Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39043 * 119.32000 * 2 1 4 4 C 1.38439 * 118.84235 * 180.02562 * 3 2 1 5 5 C 1.41154 * 118.60793 * 359.97438 * 4 3 2 6 6 C 1.39564 * 118.92508 * 359.97438 * 5 4 3 7 7 N 1.38210 * 119.98757 * 179.97438 * 6 5 4 8 8 C 1.46843 * 111.00567 * 242.33775 * 7 6 5 9 9 C 1.53038 * 109.52641 * 174.15890 * 8 7 6 10 10 C 1.53116 * 109.27687 * 59.17954 * 9 8 7 11 11 C 1.53112 * 109.16042 * 302.34479 * 10 9 8 12 12 H 1.08998 * 109.50656 * 297.67503 * 11 10 9 13 13 C 1.50705 * 109.50649 * 177.59713 * 11 10 9 14 14 H 1.07996 * 120.00299 * 240.08194 * 13 11 10 15 15 C 1.37883 * 119.99671 * 60.34990 * 13 11 10 16 16 N 1.31508 * 120.00000 * 359.73022 * 15 13 11 17 17 Si 1.86796 * 119.99610 * 179.72648 * 15 13 11 18 18 H 1.48509 * 109.47002 * 90.00472 * 17 15 13 19 19 H 1.48501 * 109.47013 * 210.00042 * 17 15 13 20 20 H 1.48494 * 109.47432 * 330.00543 * 17 15 13 21 21 C 1.46847 * 110.99584 * 118.08408 * 7 6 5 22 22 N 1.31633 * 119.31960 * 180.26807 * 2 1 3 23 23 C 1.47078 * 105.90343 * 180.02562 * 5 4 3 24 24 O 1.21508 * 125.62298 * 179.97438 * 23 5 4 25 25 N 1.34577 * 108.76096 * 359.97438 * 23 5 4 26 26 C 1.34646 * 111.05566 * 0.02562 * 25 23 5 27 27 O 1.21416 * 125.80451 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.46933 * 90.00817 * 1 2 3 29 29 H 1.09001 * 109.47364 * 210.00175 * 1 2 3 30 30 H 1.08999 * 109.47253 * 330.00831 * 1 2 3 31 31 H 1.08001 * 120.57952 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46432 * 54.14015 * 8 7 6 33 33 H 1.09005 * 109.46209 * 294.17769 * 8 7 6 34 34 H 1.08998 * 109.50470 * 299.23691 * 9 8 7 35 35 H 1.08997 * 109.50186 * 179.11913 * 9 8 7 36 36 H 1.09003 * 109.52432 * 182.43897 * 10 9 8 37 37 H 1.09003 * 109.57750 * 62.28351 * 10 9 8 38 38 H 0.97007 * 120.00146 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.43045 * 65.81116 * 21 7 6 40 40 H 1.09006 * 109.49400 * 305.83926 * 21 7 6 41 41 H 0.97002 * 124.47217 * 180.02562 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.2123 0.0000 4 6 3.5722 1.2008 -0.0005 5 6 4.2377 -0.0440 -0.0005 6 6 3.4787 -1.2152 0.0006 7 7 4.1076 -2.4460 0.0001 8 6 3.7790 -3.2045 -1.2135 9 6 4.6030 -4.4937 -1.2498 10 6 4.2916 -5.3278 -0.0041 11 6 4.5968 -4.4977 1.2458 12 1 5.6584 -4.2514 1.2688 13 6 4.2374 -5.2901 2.4763 14 1 3.4969 -4.9114 3.1652 15 6 4.8581 -6.4959 2.7254 16 7 5.7597 -6.9569 1.8864 17 14 4.4181 -7.4743 4.2545 18 1 3.2972 -8.3982 3.9455 19 1 5.5987 -8.2590 4.6967 20 1 4.0085 -6.5438 5.3368 21 6 3.7738 -3.2079 1.2102 22 7 2.1516 -1.1477 -0.0054 23 6 5.6751 0.2675 -0.0005 24 8 6.5760 -0.5480 -0.0001 25 7 5.8283 1.6045 -0.0011 26 6 4.6349 2.2281 -0.0010 27 8 4.4614 3.4298 -0.0018 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6462 2.1467 -0.0004 32 1 4.0090 -2.6017 -2.0921 33 1 2.7174 -3.4519 -1.2109 34 1 5.6645 -4.2468 -1.2664 35 1 4.3473 -5.0639 -2.1428 36 1 4.9083 -6.2266 -0.0040 37 1 3.2384 -5.6087 -0.0065 38 1 6.1967 -7.8051 2.0619 39 1 2.7121 -3.4548 1.2019 40 1 4.0002 -2.6081 2.0918 41 1 6.6852 2.0590 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = -2.945474 kcal Electronic energy + Delta-G solvation = -26476.677392 eV Core-core repulsion = 22743.401082 eV Total energy + Delta-G solvation = -3733.276310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50226 -40.09422 -38.73512 -38.00698 -35.92316 -34.24724 -32.82305 -32.33697 -30.51689 -29.91575 -28.16744 -25.51468 -24.99049 -24.59013 -22.55810 -22.00142 -21.51474 -20.30027 -18.86885 -18.22071 -17.60122 -16.93752 -16.60329 -16.17781 -16.04404 -15.51377 -15.04405 -14.85230 -14.43501 -14.14463 -14.12677 -13.98926 -13.65934 -13.00685 -12.75350 -12.69695 -12.49705 -12.41884 -12.18629 -11.77662 -11.14130 -10.94667 -10.78061 -10.73221 -10.64167 -10.53057 -10.30940 -10.14126 -9.99262 -9.86415 -9.53767 -9.20372 -9.04063 -8.73230 -8.34109 -8.11350 -5.97264 -4.03610 -0.22510 0.56257 1.86640 2.37210 2.79099 3.31528 3.33533 3.38326 3.38717 3.41524 3.75202 3.97360 4.24271 4.44947 4.52525 4.74809 4.81738 5.17663 5.30016 5.33033 5.39053 5.49605 5.53751 5.65546 5.75970 5.81823 5.97176 6.02208 6.16587 6.23258 6.37960 6.42043 6.64080 6.71511 6.88386 6.98373 7.11046 7.34012 7.42861 7.59007 7.63174 7.69751 7.76368 8.06813 8.15511 8.44887 8.99534 9.60534 11.08852 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.003971 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.162305 B = 7048.767138 C = 7561.733908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.176 3.824 3 C -0.114 4.114 4 C -0.091 4.091 5 C -0.185 4.185 6 C 0.395 3.605 7 N -0.489 5.489 8 C 0.071 3.929 9 C -0.117 4.117 10 C -0.111 4.111 11 C 0.056 3.944 12 H 0.038 0.962 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.076 3.924 22 N -0.492 5.492 23 C 0.579 3.421 24 O -0.424 6.424 25 N -0.681 5.681 26 C 0.585 3.415 27 O -0.467 6.467 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.260 0.740 39 H 0.040 0.960 40 H 0.058 0.942 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 16.296 -6.781 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.032 3.968 3 C -0.135 4.135 4 C -0.103 4.103 5 C -0.193 4.193 6 C 0.169 3.831 7 N -0.212 5.212 8 C -0.055 4.055 9 C -0.155 4.155 10 C -0.149 4.149 11 C 0.037 3.963 12 H 0.056 0.944 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.049 4.049 22 N -0.205 5.205 23 C 0.365 3.635 24 O -0.291 6.291 25 N -0.349 5.349 26 C 0.372 3.628 27 O -0.337 6.337 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.170 0.830 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -6.870 15.512 -6.807 18.279 hybrid contribution -0.090 0.327 0.854 0.919 sum -6.960 15.839 -5.953 18.296 Atomic orbital electron populations 1.20861 0.87501 1.04417 1.03838 1.21655 0.97534 0.87181 0.90442 1.21536 0.91570 1.00183 1.00195 1.20749 0.94806 0.94037 1.00711 1.20991 0.94726 0.93978 1.09571 1.19614 0.85308 0.91684 0.86526 1.60190 1.53974 1.01217 1.05861 1.22073 0.98776 0.95177 0.89432 1.21697 0.99949 0.94192 0.99652 1.21669 0.99930 1.00609 0.92663 1.18693 0.95750 0.88169 0.93672 0.94355 1.21077 1.22815 1.04561 1.06907 0.92806 1.24912 0.94853 0.97470 0.96464 1.69888 1.26320 1.20315 1.35976 0.86616 0.77870 0.80122 0.83494 1.20741 1.21239 1.20002 1.22436 0.99226 0.96031 0.87183 1.68078 1.10066 1.29511 1.12871 1.17869 0.88914 0.81200 0.75564 1.90943 1.46975 1.50427 1.40742 1.44523 1.10712 1.09417 1.70280 1.18115 0.83266 0.87121 0.74330 1.90833 1.84821 1.13794 1.44302 0.89503 0.89520 0.89944 0.82953 0.92491 0.93773 0.91654 0.92892 0.88833 0.94812 0.93003 0.94181 0.92360 0.72769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.16 36.01 0.37 -0.43 16 2 C 0.18 1.95 6.80 -82.38 -0.56 1.39 16 3 C -0.11 -1.14 9.78 -39.21 -0.38 -1.52 16 4 C -0.09 -1.11 6.47 -104.80 -0.68 -1.79 16 5 C -0.18 -2.75 6.37 -104.71 -0.67 -3.41 16 6 C 0.39 6.55 5.29 -155.21 -0.82 5.73 16 7 N -0.49 -9.36 4.60 -173.21 -0.80 -10.16 16 8 C 0.07 1.28 5.26 -3.84 -0.02 1.26 16 9 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 10 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 11 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 12 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 16 N -0.89 -25.14 11.36 55.43 0.63 -24.51 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.08 1.64 4.49 -3.83 -0.02 1.62 16 22 N -0.49 -7.31 9.62 -8.48 -0.08 -7.39 16 23 C 0.58 8.51 8.42 -12.76 -0.11 8.40 16 24 O -0.42 -7.70 18.04 5.36 0.10 -7.61 16 25 N -0.68 -7.55 5.77 -13.43 -0.08 -7.63 16 26 C 0.58 6.87 8.47 -12.40 -0.11 6.77 16 27 O -0.47 -6.14 18.04 5.44 0.10 -6.04 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.04 0.78 8.03 -51.93 -0.42 0.37 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 40 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.43 3.54 8.96 -40.82 -0.37 3.17 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -31.53 345.47 -9.11 -40.64 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.28 Total: -0.07 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -3.89 Total: 1.42 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.33 Total: -49.70 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.19 Total: -13.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.53 -9.11 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.696 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds