Wall clock time and date at job start Tue Mar 31 2020 11:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36358 * 119.92120 * 2 1 4 4 C 1.40867 * 119.83455 * 179.97438 * 3 2 1 5 5 C 1.41149 * 120.15245 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99848 * 24.60290 * 5 4 3 7 7 C 1.39864 * 119.99829 * 204.60050 * 5 4 3 8 8 N 1.30908 * 119.99914 * 17.97989 * 7 5 4 9 9 Si 1.86795 * 119.99930 * 197.97663 * 7 5 4 10 10 H 1.48505 * 109.47008 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46918 * 119.99844 * 9 7 5 12 12 H 1.48495 * 109.47455 * 240.00072 * 9 7 5 13 13 C 1.40897 * 119.69326 * 359.97438 * 4 3 2 14 14 C 1.36326 * 119.83370 * 359.73688 * 13 4 3 15 15 C 1.39542 * 119.91928 * 179.97438 * 2 1 3 16 16 N 1.38861 * 119.84100 * 0.02562 * 15 2 1 17 17 C 1.46504 * 119.99929 * 179.97438 * 16 15 2 18 18 C 1.52999 * 109.46838 * 179.97438 * 17 16 15 19 19 O 1.42899 * 109.47368 * 65.00170 * 18 17 16 20 20 C 1.35955 * 117.00451 * 179.97438 * 19 18 17 21 21 C 1.38661 * 120.06122 * 0.02562 * 20 19 18 22 22 C 1.38177 * 119.96992 * 180.02562 * 21 20 19 23 23 C 1.38261 * 120.09669 * 359.97438 * 22 21 20 24 24 C 1.38250 * 120.12564 * 0.02562 * 23 22 21 25 25 C 1.38338 * 120.02871 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.04528 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47118 * 270.02188 * 1 2 3 28 28 H 1.09007 * 109.47108 * 30.01631 * 1 2 3 29 29 H 1.09001 * 109.47373 * 150.01987 * 1 2 3 30 30 H 1.07998 * 120.07992 * 359.95285 * 3 2 1 31 31 H 0.97002 * 119.99820 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.08304 * 180.02562 * 13 4 3 33 33 H 1.08001 * 119.91815 * 180.25118 * 14 13 4 34 34 H 0.97002 * 120.00310 * 359.97438 * 16 15 2 35 35 H 1.08994 * 109.47282 * 60.00108 * 17 16 15 36 36 H 1.08994 * 109.47163 * 299.99858 * 17 16 15 37 37 H 1.08999 * 109.47652 * 305.00158 * 18 17 16 38 38 H 1.09005 * 109.46834 * 184.99999 * 18 17 16 39 39 H 1.08003 * 120.01621 * 359.97438 * 21 20 19 40 40 H 1.08009 * 119.95078 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.93477 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.98555 * 179.72056 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1818 0.0000 4 6 3.5958 1.1797 0.0005 5 6 4.3067 2.3991 0.0000 6 1 3.8437 3.2942 0.3886 7 6 5.6105 2.4483 -0.5038 8 7 6.0482 1.4906 -1.2816 9 14 6.7272 3.8805 -0.0668 10 1 5.9994 4.8227 0.8209 11 1 7.9332 3.3717 0.6347 12 1 7.1369 4.5854 -1.3079 13 6 4.2919 -0.0453 0.0016 14 6 3.5988 -1.2192 0.0076 15 6 2.2030 -1.2095 0.0005 16 7 1.5037 -2.4091 0.0005 17 6 2.2309 -3.6809 0.0005 18 6 1.2317 -4.8396 0.0012 19 8 0.4890 -4.8289 -1.2196 20 6 -0.4479 -5.8008 -1.3807 21 6 -0.6483 -6.7444 -0.3846 22 6 -1.6006 -7.7317 -0.5506 23 6 -2.3547 -7.7800 -1.7085 24 6 -2.1582 -6.8412 -2.7042 25 6 -1.2062 -5.8505 -2.5434 26 9 -1.0135 -4.9332 -3.5165 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8899 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6472 2.1171 -0.0008 31 1 6.9523 1.5249 -1.6312 32 1 5.3719 -0.0543 0.0025 33 1 4.1310 -2.1590 0.0125 34 1 0.5336 -2.4051 0.0005 35 1 2.8572 -3.7413 0.8905 36 1 2.8572 -3.7413 -0.8894 37 1 0.5483 -4.7297 0.8432 38 1 1.7699 -5.7833 0.0908 39 1 -0.0597 -6.7082 0.5202 40 1 -1.7567 -8.4663 0.2257 41 1 -3.0987 -8.5526 -1.8353 42 1 -2.7454 -6.8838 -3.6096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163958631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:17 Heat of formation + Delta-G solvation = -53.338745 kcal Electronic energy + Delta-G solvation = -24751.238193 eV Core-core repulsion = 20995.856705 eV Total energy + Delta-G solvation = -3755.381488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.82658 -41.06491 -40.01103 -38.54951 -36.73276 -35.04635 -33.07813 -31.93728 -31.64118 -30.60265 -29.39089 -27.51062 -26.06600 -24.88618 -23.47072 -23.09285 -21.82312 -21.57463 -19.53599 -18.76837 -18.17850 -17.98041 -17.56995 -17.28143 -16.78327 -16.61017 -16.12576 -15.84720 -15.42175 -15.33828 -14.99796 -14.91858 -14.49123 -14.31163 -14.14335 -13.77054 -13.63075 -13.59985 -13.24555 -13.14216 -12.89610 -12.75347 -12.64322 -12.46309 -12.30023 -12.20605 -12.01623 -11.94224 -11.49256 -11.17314 -11.05566 -10.31390 -9.93380 -9.23223 -9.21271 -8.53798 -8.13112 -6.00636 0.13870 0.28435 1.10325 1.15807 1.39152 1.53775 1.57368 2.03991 2.27095 2.62337 2.82338 2.87276 3.26871 3.66839 3.81525 3.85054 4.03926 4.08699 4.20864 4.32982 4.34032 4.35667 4.41627 4.46309 4.65515 4.72600 4.81610 4.90778 5.00374 5.00829 5.08158 5.11496 5.11908 5.27379 5.31544 5.43925 5.52208 5.69265 5.73287 5.87140 5.98510 6.20356 6.31039 6.41131 6.66634 6.86548 7.08732 7.12636 7.29293 8.48496 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.002383 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.405708 B =11745.385407 C =11873.405206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.142 4.142 3 C -0.196 4.196 4 C 0.037 3.963 5 C -0.504 4.504 6 H 0.066 0.934 7 C 0.030 3.970 8 N -0.843 5.843 9 Si 0.978 3.022 10 H -0.260 1.260 11 H -0.265 1.265 12 H -0.269 1.269 13 C -0.148 4.148 14 C -0.173 4.173 15 C 0.111 3.889 16 N -0.750 5.750 17 C 0.133 3.867 18 C 0.055 3.945 19 O -0.331 6.331 20 C 0.078 3.922 21 C -0.186 4.186 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.119 4.119 25 C 0.024 3.976 26 F -0.157 7.157 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.282 0.718 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.395 0.605 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -21.134 3.086 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C -0.217 4.217 4 C 0.034 3.966 5 C -0.536 4.536 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.471 5.471 9 Si 0.799 3.201 10 H -0.184 1.184 11 H -0.190 1.190 12 H -0.194 1.194 13 C -0.168 4.168 14 C -0.195 4.195 15 C 0.012 3.988 16 N -0.387 5.387 17 C 0.009 3.991 18 C -0.019 4.019 19 O -0.246 6.246 20 C 0.032 3.968 21 C -0.204 4.204 22 C -0.101 4.101 23 C -0.145 4.145 24 C -0.138 4.138 25 C 0.004 3.996 26 F -0.136 7.136 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.230 0.770 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.184 0.816 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.639 -21.146 2.787 25.317 hybrid contribution 0.723 1.175 -0.357 1.425 sum -12.916 -19.971 2.429 23.907 Atomic orbital electron populations 1.20483 0.90710 1.01642 1.01677 1.19089 0.95976 0.91640 1.07953 1.20645 0.93781 0.96136 1.11089 1.17823 0.91925 0.93752 0.93121 1.19595 0.99361 0.95874 1.38739 0.91534 1.26638 0.99458 0.99913 0.92153 1.69941 1.18179 1.34424 1.24549 0.85235 0.77859 0.78049 0.78936 1.18418 1.19022 1.19432 1.20844 0.98946 0.92120 1.04883 1.20247 0.92506 0.97380 1.09401 1.17265 0.90571 0.85905 1.05076 1.43934 1.07172 1.01550 1.86008 1.21278 0.94066 0.82249 1.01521 1.23247 0.94050 0.99687 0.84919 1.86204 1.48447 1.48599 1.41311 1.19376 0.91415 0.91203 0.94834 1.21518 1.03169 0.96383 0.99359 1.21500 0.93190 0.97156 0.98257 1.21370 1.01139 0.99205 0.92811 1.21340 0.96634 0.93543 1.02253 1.17647 1.02150 0.93285 0.86488 1.91456 1.94842 1.65666 1.61593 0.91195 0.92213 0.92215 0.88814 0.90813 0.88308 0.87448 0.76956 0.89569 0.93910 0.89420 0.87803 0.82418 0.81665 0.81624 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 9.55 71.24 0.68 -2.40 16 2 C -0.14 -6.45 5.86 -19.99 -0.12 -6.57 16 3 C -0.20 -10.20 9.37 22.47 0.21 -9.99 16 4 C 0.04 2.10 5.57 -21.27 -0.12 1.99 16 5 C -0.50 -29.15 9.03 23.38 0.21 -28.93 16 6 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 7 C 0.03 1.62 5.13 85.22 0.44 2.06 16 8 N -0.84 -47.30 10.96 21.82 0.24 -47.06 16 9 Si 0.98 41.13 29.60 68.60 2.03 43.16 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 13 C -0.15 -8.21 8.64 22.47 0.19 -8.01 16 14 C -0.17 -8.33 9.23 22.15 0.20 -8.13 16 15 C 0.11 4.89 6.65 38.67 0.26 5.15 16 16 N -0.75 -25.71 5.55 -339.00 -1.88 -27.60 16 17 C 0.13 3.65 5.28 86.38 0.46 4.11 16 18 C 0.06 1.10 4.87 71.98 0.35 1.45 16 19 O -0.33 -8.90 9.95 -93.05 -0.93 -9.82 16 20 C 0.08 1.79 6.69 22.53 0.15 1.94 16 21 C -0.19 -2.77 9.04 22.36 0.20 -2.57 16 22 C -0.08 -0.87 10.04 22.26 0.22 -0.64 16 23 C -0.13 -1.38 10.04 22.28 0.22 -1.16 16 24 C -0.12 -1.96 10.02 22.30 0.22 -1.74 16 25 C 0.02 0.58 7.31 22.45 0.16 0.75 16 26 F -0.16 -4.82 17.11 44.97 0.77 -4.05 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 2.01 8.08 -2.38 -0.02 1.99 16 29 H 0.06 1.91 6.53 -2.39 -0.02 1.89 16 30 H 0.09 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 32 H 0.10 5.75 6.16 -2.91 -0.02 5.74 16 33 H 0.11 4.59 6.68 -2.91 -0.02 4.57 16 34 H 0.39 12.47 6.42 -92.71 -0.60 11.87 16 35 H 0.09 2.13 7.91 -2.39 -0.02 2.11 16 36 H 0.04 1.34 7.94 -2.39 -0.02 1.32 16 37 H 0.09 1.40 7.66 -2.39 -0.02 1.38 16 38 H 0.10 1.43 7.66 -2.38 -0.02 1.42 16 39 H 0.16 1.59 6.30 -2.91 -0.02 1.57 16 40 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 41 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -71.79 354.75 4.64 -67.15 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.45 Total: 30.94 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 3.95 Total: -52.71 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.64 Total: -74.66 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.93 Total: -9.82 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.77 Total: -4.05 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -71.79 4.64 -67.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163958631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.811 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds