Wall clock time and date at job start Tue Mar 31 2020 10:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48494 * 109.47572 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47346 * 300.00839 * 3 2 1 6 6 H 1.48507 * 109.47222 * 60.00501 * 3 2 1 7 7 C 1.37873 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.38291 * 119.92556 * 89.99799 * 10 9 7 12 12 C 1.38100 * 120.07632 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.92267 * 0.02562 * 12 11 10 14 14 N 1.39673 * 120.07070 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99991 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47196 * 180.02562 * 15 14 13 17 17 O 1.42893 * 109.47267 * 64.99900 * 16 15 14 18 18 C 1.35956 * 117.00026 * 179.97438 * 17 16 15 19 19 C 1.38657 * 120.06128 * 359.97438 * 18 17 16 20 20 C 1.38184 * 119.96964 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.09281 * 359.97438 * 20 19 18 22 22 C 1.38248 * 120.12705 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.03366 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.05240 * 180.02562 * 23 22 21 25 25 C 1.38909 * 119.85224 * 0.24983 * 13 12 11 26 26 C 1.38107 * 119.92146 * 359.49577 * 25 13 12 27 27 H 0.96996 * 120.00372 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46968 * 59.99562 * 9 7 2 29 29 H 1.09002 * 109.46665 * 299.99998 * 9 7 2 30 30 H 1.08004 * 119.96300 * 0.04159 * 11 10 9 31 31 H 1.07998 * 120.04122 * 179.97438 * 12 11 10 32 32 H 0.96997 * 120.00735 * 359.97438 * 14 13 12 33 33 H 1.08997 * 109.47296 * 59.99259 * 15 14 13 34 34 H 1.09007 * 109.46911 * 299.99709 * 15 14 13 35 35 H 1.08994 * 109.46599 * 304.99374 * 16 15 14 36 36 H 1.09001 * 109.46881 * 185.00032 * 16 15 14 37 37 H 1.08004 * 120.01774 * 0.03769 * 19 18 17 38 38 H 1.08000 * 119.95526 * 180.27319 * 20 19 18 39 39 H 1.08001 * 119.93128 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.98480 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.03771 * 179.72723 * 25 13 12 42 42 H 1.08005 * 119.95889 * 180.24903 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6796 -4.1694 1.1961 12 6 3.5775 -5.2187 1.1986 13 6 4.0297 -5.7466 -0.0041 14 7 4.9382 -6.8075 -0.0052 15 6 5.4137 -7.3634 -1.2746 16 6 6.3918 -8.5065 -0.9962 17 8 5.7014 -9.5775 -0.3495 18 6 6.4314 -10.6792 -0.0308 19 6 7.7834 -10.7284 -0.3345 20 6 8.5234 -11.8493 -0.0102 21 6 7.9178 -12.9222 0.6175 22 6 6.5701 -12.8773 0.9222 23 6 5.8242 -11.7578 0.5999 24 9 4.5072 -11.7134 0.8980 25 6 3.5808 -5.2133 -1.2056 26 6 2.6788 -4.1674 -1.2008 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.3278 -3.7584 2.1309 31 1 3.9283 -5.6279 2.1345 32 1 5.2544 -7.1763 0.8344 33 1 5.9178 -6.5843 -1.8463 34 1 4.5659 -7.7421 -1.8456 35 1 7.1940 -8.1491 -0.3507 36 1 6.8132 -8.8613 -1.9368 37 1 8.2579 -9.8909 -0.8243 38 1 9.5774 -11.8856 -0.2429 39 1 8.4986 -13.7971 0.8695 40 1 6.0994 -13.7164 1.4129 41 1 3.9338 -5.6185 -2.1424 42 1 2.3263 -3.7549 -2.1346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163956170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:26 Heat of formation + Delta-G solvation = -36.754239 kcal Electronic energy + Delta-G solvation = -24022.218843 eV Core-core repulsion = 20267.556513 eV Total energy + Delta-G solvation = -3754.662330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.06578 -40.48137 -38.89171 -37.96247 -35.62588 -33.08499 -31.46556 -31.15738 -30.22119 -30.02669 -28.75654 -25.99666 -24.33914 -22.94183 -22.76811 -22.57131 -21.21593 -19.97080 -18.95974 -17.52779 -17.23534 -16.94100 -16.43301 -16.20797 -15.77352 -15.57931 -15.17813 -14.84776 -14.71792 -14.30413 -14.11679 -13.91772 -13.46513 -13.22809 -13.06478 -12.74568 -12.60476 -12.46645 -12.33943 -11.90955 -11.81672 -11.56776 -11.40662 -11.18256 -11.15624 -10.63970 -10.48497 -10.06777 -9.75330 -9.42773 -9.38744 -8.98768 -8.64363 -8.35491 -8.19306 -6.74230 -5.95090 -3.99468 0.64898 0.79137 2.16621 2.40254 2.59482 3.10875 3.33153 3.40562 3.45934 3.58343 3.81541 4.19065 4.32714 4.46357 4.51821 4.62825 4.67202 4.71812 4.75444 4.83339 4.97811 5.34739 5.37513 5.46160 5.51132 5.57476 5.58758 5.61514 5.70303 5.89761 6.08231 6.16430 6.18694 6.36651 6.46255 6.75501 6.85017 6.89266 7.34038 7.34827 7.45255 7.64892 7.86679 8.00511 8.01903 8.07139 8.44050 9.06698 9.63829 11.13293 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034040 B = 0.001968 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.366835 B =14221.213512 C =14580.380905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.052 3.948 10 C -0.084 4.084 11 C -0.080 4.080 12 C -0.191 4.191 13 C 0.181 3.819 14 N -0.755 5.755 15 C 0.134 3.866 16 C 0.048 3.952 17 O -0.300 6.300 18 C 0.100 3.900 19 C -0.185 4.185 20 C -0.090 4.090 21 C -0.132 4.132 22 C -0.117 4.117 23 C 0.068 3.932 24 F -0.130 7.130 25 C -0.195 4.195 26 C -0.081 4.081 27 H 0.260 0.740 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.396 0.604 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.296 -26.286 -1.209 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.086 4.086 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.082 3.918 14 N -0.390 5.390 15 C 0.009 3.991 16 C -0.027 4.027 17 O -0.214 6.214 18 C 0.054 3.946 19 C -0.203 4.203 20 C -0.108 4.108 21 C -0.150 4.150 22 C -0.136 4.136 23 C 0.049 3.951 24 F -0.109 7.109 25 C -0.217 4.217 26 C -0.100 4.100 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.126 0.874 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.918 -26.148 -1.378 31.728 hybrid contribution 0.600 0.879 0.268 1.098 sum 18.517 -25.268 -1.111 31.347 Atomic orbital electron populations 1.69969 1.05998 1.26513 1.51050 1.25026 0.94866 0.99189 0.95465 0.86517 0.80159 0.83717 0.77531 1.19729 1.21045 1.21035 1.21176 0.93082 0.90090 1.50150 0.92510 1.18258 0.92534 0.89676 0.98006 1.20464 0.99095 0.97170 0.91830 1.20835 0.96031 0.94693 0.98275 1.20461 1.03992 1.01497 0.95372 1.17581 0.91320 0.88833 0.94094 1.44279 1.50599 1.37556 1.06519 1.21235 0.97025 0.92592 0.88213 1.23200 0.95874 0.86075 0.97600 1.86238 1.37184 1.23782 1.74172 1.19067 0.91013 0.87491 0.97076 1.21213 0.92261 1.01055 1.05820 1.21042 1.00164 0.92560 0.97064 1.20947 0.93913 0.99528 1.00632 1.21067 0.94700 0.96811 1.01010 1.17063 0.79090 0.94679 1.04317 1.91536 1.31348 1.96653 1.91347 1.20490 1.04189 1.01687 0.95378 1.20839 0.96072 0.94820 0.98223 0.93032 0.95665 0.95657 0.86561 0.87435 0.77038 0.90272 0.91431 0.91058 0.90357 0.84436 0.85016 0.84829 0.84043 0.87413 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.54 9.09 -34.44 -0.31 -14.86 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.05 1.39 5.10 -29.03 -0.15 1.24 16 10 C -0.08 -1.90 5.07 -104.59 -0.53 -2.43 16 11 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 12 C -0.19 -3.38 9.90 -39.38 -0.39 -3.77 16 13 C 0.18 3.00 6.65 -83.79 -0.56 2.44 16 14 N -0.76 -9.74 5.68 -58.63 -0.33 -10.07 16 15 C 0.13 1.33 5.30 -4.04 -0.02 1.31 16 16 C 0.05 0.37 4.87 37.16 0.18 0.55 16 17 O -0.30 -3.21 9.95 -19.60 -0.20 -3.41 16 18 C 0.10 0.97 6.69 -39.18 -0.26 0.70 16 19 C -0.18 -1.28 9.04 -39.45 -0.36 -1.64 16 20 C -0.09 -0.51 10.04 -39.59 -0.40 -0.91 16 21 C -0.13 -0.75 10.04 -39.57 -0.40 -1.15 16 22 C -0.12 -0.85 10.02 -39.54 -0.40 -1.25 16 23 C 0.07 0.69 7.31 -39.30 -0.29 0.41 16 24 F -0.13 -1.62 17.11 2.25 0.04 -1.58 16 25 C -0.20 -3.39 9.31 -39.38 -0.37 -3.75 16 26 C -0.08 -1.64 9.69 -39.62 -0.38 -2.03 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.40 4.72 8.48 -40.82 -0.35 4.38 16 33 H 0.08 0.71 7.94 -51.93 -0.41 0.29 16 34 H 0.07 0.73 7.96 -51.92 -0.41 0.31 16 35 H 0.07 0.46 7.66 -51.93 -0.40 0.07 16 36 H 0.08 0.43 7.66 -51.93 -0.40 0.03 16 37 H 0.14 0.68 6.30 -52.48 -0.33 0.35 16 38 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 39 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.11 1.58 6.74 -52.48 -0.35 1.23 16 42 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -33.03 363.47 -9.97 -43.00 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.57 Total: 1.58 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -5.11 Total: -25.64 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.40 Total: -36.34 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: -0.20 Total: -3.41 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.03 -9.97 -43.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163956170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.249 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds