Wall clock time and date at job start Tue Mar 31 2020 10:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48494 * 109.47572 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47346 * 300.00839 * 3 2 1 6 6 H 1.48507 * 109.47222 * 60.00501 * 3 2 1 7 7 C 1.37873 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.38291 * 119.92556 * 89.99799 * 10 9 7 12 12 C 1.38100 * 120.07632 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.92267 * 0.02562 * 12 11 10 14 14 N 1.39673 * 120.07070 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99991 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47196 * 180.02562 * 15 14 13 17 17 O 1.42893 * 109.47267 * 64.99900 * 16 15 14 18 18 C 1.35956 * 117.00026 * 179.97438 * 17 16 15 19 19 C 1.38657 * 120.06128 * 359.97438 * 18 17 16 20 20 C 1.38184 * 119.96964 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.09281 * 359.97438 * 20 19 18 22 22 C 1.38248 * 120.12705 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.03366 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.05240 * 180.02562 * 23 22 21 25 25 C 1.38909 * 119.85224 * 0.24983 * 13 12 11 26 26 C 1.38107 * 119.92146 * 359.49577 * 25 13 12 27 27 H 0.96996 * 120.00372 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46968 * 59.99562 * 9 7 2 29 29 H 1.09002 * 109.46665 * 299.99998 * 9 7 2 30 30 H 1.08004 * 119.96300 * 0.04159 * 11 10 9 31 31 H 1.07998 * 120.04122 * 179.97438 * 12 11 10 32 32 H 0.96997 * 120.00735 * 359.97438 * 14 13 12 33 33 H 1.08997 * 109.47296 * 59.99259 * 15 14 13 34 34 H 1.09007 * 109.46911 * 299.99709 * 15 14 13 35 35 H 1.08994 * 109.46599 * 304.99374 * 16 15 14 36 36 H 1.09001 * 109.46881 * 185.00032 * 16 15 14 37 37 H 1.08004 * 120.01774 * 0.03769 * 19 18 17 38 38 H 1.08000 * 119.95526 * 180.27319 * 20 19 18 39 39 H 1.08001 * 119.93128 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.98480 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.03771 * 179.72723 * 25 13 12 42 42 H 1.08005 * 119.95889 * 180.24903 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6796 -4.1694 1.1961 12 6 3.5775 -5.2187 1.1986 13 6 4.0297 -5.7466 -0.0041 14 7 4.9382 -6.8075 -0.0052 15 6 5.4137 -7.3634 -1.2746 16 6 6.3918 -8.5065 -0.9962 17 8 5.7014 -9.5775 -0.3495 18 6 6.4314 -10.6792 -0.0308 19 6 7.7834 -10.7284 -0.3345 20 6 8.5234 -11.8493 -0.0102 21 6 7.9178 -12.9222 0.6175 22 6 6.5701 -12.8773 0.9222 23 6 5.8242 -11.7578 0.5999 24 9 4.5072 -11.7134 0.8980 25 6 3.5808 -5.2133 -1.2056 26 6 2.6788 -4.1674 -1.2008 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.3278 -3.7584 2.1309 31 1 3.9283 -5.6279 2.1345 32 1 5.2544 -7.1763 0.8344 33 1 5.9178 -6.5843 -1.8463 34 1 4.5659 -7.7421 -1.8456 35 1 7.1940 -8.1491 -0.3507 36 1 6.8132 -8.8613 -1.9368 37 1 8.2579 -9.8909 -0.8243 38 1 9.5774 -11.8856 -0.2429 39 1 8.4986 -13.7971 0.8695 40 1 6.0994 -13.7164 1.4129 41 1 3.9338 -5.6185 -2.1424 42 1 2.3263 -3.7549 -2.1346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163956170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:25 Heat of formation + Delta-G solvation = -55.337985 kcal Electronic energy + Delta-G solvation = -24023.024694 eV Core-core repulsion = 20267.556513 eV Total energy + Delta-G solvation = -3755.468182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.83506 -41.08477 -40.25791 -38.59626 -36.87052 -35.06361 -32.77968 -31.66856 -31.65059 -31.05640 -29.86023 -27.66133 -25.26696 -24.56838 -23.61837 -23.41938 -22.32565 -21.48638 -19.55359 -18.50326 -18.32831 -18.10656 -17.63507 -17.24729 -16.84498 -16.62118 -16.16940 -15.91864 -15.73808 -15.39392 -15.08360 -14.98987 -14.68741 -14.45096 -14.42268 -14.11180 -13.78817 -13.53031 -13.22191 -13.14469 -13.06931 -12.85899 -12.56601 -12.45635 -12.38667 -12.05239 -12.00437 -11.63173 -11.57098 -11.35879 -10.59465 -10.58827 -9.94261 -9.69221 -9.22446 -8.30853 -7.96757 -6.30182 0.12975 0.27310 0.66465 0.87858 1.39660 1.39931 1.54034 2.01113 2.41554 2.54892 2.61649 3.12656 3.15223 3.25370 3.63840 3.83879 4.00439 4.04645 4.13329 4.20369 4.23383 4.32569 4.35484 4.44549 4.50138 4.66838 4.73731 4.76824 4.78041 4.98600 5.02611 5.10536 5.18830 5.26520 5.36704 5.39530 5.43724 5.54559 5.69643 5.70726 5.80661 6.01486 6.22550 6.24409 6.28953 6.56000 6.83344 6.89110 7.38080 8.92386 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034040 B = 0.001968 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.366835 B =14221.213512 C =14580.380905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.062 3.938 10 C -0.124 4.124 11 C -0.090 4.090 12 C -0.193 4.193 13 C 0.197 3.803 14 N -0.745 5.745 15 C 0.126 3.874 16 C 0.050 3.950 17 O -0.329 6.329 18 C 0.080 3.920 19 C -0.185 4.185 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.121 4.121 23 C 0.026 3.974 24 F -0.155 7.155 25 C -0.192 4.192 26 C -0.089 4.089 27 H 0.264 0.736 28 H -0.002 1.002 29 H -0.003 1.003 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.402 0.598 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.419 -27.753 -1.775 35.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.126 4.126 11 C -0.109 4.109 12 C -0.215 4.215 13 C 0.095 3.905 14 N -0.378 5.378 15 C 0.003 3.997 16 C -0.025 4.025 17 O -0.244 6.244 18 C 0.034 3.966 19 C -0.203 4.203 20 C -0.103 4.103 21 C -0.146 4.146 22 C -0.139 4.139 23 C 0.006 3.994 24 F -0.134 7.134 25 C -0.214 4.214 26 C -0.108 4.108 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.237 0.763 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.181 0.819 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 22.076 -27.660 -1.948 35.443 hybrid contribution -0.573 1.133 0.433 1.341 sum 21.503 -26.527 -1.515 34.181 Atomic orbital electron populations 1.70099 1.07712 1.27760 1.51758 1.25983 0.95812 1.03225 0.94794 0.85366 0.78914 0.78651 0.77925 1.18881 1.20109 1.20204 1.21476 0.93052 0.91406 1.50243 0.92838 1.17995 0.92827 0.91429 0.95216 1.20159 1.00727 0.97804 0.93909 1.20823 0.97014 0.95815 0.97222 1.20649 1.03143 1.00560 0.97142 1.17684 0.90646 0.88829 0.93388 1.44428 1.49002 1.35959 1.08364 1.21496 0.97570 0.93915 0.86763 1.23290 0.95188 0.84811 0.99175 1.86178 1.38652 1.24678 1.74890 1.19288 0.92104 0.87164 0.98017 1.21519 0.91122 1.02283 1.05413 1.21499 1.01577 0.91693 0.95513 1.21362 0.93221 1.00600 0.99456 1.21336 0.95512 0.96330 1.00766 1.17601 0.78571 0.96504 1.06699 1.91458 1.33179 1.96909 1.91884 1.20687 1.03092 1.00524 0.97132 1.20855 0.96943 0.95863 0.97137 0.92675 0.98364 0.98509 0.87223 0.84844 0.76258 0.88373 0.92116 0.89478 0.87640 0.82247 0.81866 0.81901 0.82867 0.84270 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.44 0.28 -57.85 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.52 -31.25 9.09 25.60 0.23 -31.01 16 8 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.06 3.54 5.10 29.10 0.15 3.69 16 10 C -0.12 -5.88 5.07 -19.84 -0.10 -5.98 16 11 C -0.09 -3.79 9.69 22.25 0.22 -3.57 16 12 C -0.19 -6.63 9.90 22.40 0.22 -6.41 16 13 C 0.20 6.16 6.65 38.21 0.25 6.41 16 14 N -0.75 -17.21 5.68 -339.40 -1.93 -19.13 16 15 C 0.13 2.12 5.30 86.38 0.46 2.57 16 16 C 0.05 0.61 4.87 71.98 0.35 0.96 16 17 O -0.33 -6.56 9.95 -93.06 -0.93 -7.49 16 18 C 0.08 1.44 6.69 22.53 0.15 1.59 16 19 C -0.18 -1.99 9.04 22.36 0.20 -1.79 16 20 C -0.08 -0.63 10.04 22.26 0.22 -0.41 16 21 C -0.13 -1.05 10.04 22.28 0.22 -0.83 16 22 C -0.12 -1.61 10.02 22.29 0.22 -1.39 16 23 C 0.03 0.52 7.31 22.45 0.16 0.68 16 24 F -0.16 -4.04 17.11 44.97 0.77 -3.27 16 25 C -0.19 -6.39 9.31 22.40 0.21 -6.18 16 26 C -0.09 -3.69 9.69 22.25 0.22 -3.48 16 27 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 29 H 0.00 -0.21 8.08 -2.39 -0.02 -0.23 16 30 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.40 8.52 8.48 -92.71 -0.79 7.74 16 33 H 0.10 1.35 7.94 -2.39 -0.02 1.33 16 34 H 0.06 1.15 7.96 -2.38 -0.02 1.13 16 35 H 0.09 0.79 7.66 -2.39 -0.02 0.77 16 36 H 0.11 0.73 7.66 -2.39 -0.02 0.71 16 37 H 0.16 0.89 6.30 -2.91 -0.02 0.87 16 38 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 39 H 0.16 0.34 8.06 -2.91 -0.02 0.31 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.14 3.69 6.74 -2.91 -0.02 3.67 16 42 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -75.80 363.47 4.33 -71.47 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.25 Total: 13.35 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 3.85 Total: -44.72 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.64 Total: -76.98 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.93 Total: -7.49 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.80 4.33 -71.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163956170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.131 kcal (2) G-P(sol) polarization free energy of solvation -75.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds