Wall clock time and date at job start Tue Mar 31 2020 11:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99536 * 2 1 4 4 C 1.38766 * 120.04770 * 359.97438 * 3 2 1 5 5 C 1.38134 * 119.99575 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.08171 * 0.02562 * 5 4 3 7 7 C 1.38476 * 120.08224 * 0.02562 * 6 5 4 8 8 F 1.35101 * 119.99588 * 179.97438 * 7 6 5 9 9 C 1.38382 * 120.00593 * 0.25965 * 7 6 5 10 10 C 1.50705 * 120.03716 * 179.72326 * 9 7 6 11 11 N 1.46501 * 109.47412 * 89.99855 * 10 9 7 12 12 C 1.38860 * 119.99698 * 179.97438 * 11 10 9 13 13 C 1.39582 * 119.84464 * 359.71965 * 12 11 10 14 14 C 1.36324 * 120.16063 * 179.75928 * 13 12 11 15 15 C 1.40906 * 119.83253 * 0.51527 * 14 13 12 16 16 C 1.41143 * 120.15191 * 179.75814 * 15 14 13 17 17 H 1.07997 * 119.99456 * 150.10962 * 16 15 14 18 18 C 1.39858 * 120.00157 * 330.10856 * 16 15 14 19 19 N 1.30910 * 119.99846 * 161.72858 * 18 16 15 20 20 Si 1.86795 * 120.00157 * 341.73053 * 18 16 15 21 21 H 1.48505 * 109.47378 * 95.41474 * 20 18 16 22 22 H 1.48508 * 109.47305 * 215.41376 * 20 18 16 23 23 H 1.48495 * 109.47352 * 335.41414 * 20 18 16 24 24 C 1.40867 * 119.68855 * 359.74233 * 15 14 13 25 25 C 1.36352 * 119.83786 * 359.97438 * 24 15 14 26 26 C 1.50700 * 119.91734 * 179.97438 * 25 24 15 27 27 H 1.08999 * 109.47372 * 300.00184 * 1 2 3 28 28 H 1.08996 * 109.46976 * 60.00452 * 1 2 3 29 29 H 1.08996 * 109.46942 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00016 * 359.95465 * 4 3 2 31 31 H 1.07997 * 119.95945 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.95609 * 179.97438 * 6 5 4 33 33 H 1.09009 * 109.46885 * 209.99235 * 10 9 7 34 34 H 1.08993 * 109.47094 * 329.99260 * 10 9 7 35 35 H 0.96998 * 119.99533 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.91874 * 0.02612 * 13 12 11 37 37 H 1.07997 * 120.08767 * 180.23440 * 14 13 12 38 38 H 0.96998 * 119.99500 * 179.97438 * 19 18 16 39 39 H 1.08008 * 120.08028 * 180.02562 * 24 15 14 40 40 H 1.09004 * 109.47123 * 270.02222 * 26 25 24 41 41 H 1.08998 * 109.47328 * 30.02370 * 26 25 24 42 42 H 1.08998 * 109.47003 * 150.02074 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2910 2.3753 -0.0005 5 6 1.9191 3.6055 0.0000 6 6 3.2997 3.6787 0.0005 7 6 4.0562 2.5189 0.0000 8 9 5.4052 2.5924 0.0000 9 6 3.4307 1.2846 -0.0065 10 6 4.2533 0.0219 -0.0134 11 7 4.5202 -0.3947 1.3656 12 6 5.2651 -1.5402 1.6129 13 6 5.7530 -2.2955 0.5453 14 6 6.4891 -3.4185 0.7807 15 6 6.7478 -3.8221 2.1057 16 6 7.5049 -4.9864 2.3572 17 1 8.1046 -5.0576 3.2525 18 6 7.4783 -6.0480 1.4470 19 7 8.4203 -6.9566 1.4735 20 14 6.0987 -6.1693 0.1935 21 1 6.5383 -5.5592 -1.0871 22 1 5.7570 -7.5971 -0.0301 23 1 4.9040 -5.4480 0.7009 24 6 6.2476 -3.0578 3.1781 25 6 5.5177 -1.9336 2.9277 26 6 4.9813 -1.1150 4.0736 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2124 2.3195 -0.0017 31 1 1.3311 4.5113 0.0000 32 1 3.7887 4.6416 0.0005 33 1 3.7058 -0.7657 -0.5313 34 1 5.1972 0.2060 -0.5265 35 1 4.1766 0.1297 2.1057 36 1 5.5505 -1.9871 -0.4698 37 1 6.8693 -3.9999 -0.0462 38 1 8.4017 -7.6930 0.8425 39 1 6.4425 -3.3611 4.1963 40 1 3.9905 -1.4780 4.3469 41 1 5.6502 -1.2056 4.9293 42 1 4.9151 -0.0693 3.7733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167609464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:44 Heat of formation + Delta-G solvation = -52.446633 kcal Electronic energy + Delta-G solvation = -25598.969936 eV Core-core repulsion = 21843.627132 eV Total energy + Delta-G solvation = -3755.342803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.00298 -41.28390 -40.19858 -38.30575 -36.89186 -35.18942 -33.59524 -32.66904 -30.87054 -30.68295 -28.31479 -27.87127 -27.28121 -25.39878 -23.33034 -23.14622 -22.08822 -21.69100 -19.41491 -18.96639 -18.33037 -18.11719 -17.20995 -16.99143 -16.96146 -16.61917 -16.37592 -16.27750 -15.59734 -15.36406 -15.07331 -14.97379 -14.49286 -14.34464 -14.18835 -14.11738 -13.78594 -13.68907 -13.44510 -13.25833 -13.14032 -12.88937 -12.68479 -12.55794 -12.33760 -11.99193 -11.96704 -11.85466 -11.73670 -11.39804 -11.01055 -10.47005 -9.87740 -9.40256 -9.31911 -8.77280 -8.26572 -6.17766 0.01048 0.23433 0.85411 0.95398 1.27570 1.41654 1.51014 2.18360 2.19235 2.43458 2.68713 2.99170 3.35193 3.55910 3.57424 3.78516 3.95349 4.10487 4.20869 4.24290 4.33362 4.38986 4.41071 4.54594 4.57230 4.64160 4.69483 4.75343 4.88441 4.92163 4.96760 5.02404 5.13657 5.17784 5.19157 5.30655 5.36072 5.47662 5.66002 5.70356 5.83994 6.01031 6.24736 6.33623 6.43434 6.63466 6.88381 6.97058 7.16059 8.33392 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.003477 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.911753 B = 8051.191154 C = 8496.609881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.163 3.837 4 C -0.216 4.216 5 C -0.034 4.034 6 C -0.194 4.194 7 C 0.133 3.867 8 F -0.144 7.144 9 C -0.194 4.194 10 C 0.189 3.811 11 N -0.738 5.738 12 C 0.125 3.875 13 C -0.160 4.160 14 C -0.205 4.205 15 C 0.030 3.970 16 C -0.488 4.488 17 H 0.050 0.950 18 C 0.044 3.956 19 N -0.870 5.870 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.257 1.257 24 C -0.170 4.170 25 C -0.127 4.127 26 C -0.092 4.092 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.157 0.843 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.396 0.604 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.287 0.713 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.506 22.621 -4.651 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.116 3.884 4 C -0.235 4.235 5 C -0.052 4.052 6 C -0.213 4.213 7 C 0.113 3.887 8 F -0.123 7.123 9 C -0.196 4.196 10 C 0.064 3.936 11 N -0.374 5.374 12 C 0.025 3.975 13 C -0.182 4.182 14 C -0.225 4.225 15 C 0.027 3.973 16 C -0.520 4.520 17 H 0.069 0.931 18 C -0.167 4.167 19 N -0.499 5.499 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.181 1.181 24 C -0.190 4.190 25 C -0.131 4.131 26 C -0.149 4.149 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.183 0.817 31 H 0.193 0.807 32 H 0.174 0.826 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.232 0.768 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.240 22.186 -4.900 30.429 hybrid contribution 0.364 -0.647 -0.252 0.784 sum -19.877 21.539 -5.151 29.758 Atomic orbital electron populations 1.23414 0.75868 1.05471 1.02959 1.86166 1.23866 1.26603 1.87702 1.18690 0.90431 0.85730 0.93513 1.21658 1.01887 0.91180 1.08737 1.21259 0.92914 0.98625 0.92398 1.21360 0.95231 0.97276 1.07456 1.17562 0.76699 0.93928 1.00537 1.91501 1.30043 1.97100 1.93623 1.19139 0.92541 0.94101 1.13777 1.19574 0.96602 0.92504 0.84904 1.43976 1.60562 1.26928 1.05888 1.17301 0.97988 0.89836 0.92376 1.20138 1.03528 0.97212 0.97320 1.20650 1.06650 0.99335 0.95858 1.17715 0.93391 0.94128 0.92042 1.19245 1.25576 1.00258 1.06896 0.93139 1.26665 0.97463 0.94464 0.98099 1.69784 1.31244 1.12960 1.35888 0.85531 0.80399 0.76726 0.78609 1.19055 1.20608 1.18090 1.20696 1.02860 0.97837 0.97562 1.19207 1.02782 0.97781 0.93378 1.20545 1.00899 0.98131 0.95296 0.90844 0.90601 0.87420 0.81745 0.80702 0.82558 0.92509 0.93477 0.76839 0.87038 0.89019 0.90249 0.87834 0.91146 0.91407 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.16 9.55 -92.39 -0.88 -8.04 16 3 C 0.16 3.34 6.66 22.50 0.15 3.49 16 4 C -0.22 -2.77 9.04 22.37 0.20 -2.57 16 5 C -0.03 -0.36 10.04 22.25 0.22 -0.14 16 6 C -0.19 -2.98 10.02 22.33 0.22 -2.76 16 7 C 0.13 3.04 7.24 22.36 0.16 3.20 16 8 F -0.14 -3.96 16.48 44.97 0.74 -3.22 16 9 C -0.19 -4.81 5.27 -19.72 -0.10 -4.92 16 10 C 0.19 5.83 4.61 85.63 0.39 6.23 16 11 N -0.74 -24.98 5.60 -342.70 -1.92 -26.90 16 12 C 0.12 5.21 6.65 38.67 0.26 5.47 16 13 C -0.16 -7.28 9.23 22.15 0.20 -7.07 16 14 C -0.21 -10.61 7.11 22.48 0.16 -10.45 16 15 C 0.03 1.67 5.10 -21.27 -0.11 1.56 16 16 C -0.49 -29.53 9.55 23.38 0.22 -29.30 16 17 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 18 C 0.04 2.56 5.40 85.22 0.46 3.02 16 19 N -0.87 -51.58 13.93 21.81 0.30 -51.27 16 20 Si 0.96 46.83 24.51 68.60 1.68 48.51 16 21 H -0.26 -12.32 6.70 99.48 0.67 -11.65 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -12.79 6.87 99.48 0.68 -12.11 16 24 C -0.17 -8.30 9.37 22.47 0.21 -8.09 16 25 C -0.13 -5.35 5.86 -19.99 -0.12 -5.47 16 26 C -0.09 -2.88 9.55 71.24 0.68 -2.20 16 27 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 28 H 0.08 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.17 1.07 6.30 -2.91 -0.02 1.05 16 31 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 32 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.06 1.86 7.31 -2.38 -0.02 1.84 16 34 H 0.05 1.55 7.44 -2.39 -0.02 1.54 16 35 H 0.40 12.03 6.42 -92.71 -0.59 11.44 16 36 H 0.11 4.59 6.68 -2.91 -0.02 4.58 16 37 H 0.09 4.79 4.73 -2.91 -0.01 4.78 16 38 H 0.29 15.41 8.30 -92.71 -0.77 14.64 16 39 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 2.00 8.08 -2.39 -0.02 1.98 16 42 H 0.07 1.81 6.53 -2.39 -0.02 1.80 16 Total: -1.00 -71.96 346.87 4.66 -67.30 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.40 Total: 22.30 kcal Atomic # 6 Polarization: -53.02 SS G_CDS: 4.33 Total: -48.69 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -1.61 Total: -78.17 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.88 Total: -8.04 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.74 Total: -3.22 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.68 Total: 48.51 kcal Total: -71.96 4.66 -67.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167609464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.855 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds