Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39043 * 119.32000 * 2 1 4 4 C 1.38439 * 118.84235 * 180.02562 * 3 2 1 5 5 C 1.41154 * 118.60793 * 359.97438 * 4 3 2 6 6 C 1.39564 * 118.92508 * 359.97438 * 5 4 3 7 7 N 1.38210 * 119.98757 * 179.97438 * 6 5 4 8 8 C 1.46843 * 111.00567 * 242.33775 * 7 6 5 9 9 C 1.53038 * 109.52641 * 174.15890 * 8 7 6 10 10 C 1.53116 * 109.27687 * 59.17954 * 9 8 7 11 11 C 1.53112 * 109.16042 * 302.34479 * 10 9 8 12 12 H 1.08998 * 109.50656 * 297.67503 * 11 10 9 13 13 C 1.50705 * 109.50649 * 177.59713 * 11 10 9 14 14 H 1.07996 * 120.00299 * 240.08194 * 13 11 10 15 15 C 1.37883 * 119.99671 * 60.34990 * 13 11 10 16 16 N 1.31508 * 120.00000 * 359.73022 * 15 13 11 17 17 Si 1.86796 * 119.99610 * 179.72648 * 15 13 11 18 18 H 1.48509 * 109.47002 * 90.00472 * 17 15 13 19 19 H 1.48501 * 109.47013 * 210.00042 * 17 15 13 20 20 H 1.48494 * 109.47432 * 330.00543 * 17 15 13 21 21 C 1.46847 * 110.99584 * 118.08408 * 7 6 5 22 22 N 1.31633 * 119.31960 * 180.26807 * 2 1 3 23 23 C 1.47078 * 105.90343 * 180.02562 * 5 4 3 24 24 O 1.21508 * 125.62298 * 179.97438 * 23 5 4 25 25 N 1.34577 * 108.76096 * 359.97438 * 23 5 4 26 26 C 1.34646 * 111.05566 * 0.02562 * 25 23 5 27 27 O 1.21416 * 125.80451 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.46933 * 90.00817 * 1 2 3 29 29 H 1.09001 * 109.47364 * 210.00175 * 1 2 3 30 30 H 1.08999 * 109.47253 * 330.00831 * 1 2 3 31 31 H 1.08001 * 120.57952 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46432 * 54.14015 * 8 7 6 33 33 H 1.09005 * 109.46209 * 294.17769 * 8 7 6 34 34 H 1.08998 * 109.50470 * 299.23691 * 9 8 7 35 35 H 1.08997 * 109.50186 * 179.11913 * 9 8 7 36 36 H 1.09003 * 109.52432 * 182.43897 * 10 9 8 37 37 H 1.09003 * 109.57750 * 62.28351 * 10 9 8 38 38 H 0.97007 * 120.00146 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.43045 * 65.81116 * 21 7 6 40 40 H 1.09006 * 109.49400 * 305.83926 * 21 7 6 41 41 H 0.97002 * 124.47217 * 180.02562 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.2123 0.0000 4 6 3.5722 1.2008 -0.0005 5 6 4.2377 -0.0440 -0.0005 6 6 3.4787 -1.2152 0.0006 7 7 4.1076 -2.4460 0.0001 8 6 3.7790 -3.2045 -1.2135 9 6 4.6030 -4.4937 -1.2498 10 6 4.2916 -5.3278 -0.0041 11 6 4.5968 -4.4977 1.2458 12 1 5.6584 -4.2514 1.2688 13 6 4.2374 -5.2901 2.4763 14 1 3.4969 -4.9114 3.1652 15 6 4.8581 -6.4959 2.7254 16 7 5.7597 -6.9569 1.8864 17 14 4.4181 -7.4743 4.2545 18 1 3.2972 -8.3982 3.9455 19 1 5.5987 -8.2590 4.6967 20 1 4.0085 -6.5438 5.3368 21 6 3.7738 -3.2079 1.2102 22 7 2.1516 -1.1477 -0.0054 23 6 5.6751 0.2675 -0.0005 24 8 6.5760 -0.5480 -0.0001 25 7 5.8283 1.6045 -0.0011 26 6 4.6349 2.2281 -0.0010 27 8 4.4614 3.4298 -0.0018 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6462 2.1467 -0.0004 32 1 4.0090 -2.6017 -2.0921 33 1 2.7174 -3.4519 -1.2109 34 1 5.6645 -4.2468 -1.2664 35 1 4.3473 -5.0639 -2.1428 36 1 4.9083 -6.2266 -0.0040 37 1 3.2384 -5.6087 -0.0065 38 1 6.1967 -7.8051 2.0619 39 1 2.7121 -3.4548 1.2019 40 1 4.0002 -2.6081 2.0918 41 1 6.6852 2.0590 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = -25.423561 kcal Electronic energy + Delta-G solvation = -26477.652115 eV Core-core repulsion = 22743.401082 eV Total energy + Delta-G solvation = -3734.251033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.54097 -41.25547 -39.87049 -39.41382 -37.03305 -35.89937 -34.09132 -33.70923 -31.86120 -31.67344 -29.03765 -26.99216 -26.59217 -25.81099 -23.96710 -23.26453 -22.94924 -21.39726 -20.52777 -19.34920 -18.85720 -18.41402 -17.69001 -17.64636 -17.10631 -16.81973 -16.50190 -16.08941 -16.02483 -15.35482 -15.25469 -15.19060 -14.97691 -14.51579 -14.41139 -14.20480 -13.73852 -13.43214 -13.16578 -13.10271 -12.84317 -12.69326 -12.57709 -12.16261 -11.91446 -11.81810 -11.80964 -11.59607 -11.47611 -11.26388 -11.17962 -10.86008 -10.72915 -10.39915 -10.08026 -9.61561 -8.08047 -6.22649 -1.23971 -0.44944 0.84766 1.40512 1.42011 1.42686 1.52938 1.75346 2.29404 2.37355 2.42628 2.58583 2.96512 3.19227 3.26573 3.57360 3.67094 3.98178 4.10350 4.17495 4.24862 4.38059 4.51527 4.54121 4.59288 4.79485 4.82224 4.85661 4.87597 4.93421 4.96015 5.02742 5.09866 5.20507 5.32009 5.35908 5.48132 5.62797 5.78743 5.95684 6.01829 6.14296 6.26159 6.38034 6.60261 6.62768 6.87877 7.45073 8.97002 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.003971 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.162305 B = 7048.767138 C = 7561.733908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.179 3.821 3 C -0.086 4.086 4 C -0.092 4.092 5 C -0.207 4.207 6 C 0.368 3.632 7 N -0.502 5.502 8 C 0.078 3.922 9 C -0.109 4.109 10 C -0.101 4.101 11 C 0.055 3.945 12 H -0.006 1.006 13 C -0.536 4.536 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.956 3.044 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.098 3.902 22 N -0.514 5.514 23 C 0.583 3.417 24 O -0.471 6.471 25 N -0.665 5.665 26 C 0.597 3.403 27 O -0.473 6.473 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.197 0.803 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.261 0.739 39 H 0.036 0.964 40 H 0.045 0.955 41 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 18.607 -7.099 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.035 3.965 3 C -0.106 4.106 4 C -0.103 4.103 5 C -0.215 4.215 6 C 0.144 3.856 7 N -0.226 5.226 8 C -0.048 4.048 9 C -0.147 4.147 10 C -0.139 4.139 11 C 0.036 3.964 12 H 0.012 0.988 13 C -0.575 4.575 14 H 0.070 0.930 15 C -0.183 4.183 16 N -0.553 5.553 17 Si 0.781 3.219 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.028 4.028 22 N -0.228 5.228 23 C 0.370 3.630 24 O -0.342 6.342 25 N -0.333 5.333 26 C 0.384 3.616 27 O -0.344 6.344 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.214 0.786 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -9.484 17.868 -7.134 21.450 hybrid contribution 0.620 -0.256 0.933 1.149 sum -8.864 17.613 -6.200 20.669 Atomic orbital electron populations 1.21041 0.84333 1.05601 1.05377 1.22413 0.99349 0.86413 0.88313 1.22050 0.90641 1.01526 0.96403 1.20872 0.95776 0.92569 1.01089 1.20966 0.94869 0.94694 1.10972 1.19422 0.86357 0.90619 0.89240 1.59960 1.55447 1.02157 1.04998 1.22008 0.98388 0.94446 0.89913 1.21590 0.99360 0.94984 0.98737 1.21445 0.98838 0.99709 0.93945 1.18578 0.93624 0.90123 0.94047 0.98766 1.21424 1.22961 1.05232 1.07862 0.93036 1.25707 0.94712 0.98458 0.99399 1.70038 1.27092 1.20617 1.37542 0.85592 0.77752 0.78650 0.79863 1.19807 1.20939 1.19444 1.21948 0.97909 0.94527 0.88407 1.68013 1.09184 1.31718 1.13900 1.18000 0.88724 0.81843 0.74399 1.90923 1.48146 1.51770 1.43322 1.44316 1.11553 1.08149 1.69332 1.17947 0.83081 0.86765 0.73774 1.90846 1.84827 1.14006 1.44746 0.87522 0.90569 0.86527 0.78558 0.90369 0.93417 0.93285 0.90128 0.91960 0.95078 0.92982 0.94528 0.93690 0.71221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.16 71.24 0.72 -0.35 16 2 C 0.18 3.36 6.80 42.78 0.29 3.65 16 3 C -0.09 -1.35 9.78 22.51 0.22 -1.13 16 4 C -0.09 -1.98 6.47 -19.98 -0.13 -2.11 16 5 C -0.21 -6.04 6.37 -19.92 -0.13 -6.17 16 6 C 0.37 12.14 5.29 133.29 0.70 12.85 16 7 N -0.50 -19.76 4.60 -701.90 -3.23 -23.00 16 8 C 0.08 2.80 5.26 86.33 0.45 3.25 16 9 C -0.11 -4.32 6.09 30.65 0.19 -4.14 16 10 C -0.10 -4.93 5.03 30.67 0.15 -4.78 16 11 C 0.06 2.92 2.26 -11.49 -0.03 2.89 16 12 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 13 C -0.54 -30.37 8.56 25.60 0.22 -30.16 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C 0.02 0.92 5.31 84.66 0.45 1.37 16 16 N -0.91 -53.83 11.36 21.45 0.24 -53.59 16 17 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C 0.10 4.41 4.49 86.33 0.39 4.79 16 22 N -0.51 -14.53 9.62 -180.73 -1.74 -16.27 16 23 C 0.58 17.32 8.42 86.59 0.73 18.05 16 24 O -0.47 -17.93 18.04 -3.74 -0.07 -18.00 16 25 N -0.67 -14.08 5.77 -433.22 -2.50 -16.59 16 26 C 0.60 12.63 8.47 86.80 0.74 13.37 16 27 O -0.47 -11.02 18.04 -3.45 -0.06 -11.08 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 0.44 8.07 -2.39 -0.02 0.42 16 31 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.08 2.47 8.10 -2.38 -0.02 2.45 16 33 H 0.05 1.67 8.03 -2.38 -0.02 1.65 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.06 3.41 6.17 -2.39 -0.01 3.40 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 39 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 40 H 0.04 2.08 8.10 -2.38 -0.02 2.06 16 41 H 0.44 6.87 8.96 -92.71 -0.83 6.04 16 Total: -1.00 -72.66 345.47 -0.11 -72.77 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.25 Total: 8.14 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.97 Total: 11.38 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -7.23 Total: -109.44 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.13 Total: -29.08 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.66 -0.11 -72.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.344 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds