Wall clock time and date at job start Tue Mar 31 2020 11:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35889 * 117.00084 * 2 1 4 4 C 1.38773 * 120.04367 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.99335 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.08203 * 0.02562 * 5 4 3 7 7 C 1.38469 * 120.08233 * 359.74435 * 6 5 4 8 8 F 1.35101 * 119.99850 * 180.25435 * 7 6 5 9 9 C 1.38386 * 120.00439 * 0.51211 * 7 6 5 10 10 C 1.50709 * 120.04005 * 179.76664 * 9 7 6 11 11 N 1.46495 * 109.46836 * 269.72488 * 10 9 7 12 12 C 1.38866 * 119.99636 * 180.02562 * 11 10 9 13 13 C 1.39585 * 119.84063 * 359.97438 * 12 11 10 14 14 C 1.36326 * 120.15918 * 180.02562 * 13 12 11 15 15 C 1.40908 * 119.83338 * 359.97438 * 14 13 12 16 16 C 1.41136 * 120.15086 * 179.72947 * 15 14 13 17 17 H 1.08003 * 119.99807 * 153.64970 * 16 15 14 18 18 C 1.39865 * 119.99954 * 333.63794 * 16 15 14 19 19 N 1.30901 * 120.00049 * 343.94599 * 18 16 15 20 20 Si 1.86801 * 119.99671 * 163.94428 * 18 16 15 21 21 H 1.48502 * 109.47500 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47171 * 120.00579 * 20 18 16 23 23 H 1.48511 * 109.46812 * 239.99995 * 20 18 16 24 24 C 1.40873 * 119.68984 * 359.97438 * 15 14 13 25 25 C 1.50706 * 120.07817 * 180.02562 * 24 15 14 26 26 C 1.36349 * 119.83576 * 0.02633 * 24 15 14 27 27 H 1.09003 * 109.47106 * 300.00049 * 1 2 3 28 28 H 1.09004 * 109.47153 * 59.99458 * 1 2 3 29 29 H 1.08999 * 109.47564 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00021 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.96089 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.95722 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47257 * 149.71883 * 10 9 7 34 34 H 1.09007 * 109.46478 * 29.72007 * 10 9 7 35 35 H 0.96996 * 120.00384 * 359.97438 * 11 10 9 36 36 H 1.07993 * 119.91953 * 0.02562 * 13 12 11 37 37 H 1.07995 * 120.08625 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99898 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.47046 * 90.00137 * 25 24 15 40 40 H 1.08996 * 109.46734 * 210.00060 * 25 24 15 41 41 H 1.09001 * 109.47091 * 329.99767 * 25 24 15 42 42 H 1.08001 * 119.91664 * 179.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2911 2.3752 -0.0005 5 6 1.9193 3.6054 -0.0011 6 6 3.2999 3.6785 -0.0016 7 6 4.0564 2.5187 0.0037 8 9 5.4054 2.5921 0.0084 9 6 3.4307 1.2844 -0.0011 10 6 4.2532 0.0216 -0.0006 11 7 4.5193 -0.3884 -1.3816 12 6 5.2639 -1.5328 -1.6349 13 6 5.7577 -2.2897 -0.5711 14 6 6.4899 -3.4141 -0.8123 15 6 6.7473 -3.8117 -2.1394 16 6 7.5094 -4.9714 -2.3968 17 1 7.3683 -5.5167 -3.3183 18 6 8.4475 -5.4143 -1.4586 19 7 8.8495 -4.6116 -0.5059 20 14 9.1266 -7.1512 -1.5653 21 1 8.5157 -7.8514 -2.7237 22 1 10.6003 -7.0966 -1.7401 23 1 8.8032 -7.8866 -0.3162 24 6 6.2448 -3.0434 -3.2079 25 6 6.5144 -3.4609 -4.6307 26 6 5.5141 -1.9212 -2.9517 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2125 2.3195 -0.0005 31 1 1.3312 4.5113 -0.0011 32 1 3.7890 4.6414 -0.0016 33 1 3.7060 -0.7683 0.5140 34 1 5.1975 0.2033 0.5128 35 1 4.1747 0.1391 -2.1191 36 1 5.5592 -1.9839 0.4454 37 1 6.8717 -3.9986 0.0116 38 1 9.4998 -4.9189 0.1450 39 1 5.7184 -4.1226 -4.9722 40 1 6.5508 -2.5774 -5.2678 41 1 7.4690 -3.9848 -4.6809 42 1 5.1285 -1.3310 -3.7699 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167612890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:38 Heat of formation + Delta-G solvation = -36.263339 kcal Electronic energy + Delta-G solvation = -25288.230931 eV Core-core repulsion = 21533.589888 eV Total energy + Delta-G solvation = -3754.641043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.95447 -40.40805 -38.04508 -37.43617 -35.33241 -33.21380 -31.78783 -30.58028 -30.06646 -28.65221 -27.56215 -26.42743 -25.16159 -23.76979 -22.44264 -21.80296 -20.79666 -19.07429 -18.50313 -17.19318 -17.01496 -16.48639 -16.12585 -16.07606 -15.48522 -15.38094 -14.90781 -14.78101 -14.61013 -13.70948 -13.50895 -13.28829 -12.98805 -12.92445 -12.57483 -12.50572 -12.44385 -12.25142 -11.88402 -11.61300 -11.51241 -11.26480 -11.04990 -11.00950 -10.91747 -10.81521 -10.64174 -10.34886 -9.47838 -9.21882 -9.11816 -8.92214 -8.49154 -8.37019 -7.23905 -6.54274 -6.26543 -3.94754 0.88238 1.05789 2.94952 2.96530 3.15259 3.20029 3.25193 3.30795 3.42893 4.11701 4.18900 4.44127 4.58275 4.64144 4.75868 4.83208 4.85607 4.91239 5.06169 5.13316 5.27924 5.64976 5.67029 5.84334 5.87726 6.04842 6.07334 6.26081 6.33545 6.37609 6.52848 6.53054 6.77900 6.81817 7.00929 7.09137 7.11279 7.31379 7.45154 7.70140 7.84110 7.91708 8.23918 8.40362 8.57706 8.79341 8.88677 9.15073 9.24959 10.46771 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.002960 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.543367 B = 9457.916621 C = 9711.013619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.299 6.299 3 C 0.173 3.827 4 C -0.226 4.226 5 C -0.050 4.050 6 C -0.198 4.198 7 C 0.155 3.845 8 F -0.125 7.125 9 C -0.167 4.167 10 C 0.189 3.811 11 N -0.753 5.753 12 C 0.103 3.897 13 C -0.169 4.169 14 C -0.118 4.118 15 C 0.076 3.924 16 C -0.463 4.463 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.810 5.810 20 Si 0.900 3.100 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.275 1.275 24 C -0.156 4.156 25 C -0.085 4.085 26 C -0.159 4.159 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.383 0.617 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.274 0.726 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 13.609 2.784 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.211 6.211 3 C 0.126 3.874 4 C -0.245 4.245 5 C -0.068 4.068 6 C -0.217 4.217 7 C 0.135 3.865 8 F -0.103 7.103 9 C -0.169 4.169 10 C 0.064 3.936 11 N -0.388 5.388 12 C 0.006 3.994 13 C -0.191 4.191 14 C -0.138 4.138 15 C 0.073 3.927 16 C -0.494 4.494 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.438 5.438 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.201 1.201 24 C -0.159 4.159 25 C -0.141 4.141 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.215 0.785 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.765 13.368 3.178 20.170 hybrid contribution 0.233 -0.264 -0.130 0.376 sum -14.532 13.104 3.049 19.804 Atomic orbital electron populations 1.23128 0.78132 1.04408 1.01210 1.86216 1.21384 1.25904 1.87586 1.18535 0.90886 0.84707 0.93278 1.21271 1.00408 0.92078 1.10751 1.20741 0.93447 0.97356 0.95294 1.21039 0.94444 0.97541 1.08666 1.17259 0.77255 0.93067 0.98907 1.91555 1.28582 1.96988 1.93215 1.19373 0.91826 0.95392 1.10324 1.19603 0.96524 0.90817 0.86629 1.43781 1.62349 1.28698 1.03984 1.17322 0.99252 0.89486 0.93336 1.20072 1.04937 0.98701 0.95340 1.20902 0.98710 0.96653 0.97575 1.17344 0.92267 0.92660 0.90419 1.19369 1.17661 1.08781 1.03600 0.90779 1.25787 0.95618 0.98153 0.94544 1.69865 1.25462 1.34933 1.13510 0.86401 0.78686 0.83298 0.79054 1.18696 1.20372 1.20087 1.19294 1.05363 0.96627 0.94568 1.20409 1.00998 0.99027 0.93707 1.19628 1.05888 0.99597 0.92980 0.92585 0.92506 0.87872 0.84835 0.84815 0.84587 0.91760 0.92465 0.78503 0.89513 0.86480 0.91517 0.94089 0.94572 0.91936 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.30 -3.77 9.54 -19.39 -0.19 -3.95 16 3 C 0.17 2.14 6.66 -39.23 -0.26 1.88 16 4 C -0.23 -2.12 9.04 -39.42 -0.36 -2.48 16 5 C -0.05 -0.43 10.04 -39.61 -0.40 -0.83 16 6 C -0.20 -2.04 10.02 -39.49 -0.40 -2.43 16 7 C 0.16 2.08 7.24 -39.44 -0.29 1.79 16 8 F -0.13 -1.91 16.47 2.25 0.04 -1.87 16 9 C -0.17 -2.38 5.27 -104.40 -0.55 -2.93 16 10 C 0.19 3.24 4.62 -5.19 -0.02 3.22 16 11 N -0.75 -14.45 5.69 -59.67 -0.34 -14.79 16 12 C 0.10 2.37 6.67 -83.68 -0.56 1.81 16 13 C -0.17 -4.14 9.23 -39.77 -0.37 -4.51 16 14 C -0.12 -3.20 8.61 -39.26 -0.34 -3.54 16 15 C 0.08 2.09 5.56 -106.79 -0.59 1.49 16 16 C -0.46 -12.64 8.09 -37.87 -0.31 -12.95 16 17 H 0.07 1.96 6.89 -52.48 -0.36 1.59 16 18 C 0.07 1.93 5.16 -17.34 -0.09 1.84 16 19 N -0.81 -21.98 10.97 55.54 0.61 -21.37 16 20 Si 0.90 19.60 29.59 -169.99 -5.03 14.57 16 21 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.16 -3.93 5.90 -104.30 -0.62 -4.54 16 25 C -0.08 -1.83 9.40 36.01 0.34 -1.50 16 26 C -0.16 -3.73 9.46 -39.77 -0.38 -4.10 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.06 1.14 7.31 -51.93 -0.38 0.76 16 34 H 0.06 1.04 7.42 -51.93 -0.39 0.66 16 35 H 0.38 6.83 8.46 -40.82 -0.35 6.49 16 36 H 0.09 1.97 6.68 -52.49 -0.35 1.62 16 37 H 0.12 3.27 6.23 -52.49 -0.33 2.95 16 38 H 0.27 6.82 8.30 -40.82 -0.34 6.48 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.69 8.08 -51.93 -0.42 0.28 16 41 H 0.06 1.39 6.77 -51.93 -0.35 1.04 16 42 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -30.57 352.58 -9.07 -39.64 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.30 Total: 9.03 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -4.18 Total: -26.58 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.27 Total: -36.15 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.19 Total: -3.95 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.57 -9.07 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167612890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.379 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds