 0.91564 0.92647
1.69192 1.08348 1.27818 1.16909 1.23103 1.00053 0.87392 0.99339
1.19149 0.93168 0.88612 1.10238 1.43375 1.03959 1.03683 1.85936
1.21693 0.81694 0.96174 1.02054 1.21897 0.90401 0.91739 0.90230
0.87374 1.86601 1.77035 1.56932 1.16389 1.23517 0.94997 0.82207
1.03669 1.86077 1.19355 1.29982 1.88276 1.19342 0.82362 0.95045
0.96963 1.21521 0.95070 0.98470 1.08944 1.21319 0.94285 0.98527
0.96478 1.21440 1.01206 0.92396 1.03304 1.21309 0.91757 1.00520
0.96612 1.20713 0.96352 0.94955 1.07025 1.22789 0.90384 0.96503
0.99264 1.68541 1.41374 0.98906 1.21992 0.91055 0.83304 0.76415
0.91649 0.91972 0.76275 0.89585 0.89918 0.84468 0.83823 0.83640
0.83095 0.85101 0.82267
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -41.70 11.41 21.84 0.25 -41.45 16
2 C 0.03 1.36 5.50 85.30 0.47 1.83 16
3 Si 0.99 39.61 29.56 68.60 2.03 41.64 16
4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16
5 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16
6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16
7 C -0.46 -26.62 9.35 23.42 0.22 -26.40 16
8 H 0.08 4.59 7.85 -2.91 -0.02 4.56 16
9 C 0.34 19.81 7.35 134.95 0.99 20.80 16
10 N -0.51 -28.45 7.84 -193.42 -1.52 -29.97 16
11 C 0.08 3.54 10.58 85.17 0.90 4.44 16
12 C -0.01 -0.21 6.72 38.93 0.26 0.05 16
13 N -0.73 -21.61 5.60 -338.13 -1.89 -23.50 16
14 C 0.11 2.44 4.60 86.38 0.40 2.84 16
15 C 0.12 2.18 3.33 30.60 0.10 2.28 16
16 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16
17 O -0.56 -11.59 13.05 -144.36 -1.88 -13.48 16
18 C 0.03 0.52 4.38 71.98 0.31 0.84 16
19 O -0.32 -6.90 10.10 -87.80 -0.89 -7.79 16
20 C 0.11 2.16 6.69 22.51 0.15 2.31 16
21 C -0.22 -3.76 9.04 22.37 0.20 -3.56 16
22 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16
23 C -0.17 -2.14 10.04 22.28 0.22 -1.92 16
24 C -0.08 -1.17 10.04 22.25 0.22 -0.94 16
25 C -0.17 -3.10 9.99 22.37 0.22 -2.88 16
26 C 0.08 3.78 11.20 85.17 0.95 4.73 16
27 N -0.59 -32.04 10.34 -193.43 -2.00 -34.05 16
28 H 0.28 13.65 8.29 -92.71 -0.77 12.88 16
29 H 0.15 5.88 6.88 -2.91 -0.02 5.86 16
30 H 0.40 10.81 8.37 -92.71 -0.78 10.03 16
31 H 0.07 1.46 7.99 -2.39 -0.02 1.44 16
32 H 0.06 1.35 7.99 -2.39 -0.02 1.33 16
33 H 0.39 5.78 9.05 -74.06 -0.67 5.11 16
34 H 0.09 1.21 7.65 -2.39 -0.02 1.19 16
35 H 0.08 1.11 7.67 -2.39 -0.02 1.10 16
36 H 0.14 1.93 6.30 -2.91 -0.02 1.91 16
37 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16
38 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16
39 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16
40 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16
41 H 0.16 5.89 8.06 -2.91 -0.02 5.86 16
Total: -1.00 -73.42 354.53 -0.41 -73.83
By element:
Atomic # 1 Polarization: 31.73 SS G_CDS: -0.37 Total: 31.36 kcal
Atomic # 6 Polarization: -2.45 SS G_CDS: 5.86 Total: 3.40 kcal
Atomic # 7 Polarization: -123.81 SS G_CDS: -5.16 Total: -128.97 kcal
Atomic # 8 Polarization: -18.49 SS G_CDS: -2.77 Total: -21.26 kcal
Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal
Total: -73.42 -0.41 -73.83 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001163812451.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.839 kcal
(2) G-P(sol) polarization free energy of solvation -73.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds