Wall clock time and date at job start Tue Mar 31 2020 10:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86795 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27347 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27549 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27507 * 3 2 1 7 7 C 1.40055 * 119.99660 * 180.27458 * 2 1 3 8 8 H 1.07999 * 119.99987 * 179.72757 * 7 2 1 9 9 C 1.41139 * 119.99688 * 359.72578 * 7 2 1 10 10 N 1.33599 * 119.17546 * 359.73139 * 9 7 2 11 11 C 1.31665 * 120.79088 * 179.71594 * 10 9 7 12 12 C 1.40082 * 119.13665 * 0.54691 * 11 10 9 13 13 N 1.38803 * 120.75648 * 179.75202 * 12 11 10 14 14 C 1.46504 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.46909 * 180.02562 * 14 13 12 16 16 H 1.09007 * 109.46952 * 59.99792 * 15 14 13 17 17 O 1.42901 * 109.47204 * 299.99815 * 15 14 13 18 18 C 1.53000 * 109.46969 * 179.97438 * 15 14 13 19 19 O 1.42900 * 109.46971 * 185.00048 * 18 15 14 20 20 C 1.35899 * 116.99857 * 180.02562 * 19 18 15 21 21 C 1.38730 * 120.05740 * 359.72659 * 20 19 18 22 22 C 1.38147 * 119.94716 * 179.74492 * 21 20 19 23 23 C 1.38266 * 120.05104 * 0.50659 * 22 21 20 24 24 C 1.38264 * 120.11382 * 359.76700 * 23 22 21 25 25 C 1.38139 * 120.05678 * 359.97438 * 24 23 22 26 26 C 1.40081 * 118.48617 * 359.72542 * 12 11 10 27 27 N 1.31660 * 119.13506 * 0.02562 * 26 12 11 28 28 H 0.97000 * 119.99310 * 359.72764 * 1 2 3 29 29 H 1.08006 * 120.42939 * 180.25828 * 11 10 9 30 30 H 0.97001 * 120.00288 * 179.97438 * 13 12 11 31 31 H 1.08997 * 109.47021 * 299.99801 * 14 13 12 32 32 H 1.08998 * 109.47641 * 59.99861 * 14 13 12 33 33 H 0.96698 * 113.99829 * 300.00012 * 17 15 14 34 34 H 1.09002 * 109.47108 * 305.00108 * 18 15 14 35 35 H 1.09003 * 109.47082 * 65.00312 * 18 15 14 36 36 H 1.07997 * 120.02791 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.97765 * 180.27287 * 22 21 20 38 38 H 1.07999 * 119.94654 * 179.74451 * 23 22 21 39 39 H 1.08004 * 119.97129 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.03225 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.42903 * 179.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4830 2.0496 -1.4001 5 1 1.4418 2.6509 0.7058 6 1 3.5418 1.4383 0.6942 7 6 2.0075 -1.2129 -0.0058 8 1 3.0874 -1.2130 -0.0103 9 6 1.3016 -2.4352 -0.0058 10 7 -0.0342 -2.4158 0.0052 11 6 -0.7245 -3.5370 0.0000 12 6 -0.0403 -4.7593 -0.0058 13 7 -0.7344 -5.9613 -0.0063 14 6 -2.1994 -5.9612 -0.0001 15 6 -2.7095 -7.4037 -0.0014 16 1 -2.3424 -7.9197 0.8859 17 8 -2.2381 -8.0746 -1.1718 18 6 -4.2395 -7.4036 0.0056 19 8 -4.7153 -8.7460 0.1219 20 6 -6.0625 -8.9234 0.1426 21 6 -6.9090 -7.8275 0.0586 22 6 -8.2782 -8.0109 0.0745 23 6 -8.8050 -9.2845 0.1847 24 6 -7.9634 -10.3779 0.2743 25 6 -6.5937 -10.2003 0.2534 26 6 1.3604 -4.7408 -0.0116 27 7 1.9862 -3.5825 -0.0110 28 1 -0.4849 0.8401 0.0040 29 1 -1.8044 -3.5145 0.0048 30 1 -0.2495 -6.8014 -0.0106 31 1 -2.5589 -5.4499 0.8928 32 1 -2.5665 -5.4449 -0.8871 33 1 -2.5269 -7.6691 -2.0008 34 1 -4.5989 -6.8162 0.8506 35 1 -4.6070 -6.9670 -0.9231 36 1 -6.4980 -6.8322 -0.0230 37 1 -8.9377 -7.1585 0.0047 38 1 -9.8756 -9.4256 0.2011 39 1 -8.3774 -11.3717 0.3606 40 1 -5.9367 -11.0546 0.3238 41 1 1.9196 -5.6647 -0.0157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163812451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:22 Heat of formation + Delta-G solvation = -30.987268 kcal Electronic energy + Delta-G solvation = -24272.631209 eV Core-core repulsion = 20538.138915 eV Total energy + Delta-G solvation = -3734.492294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17349 -40.85515 -39.22314 -37.91291 -36.40981 -35.14432 -33.65470 -32.44346 -31.84959 -30.99607 -30.11957 -27.85151 -26.10719 -24.88122 -23.78073 -23.22314 -22.61598 -22.40315 -19.72639 -19.28948 -18.40170 -17.81601 -17.63408 -17.19868 -16.98601 -16.83340 -16.21924 -16.06191 -15.98724 -15.41167 -15.15472 -15.04512 -14.58963 -14.42130 -14.31060 -13.98365 -13.87579 -13.63504 -13.39215 -12.98468 -12.86327 -12.55526 -12.48376 -12.14068 -11.99576 -11.92837 -11.67115 -11.53927 -11.39322 -11.15062 -11.07413 -10.73063 -9.95480 -9.22053 -9.17747 -8.50637 -8.31237 -6.32625 0.39154 0.49033 0.87900 1.02628 1.43285 1.54132 1.58557 1.96605 2.27403 2.84602 2.85042 2.85471 3.39768 3.71006 3.80321 3.89445 3.94594 3.98887 4.03270 4.05480 4.12142 4.25269 4.31428 4.33420 4.35488 4.50354 4.56106 4.60442 4.74114 4.76049 4.97093 5.08839 5.18462 5.33887 5.35817 5.48571 5.56646 5.60770 5.85613 6.24650 6.41322 6.50863 6.59041 6.70348 6.80068 7.05501 7.33090 8.30383 8.51091 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.002094 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.434901 B =13366.068582 C =14343.431444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.026 3.974 3 Si 0.994 3.006 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.336 3.664 10 N -0.506 5.506 11 C 0.077 3.923 12 C -0.005 4.005 13 N -0.732 5.732 14 C 0.109 3.891 15 C 0.117 3.883 16 H 0.108 0.892 17 O -0.563 6.563 18 C 0.032 3.968 19 O -0.323 6.323 20 C 0.108 3.892 21 C -0.221 4.221 22 C -0.088 4.088 23 C -0.165 4.165 24 C -0.084 4.084 25 C -0.172 4.172 26 C 0.084 3.916 27 N -0.589 5.589 28 H 0.279 0.721 29 H 0.150 0.850 30 H 0.401 0.599 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.388 0.612 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.131 0.869 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.411 -15.618 -0.254 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.093 3.907 10 N -0.223 5.223 11 C -0.099 4.099 12 C -0.112 4.112 13 N -0.370 5.370 14 C -0.016 4.016 15 C 0.057 3.943 16 H 0.126 0.874 17 O -0.370 6.370 18 C -0.044 4.044 19 O -0.237 6.237 20 C 0.063 3.937 21 C -0.240 4.240 22 C -0.106 4.106 23 C -0.183 4.183 24 C -0.102 4.102 25 C -0.190 4.190 26 C -0.089 4.089 27 N -0.308 5.308 28 H 0.089 0.911 29 H 0.167 0.833 30 H 0.236 0.764 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.237 0.763 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.149 0.851 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.839 -15.048 0.204 23.339 hybrid contribution -0.181 0.084 -0.371 0.421 sum -18.020 -14.964 -0.167 23.424 Atomic orbital electron populations 1.70211 1.08589 1.28998 1.30952 1.26887 0.95873 1.04192 0.92589 0.85050 0.78771 0.75413 0.79428 1.18699 1.18829 1.18394 1.19347 0.94411 0.89054 1.46676 0.90119 1.20119 0.86383 0.91564 0.92647 1.69192 1.08348 1.27818 1.16909 1.23103 1.00053 0.87392 0.99339 1.19149 0.93168 0.88612 1.10238 1.43375 1.03959 1.03683 1.85936 1.21693 0.81694 0.96174 1.02054 1.21897 0.90401 0.91739 0.90230 0.87374 1.86601 1.77035 1.56932 1.16389 1.23517 0.94997 0.82207 1.03669 1.86077 1.19355 1.29982 1.88276 1.19342 0.82362 0.95045 0.96963 1.21521 0.95070 0.98470 1.08944 1.21319 0.94285 0.98527 0.96478 1.21440 1.01206 0.92396 1.03304 1.21309 0.91757 1.00520 0.96612 1.20713 0.96352 0.94955 1.07025 1.22789 0.90384 0.96503 0.99264 1.68541 1.41374 0.98906 1.21992 0.91055 0.83304 0.76415 0.91649 0.91972 0.76275 0.89585 0.89918 0.84468 0.83823 0.83640 0.83095 0.85101 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.70 11.41 21.84 0.25 -41.45 16 2 C 0.03 1.36 5.50 85.30 0.47 1.83 16 3 Si 0.99 39.61 29.56 68.60 2.03 41.64 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.46 -26.62 9.35 23.42 0.22 -26.40 16 8 H 0.08 4.59 7.85 -2.91 -0.02 4.56 16 9 C 0.34 19.81 7.35 134.95 0.99 20.80 16 10 N -0.51 -28.45 7.84 -193.42 -1.52 -29.97 16 11 C 0.08 3.54 10.58 85.17 0.90 4.44 16 12 C -0.01 -0.21 6.72 38.93 0.26 0.05 16 13 N -0.73 -21.61 5.60 -338.13 -1.89 -23.50 16 14 C 0.11 2.44 4.60 86.38 0.40 2.84 16 15 C 0.12 2.18 3.33 30.60 0.10 2.28 16 16 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 17 O -0.56 -11.59 13.05 -144.36 -1.88 -13.48 16 18 C 0.03 0.52 4.38 71.98 0.31 0.84 16 19 O -0.32 -6.90 10.10 -87.80 -0.89 -7.79 16 20 C 0.11 2.16 6.69 22.51 0.15 2.31 16 21 C -0.22 -3.76 9.04 22.37 0.20 -3.56 16 22 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16 23 C -0.17 -2.14 10.04 22.28 0.22 -1.92 16 24 C -0.08 -1.17 10.04 22.25 0.22 -0.94 16 25 C -0.17 -3.10 9.99 22.37 0.22 -2.88 16 26 C 0.08 3.78 11.20 85.17 0.95 4.73 16 27 N -0.59 -32.04 10.34 -193.43 -2.00 -34.05 16 28 H 0.28 13.65 8.29 -92.71 -0.77 12.88 16 29 H 0.15 5.88 6.88 -2.91 -0.02 5.86 16 30 H 0.40 10.81 8.37 -92.71 -0.78 10.03 16 31 H 0.07 1.46 7.99 -2.39 -0.02 1.44 16 32 H 0.06 1.35 7.99 -2.39 -0.02 1.33 16 33 H 0.39 5.78 9.05 -74.06 -0.67 5.11 16 34 H 0.09 1.21 7.65 -2.39 -0.02 1.19 16 35 H 0.08 1.11 7.67 -2.39 -0.02 1.10 16 36 H 0.14 1.93 6.30 -2.91 -0.02 1.91 16 37 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 41 H 0.16 5.89 8.06 -2.91 -0.02 5.86 16 Total: -1.00 -73.42 354.53 -0.41 -73.83 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.37 Total: 31.36 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.86 Total: 3.40 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -5.16 Total: -128.97 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -2.77 Total: -21.26 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -73.42 -0.41 -73.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163812451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.839 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds